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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=transcript|length=2899bp
CTCAGTAGAAAACagtagaaaaaagtcaaataaaaaaagaacacATCCAT
AACAATCAAAATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCG
GTGTTGTATCCTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATG
GCTGTTCAACCAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAG
GATAATGCGTGGTATGTTGATGAAGTCCAGCATGATGCCAATCTCTGCGC
TCCTCTCATCCTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGTGCAACT
CCTAACGAAGATCAATTCTGGTTGATGTCAGGTAGTGCAATGTTGTCTCT
TATGCCACTCACTATTTATTATATTGGTCCAATCAATGCTCAATTTCGAT
TTGCTAAAGAAGAAGACTTTGAACAAGATGAAGAGAAATGGAACGGACTT
CtctctgattggttattttATCATCGACCACGTGCTGTGTTAAGCATGGC
TTTATTCGGTGTTGCAGTTTATAAACTAGTCAAATAAAACGCCTTTGTTT
TGCAATCTTTTTATTGTCTTATACACGCTTATACACTCGCGATAAAACCA
CAGAGTTTCAAATGTTacacctattcatgatatgaacCACTGGAGAgttt
tctgagaacttttaaaattttccacccaatacgtcacttaaagaAAAGAA
GACGTATTCtattattataatattattATAGTATTATAATagtattgtat
tgtattgtattgggtggaataaaaacagaaaagttgcataatttcgtgaa
gtcattgcagtggtgcatatcatgaattgaaaagGGGATGAGGTCAGTTT
CATCTTCATTGATAAGCATATTGCTAATTAATTAGTCACTATAGCTTTCC
TGTTTTTGAACAAAGATGTGAAACCATAAACCCTGCGAATGCGAcggaaa
ttttcttttaaaaataaccTTTACAttgtttagaatttttttgtttttct
attttaaagtttttgatgtttttgcatGCTTCGTTCAATATTCTCCGTCA
AATGAGTCAATGAGTCATTAATGAGTTCCATGTTCATCAAATGAacgatt
gaaaaaaatatttcaataccGAAAAGAGCGAATCTAAGTTTTGTGTGAGG
GTGAGACCTTTCTAGGCTCTTAATTACTCAAcattataccgggtgcacca
aaaaaaagtatacaactttgtcgagatactgtgagcttcaggatttaaat
tttttttgttcattcctctttattgtatagaggatgctctaacttgaact
TTGAGCCATCGtacatacattaaatttgaaaaagtagttcgaaagttatt
tccaaaaagctgactttttttccatgtcgaaatttcaaaaaatcattaaa
aacagcgagcaaacttttctctttacACTTACCtcctttacacataaaaa
taccaaaaaatacaACTGTGCtcatcaaaactcgttacggaatttaagaa
tatggtaaaacaagctattcccactTGGGATAATACTTTTGGAaaggctg
aaaatttttttttggtaatctccaagagaggttttgatgttatgtgtgtg
ctatgtgagaaaacttttgaaaaaatagatcaccattcctcgactagttg
ctcaaagaacttgggtctgcattgagtttgctggtgttggaaatgttcat
gacaTGCAAATAAGAAGGataaactgttggcaaaatataagataagagaa
aaaggaataaaaaaaacaatgaaattgtgtttttgtcattttgtcttatt
tatagcgtgattgctacttttaatgatttttttaaatttcgacatggaaa
aaaagtcagttttttggaaataactttcgaaatactttttcaaacttaat
gtatgatagctcaaaattcaagttagagcatcctctatacaataaaaaaa
gaatgaacaaaaaatttaaatcctgaagctcacaatgtctcgacaaacct
gtctactttttttttggtgcaACCGGTATTGGACGAATTAcaccaaaata
ttttgtattGTGGTGTAATTTTATAGAGAAAATTGTAATATTATTTGATT
