Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00073470-protein ID=TCONS_00073470-protein|Name=TCONS_00073470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR015915 Kelch-typ_b-propeller
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 Expect = 3.0E-38 / Score = 131.0 Expect = 1.3E-26 / Score = 93.0 Expect = 2.3E-7 / Score = 30.6 Expect = 2.3E-7 / Score = 30.6 Expect = 7.6E-5 / Score = 22.5 Expect = 4.7E-8 / Score = 33.0 Expect = 4.4E-5 / Score = 23.5 Score = Score = Score = Sequence G3DSA:2.120.10.80 G3DSA:2.120.10.80 PF13418 PF13415 mobidb-lite mobidb-lite SSF117281
IPR Term IPR Description Source Source Term Source Description Alignment
IPR015915 Kelch-type beta propeller GENE3D 2.120.10.80 coord: 390..585 IPR015915 Kelch-type beta propeller GENE3D 2.120.10.80 coord: 260..389 None No IPR available PFAM PF13418 Kelch_4 coord: 276..317 None No IPR available PFAM PF13415 Kelch_3 coord: 498..528 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 204..262 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 171..190 None No IPR available SUPERFAMILY 117281 Kelch motif coord: 328..584
Blast
BLAST of TCONS_00073470-protein vs. Swiss-Prot (Human)
Match:
RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)
HSP 1 Score: 109.383 bits (272), Expect = 7.397e-26
Identity = 91/386 (23.58%), Postives = 162/386 (41.97%), Query Frame = 0
Query: 235 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS------DDDVTKANNKSQ-------------------------VLIFGGGDNAGQFYNDVILLDV 584
K + +P P A + G SP A+ S+ P G G K ++GG + +D + +DL +W+L + R S + + ++V+GG+ + + LN T W E P+ R +H S ++L+VFGG P D +L ++D +W P G+ P+PR GH V G+KL+I GG +DD++C+DI MK+ +L P G P+ HS + I+GG +L+ ++ + + + W+ + + +++L G H+ ++ P + D + N++++ L+FGG + G+ Y+D I+ V
Sbjct: 2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371
The following BLAST results are available for this feature:
BLAST of TCONS_00073470-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
L T I N M R H H T I S R H L R C S M L S E G G Q S F Y H Y F A P P L P K N V I M F A T N N N S I Q E Q F E V R V S I D P S V E D K K I G E F S R D K D C F V W K V D L T E E E V D A T N K V L K M D R L L K I S V T K Q G A D E G F S S Q D K D E E D L V F D N D N D D I T E F E K S L E K F E D D F K E N Q S A I K T L H K K V A S L P T K S S T K K K V S D F F K P K Q Q K K N S D F K A K T I T S K E T V L T E T K D K V N D S D G D K E Q K G K R P H P F V D S P E S K P K K A M M Q A K P S K T P E M A K R R V I R K S G K S P A A K F S D L I S H E N P T G R W G H G C C K I C H D K A I V I G G Q T K Q Q M N T D S M W L L D L K T R K W E L Q K S D N S T I D R R V G H S V V Y D E K R N L V F V Y G G S K P K K W Y S D V Y S L N L A T F E W E K S E T I G K A P T R A Y H S C N K F H D E L F V F G G V Y P N P D P D P D G C S N E L V I Y D I A N K S W Y T P I I S G D I P N P R S G H S A V M I G S K L Y I F G G W D A P T C H D D I Y C L D I V I M K Y T R L K P I G E G P S A R T W H S T S V L S N P N Q F C I Y G G F D G N D S L N D L F V F D S V K T C W S K I H N E H N S I L R A G H T S L L M T S P Y S D D D V T K A N N K S Q V L I F G G G D N A G Q F Y N D V I L L D V K 50 100 150 200 250 300 350 400 450 500 550 Expect = 7.40e-26 / Id = 23.58 Sequence RABEK
Match Name E-value Identity Description
RABEK 7.397e-26 23.58 Rab9 effector protein with kelch motifs OS=Homo sa... [more]
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