TCONS_00073476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073476
Unique NameTCONS_00073476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073476 ID=TCONS_00073476|Name=TCONS_00073476|organism=Clytia hemisphaerica|type=transcript|length=547bp
TCAGTATGTCACCTCAATAAAACATTTGGACagactggagacttcaaaaa
tggtcagatttggcttAAATTTTGCTCACTTGTTCCTTGTGTGAATatct
gggttttttttttttaatttacaattttgtaAGCAACAACACAATGGcct
tacttttttctttctttgtttggaTATGTgacaaaattatgtaaattcgT
TCAACCTTATCTggcagatgttttttttatCGTTGTTgtagaaatctttg
aaaatcggGAACTTTTTAACTGCAATTATGTATGAGagcatttgatttga
tttgttcTGAACTAACCATAAACCTCTGTCAGTAGAGGTGCTAAAAACTT
GGAGCATGTGGCGGCAGGTCTGATagtattatcttttttctggaCCTGGT
TAGCTCGGTTGAAGTGTGCCAATGATTATAAGATGGTTATCTTTCAATTA
GCaaaatgatttgatttgataCACATGTTATGGATATACCATGTGGCTCC
CTAGATTTTGTAGAGGAGGAGATCTCCTATAAACAACTTAacttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_92:65862..66408

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073476 ID=TCONS_00073476|Name=TCONS_00073476|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_92:65862..66408 (Clytia hemisphaerica)
tttaagtTAAGTTGTTTATAGGAGATCTCCTCCTCTACAAAATCTAGGGA
GCCACATGGTATATCCATAACATGTGtatcaaatcaaatcattttGCTAA
TTGAAAGATAACCATCTTATAATCATTGGCACACTTCAACCGAGCTAACC
AGGtccagaaaaaagataatactATCAGACCTGCCGCCACATGCTCCAAG
TTTTTAGCACCTCTACTGACAGAGGTTTATGGTTAGTTCAgaacaaatca
aatcaaatgctCTCATACATAATTGCAGTTAAAAAGTTCccgattttcaa
agatttctacAACAACGataaaaaaaacatctgccAGATAAGGTTGAAcg
aatttacataattttgtcACATAtccaaacaaagaaagaaaaaagtaagg
CCATTGTGTTGTTGCTtacaaaattgtaaattaaaaaaaaaaaacccaga
tATTCACACAAGGAACAAGTGAGCAAAATTTaagccaaatctgaccattt
ttgaagtctccagtctGTCCAAATGTTTTATTGAGGTGACATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045604XLOC_045604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073476-exon-scaffold_92-1491911889:65862..66408TCONS_00073476-exon-scaffold_92-1491911889:65862..66408Clytia hemisphaericaexon
TCONS_00073476-exon-scaffold_92-1510915933:65862..66408TCONS_00073476-exon-scaffold_92-1510915933:65862..66408Clytia hemisphaericaexon
TCONS_00073476-exon-scaffold_92-1575043694:65862..66408TCONS_00073476-exon-scaffold_92-1575043694:65862..66408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:65862..66408 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54809	0.377942	1.17181	0.770637	0.290569	0.469468	0.809685	0.513179	0.0884509	0	0.584076	0.299554	0.143716	0.856805	0.555325	0.594313	1.0288	0.772096	0.809978	0.516958	0.320375	0.178935	0.453905	0	1.35234	1.59708	0.230263	0.391321	0.737618	0.491339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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