ATGAAATATTATCCAACTTGGACATATTTCTAGAGCACTGTAACTTTTAA
TTTCGAAATTTGTGGTCAAGTTAGAAAATAAACATGGAGAATTGTATGAA
AATATTATTCTAATGAAGttttagaaaattagaaatttagAATAAATTAA
TCAAAGAATAATTTGAAAAGATATCTTCGAAATATTAGGGGGATTGATAT
GGCTTGATTTTAGATTCAAACTTGTAATTACAAACAAATTCTTagttaag
aaaaacaaatatctcatgattaaaaagattttaacaatAAATATCGTTAA
ATTTACTTCAAAGGTATTTTCTTAAAGTTCATAAACACATTCAGGGGGTT
GTCCGTCCTTGCTCTTGTTAACTTTGAATCCGTCAAGGGAGCAATAATAA
CAGCGCTCAGTAACACAATTGCCAGTACACTTCACCAGAAACTCagaatc
ttcttcttcttctttcccCGATACAATGAATTCTCCTGCCGATTTCCCCT
CGCAATATttattcttacaaaaatcttCTCCGGCATTGAGACTAGGTGCT
TCAAAAAATGCCAAACACTTTGGAACATACCCTAATTTAGGATTCCCTTC
CATCTTGTAGTCGAAGTCGCAATAATAACATTTTTCCAGTGTGAAGCCTG
CACTACATTCAACTGCTATATAACTCATGGTGACATGTATGCCTGGTGTT
TTTCCATCACAAGTATTGACATCAGTTCCACAGAAATCAACGTTCGGGTC
TTTAATAAACGCAGGAGAACTGTCACAATTGACCATATAACACCACACT Run BLAST on NCBI protein sequence of TCONS_00073454-protein >TCONS_00073454-protein ID=TCONS_00073454-protein|Name=TCONS_00073454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSYEDVIKGLKVIGVVSLGTFAGSSLHTAMAVQPSLVEESNVPASSRIMR
GMLMKSSMMPISALLSSFSSFALYFKLRATPNEDQFWLMSGSAMLSLMPL
TIYYIGPINAQFRFAKEEDFEQDEEKWNGLLSDWLFYHRPRAVLSMALFG
VAVYKLVK Run BLAST on NCBI transcript from alignment at scaffold_92:241509..244713+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=transcript|length=3205bp|location=Sequence derived from alignment at scaffold_92:241509..244713+ (Clytia hemisphaerica)
CTCAGTAGAAAACagtagaaaaaagtcaaataaaaaaagaacacATCCAT
AACAATCAAAATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCG
GTGTTGTATCCTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATG
GCTGTTCAACCAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAG
GGTAGGATTTGTACTCATTTCCTCGTTGCTTTGAACATAATGAAAAATCG
TTCTTTTTATAGTGGTCTATGGATGTTCAcgcaatacatgttttttaata
agcaagtgTCTACCCCTATATCAGACAtaatgcttagcattctattgttc
tcaaacaataaagtcattgtttaggtaccaaaaactgagcctttAATTGC
TTTAAACGTTATGTAAAAACATGAACCGAGGTTACCTCTTATGTAAAAAC
ActattaaaattttgtttaaggGTTGTAATTAACGCTAAAGATCCCTTCT
CCTCCAGATAATGCGTGGTATGTTGATGAAGTCCAGCATGATGCCAATCT
CTGCGCTCCTCTCATCCTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGT
GCAACTCCTAACGAAGATCAATTCTGGTTGATGTCAGGTAGTGCAATGTT
GTCTCTTATGCCACTCACTATTTATTATATTGGTCCAATCAATGCTCAAT
TTCGATTTGCTAAAGAAGAAGACTTTGAACAAGATGAAGAGAAATGGAAC
GGACTTCtctctgattggttattttATCATCGACCACGTGCTGTGTTAAG
CATGGCTTTATTCGGTGTTGCAGTTTATAAACTAGTCAAATAAAACGCCT
