TCONS_00073470-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073470-protein
Unique Name	TCONS_00073470-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	585

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073470-protein ID=TCONS_00073470-protein|Name=TCONS_00073470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
LTINMRHHTISRHLRCSMLSEGGQSFYHYFAPPLPKNVIMFATNNNSIQE
QFEVRVSIDPSVEDKKIGEFSRDKDCFVWKVDLTEEEVDATNKVLKMDRL
LKISVTKQGADEGFSSQDKDEEDLVFDNDNDDITEFEKSLEKFEDDFKEN
QSAIKTLHKKVASLPTKSSTKKKVSDFFKPKQQKKNSDFKAKTITSKETV
LTETKDKVNDSDGDKEQKGKRPHPFVDSPESKPKKAMMQAKPSKTPEMAK
RRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQ
MNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSK
PKKWYSDVYSLNLATFEWEKSETIGKAPTRAYHSCNKFHDELFVFGGVYP
NPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYI
FGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQF
CIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAGHTSLLMTSPYS
DDDVTKANNKSQVLIFGGGDNAGQFYNDVILLDVK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045598	XLOC_045598	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073470	TCONS_00073470	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015915	Kelch-typ_b-propeller

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 390..585 e-value: 3.0E-38 score: 131.0
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 260..389 e-value: 1.3E-26 score: 93.0
None	No IPR available	PFAM	PF13418	Kelch_4	coord: 276..317 e-value: 2.3E-7 score: 30.6 coord: 329..375 e-value: 2.3E-7 score: 30.6 coord: 380..433 e-value: 7.6E-5 score: 22.5
None	No IPR available	PFAM	PF13415	Kelch_3	coord: 498..528 e-value: 4.4E-5 score: 23.5 coord: 445..493 e-value: 4.7E-8 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..190
None	No IPR available	SUPERFAMILY	117281	Kelch motif	coord: 328..584

Blast

[Close]

BLAST of TCONS_00073470-protein vs. Swiss-Prot (Human)
Match: RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.397e-26
Identity = 91/386 (23.58%), Postives = 162/386 (41.97%), Query Frame = 0

Query:  235 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS------DDDVTKANNKSQ-------------------------VLIFGGGDNAGQFYNDVILLDV 584
            K +   +P   P  A    +   G SP A+     S+  P G    G       K  ++GG    +  +D +  +DL   +W+L       + R    S +     + ++V+GG+      + +  LN  T  W   E     P+ R +H S     ++L+VFGG      P  D    +L ++D    +W  P   G+ P+PR GH  V  G+KL+I GG      +DD++C+DI  MK+ +L P G  P+    HS   +       I+GG     +L+ ++ + + +  W+ +  + +++L  G   H+  ++  P +      D +    N++++                          L+FGG +  G+ Y+D I+  V
Sbjct:    2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371

The following BLAST results are available for this feature:

BLAST of TCONS_00073470-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073470-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RABEK	7.397e-26	23.58	Rab9 effector protein with kelch motifs OS=Homo sa...	[more]

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TCONS_00073470-protein (polypeptide) - C. hemisphaerica