Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=transcript|length=2504bpRun BLAST on NCBI protein sequence of TCONS_00073470-protein >TCONS_00073470-protein ID=TCONS_00073470-protein|Name=TCONS_00073470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp LTINMRHHTISRHLRCSMLSEGGQSFYHYFAPPLPKNVIMFATNNNSIQERun BLAST on NCBI transcript from alignment at scaffold_92:259747..270415- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=transcript|length=10669bp|location=Sequence derived from alignment at scaffold_92:259747..270415- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_92:259747..270415- >TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=CDS|length=19338bp|location=Sequence derived from alignment at scaffold_92:259747..270415- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073470 vs. Swiss-Prot (Human)
Match: RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.472e-25 Identity = 91/386 (23.58%), Postives = 162/386 (41.97%), Query Frame = 1 Query: 703 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS------DDDVTKANNKSQ-------------------------VLIFGGGDNAGQFYNDVILLDV 1752 K + +P P A + G SP A+ S+ P G G K ++GG + +D + +DL +W+L + R S + + ++V+GG+ + + LN T W E P+ R +H S ++L+VFGG P D +L ++D +W P G+ P+PR GH V G+KL+I GG +DD++C+DI MK+ +L P G P+ HS + I+GG +L+ ++ + + + W+ + + +++L G H+ ++ P + D + N++++ L+FGG + G+ Y+D I+ V Sbjct: 2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371 The following BLAST results are available for this feature:
BLAST of TCONS_00073470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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