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TCONS_00073476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073476
Unique NameTCONS_00073476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073476 ID=TCONS_00073476|Name=TCONS_00073476|organism=Clytia hemisphaerica|type=transcript|length=547bp
TCAGTATGTCACCTCAATAAAACATTTGGACagactggagacttcaaaaa
tggtcagatttggcttAAATTTTGCTCACTTGTTCCTTGTGTGAATatct
gggttttttttttttaatttacaattttgtaAGCAACAACACAATGGcct
tacttttttctttctttgtttggaTATGTgacaaaattatgtaaattcgT
TCAACCTTATCTggcagatgttttttttatCGTTGTTgtagaaatctttg
aaaatcggGAACTTTTTAACTGCAATTATGTATGAGagcatttgatttga
tttgttcTGAACTAACCATAAACCTCTGTCAGTAGAGGTGCTAAAAACTT
GGAGCATGTGGCGGCAGGTCTGATagtattatcttttttctggaCCTGGT
TAGCTCGGTTGAAGTGTGCCAATGATTATAAGATGGTTATCTTTCAATTA
GCaaaatgatttgatttgataCACATGTTATGGATATACCATGTGGCTCC
CTAGATTTTGTAGAGGAGGAGATCTCCTATAAACAACTTAacttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_92:65862..66408

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073476 ID=TCONS_00073476|Name=TCONS_00073476|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_92:65862..66408 (Clytia hemisphaerica)
tttaagtTAAGTTGTTTATAGGAGATCTCCTCCTCTACAAAATCTAGGGA GCCACATGGTATATCCATAACATGTGtatcaaatcaaatcattttGCTAA TTGAAAGATAACCATCTTATAATCATTGGCACACTTCAACCGAGCTAACC AGGtccagaaaaaagataatactATCAGACCTGCCGCCACATGCTCCAAG TTTTTAGCACCTCTACTGACAGAGGTTTATGGTTAGTTCAgaacaaatca aatcaaatgctCTCATACATAATTGCAGTTAAAAAGTTCccgattttcaa agatttctacAACAACGataaaaaaaacatctgccAGATAAGGTTGAAcg aatttacataattttgtcACATAtccaaacaaagaaagaaaaaagtaagg CCATTGTGTTGTTGCTtacaaaattgtaaattaaaaaaaaaaaacccaga tATTCACACAAGGAACAAGTGAGCAAAATTTaagccaaatctgaccattt ttgaagtctccagtctGTCCAAATGTTTTATTGAGGTGACATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045604XLOC_045604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073476-exon-scaffold_92-1491911889:65862..66408TCONS_00073476-exon-scaffold_92-1491911889:65862..66408Clytia hemisphaericaexon
TCONS_00073476-exon-scaffold_92-1510915933:65862..66408TCONS_00073476-exon-scaffold_92-1510915933:65862..66408Clytia hemisphaericaexon
TCONS_00073476-exon-scaffold_92-1575043694:65862..66408TCONS_00073476-exon-scaffold_92-1575043694:65862..66408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:65862..66408 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54809 0.377942 1.17181 0.770637 0.290569 0.469468 0.809685 0.513179 0.0884509 0 0.584076 0.299554 0.143716 0.856805 0.555325 0.594313 1.0288 0.772096 0.809978 0.516958 0.320375 0.178935 0.453905 0 1.35234 1.59708 0.230263 0.391321 0.737618 0.491339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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