TTGTTTTGCAATCTTTTTATTGTCTTATACACGCTTATACACTCGCGATA
AAACCACAGAGTTTCAAATGTTacacctattcatgatatgaacCACTGGA
GAgttttctgagaacttttaaaattttccacccaatacgtcacttaaaga
AAAGAAGACGTATTCtattattataatattattATAGTATTATAATagta
ttgtattgtattgtattgggtggaataaaaacagaaaagttgcataattt
cgtgaagtcattgcagtggtgcatatcatgaattgaaaagGGGATGAGGT
CAGTTTCATCTTCATTGATAAGCATATTGCTAATTAATTAGTCACTATAG
CTTTCCTGTTTTTGAACAAAGATGTGAAACCATAAACCCTGCGAATGCGA
cggaaattttcttttaaaaataaccTTTACAttgtttagaatttttttgt
ttttctattttaaagtttttgatgtttttgcatGCTTCGTTCAATATTCT
CCGTCAAATGAGTCAATGAGTCATTAATGAGTTCCATGTTCATCAAATGA
acgattgaaaaaaatatttcaataccGAAAAGAGCGAATCTAAGTTTTGT
GTGAGGGTGAGACCTTTCTAGGCTCTTAATTACTCAAcattataccgggt
gcaccaaaaaaaagtatacaactttgtcgagatactgtgagcttcaggat
ttaaattttttttgttcattcctctttattgtatagaggatgctctaact
tgaactTTGAGCCATCGtacatacattaaatttgaaaaagtagttcgaaa
gttatttccaaaaagctgactttttttccatgtcgaaatttcaaaaaatc
attaaaaacagcgagcaaacttttctctttacACTTACCtcctttacaca
taaaaataccaaaaaatacaACTGTGCtcatcaaaactcgttacggaatt
taagaatatggtaaaacaagctattcccactTGGGATAATACTTTTGGAa
aggctgaaaatttttttttggtaatctccaagagaggttttgatgttatg
tgtgtgctatgtgagaaaacttttgaaaaaatagatcaccattcctcgac
tagttgctcaaagaacttgggtctgcattgagtttgctggtgttggaaat
gttcatgacaTGCAAATAAGAAGGataaactgttggcaaaatataagata
agagaaaaaggaataaaaaaaacaatgaaattgtgtttttgtcattttgt
cttatttatagcgtgattgctacttttaatgatttttttaaatttcgaca
tggaaaaaaagtcagttttttggaaataactttcgaaatactttttcaaa
cttaatgtatgatagctcaaaattcaagttagagcatcctctatacaata
aaaaaagaatgaacaaaaaatttaaatcctgaagctcacaatgtctcgac
aaacctgtctactttttttttggtgcaACCGGTATTGGACGAATTAcacc
aaaatattttgtattGTGGTGTAATTTTATAGAGAAAATTGTAATATTAT
TTGATTATGAAATATTATCCAACTTGGACATATTTCTAGAGCACTGTAAC
TTTTAATTTCGAAATTTGTGGTCAAGTTAGAAAATAAACATGGAGAATTG
TATGAAAATATTATTCTAATGAAGttttagaaaattagaaatttagAATA
AATTAATCAAAGAATAATTTGAAAAGATATCTTCGAAATATTAGGGGGAT
TGATATGGCTTGATTTTAGATTCAAACTTGTAATTACAAACAAATTCTTa
gttaagaaaaacaaatatctcatgattaaaaagattttaacaatAAATAT
CGTTAAATTTACTTCAAAGGTATTTTCTTAAAGTTCATAAACACATTCAG
GGGGTTGTCCGTCCTTGCTCTTGTTAACTTTGAATCCGTCAAGGGAGCAA
TAATAACAGCGCTCAGTAACACAATTGCCAGTACACTTCACCAGAAACTC
agaatcttcttcttcttctttcccCGATACAATGAATTCTCCTGCCGATT
TCCCCTCGCAATATttattcttacaaaaatcttCTCCGGCATTGAGACTA
GGTGCTTCAAAAAATGCCAAACACTTTGGAACATACCCTAATTTAGGATT
CCCTTCCATCTTGTAGTCGAAGTCGCAATAATAACATTTTTCCAGTGTGA
AGCCTGCACTACATTCAACTGCTATATAACTCATGGTGACATGTATGCCT
GGTGTTTTTCCATCACAAGTATTGACATCAGTTCCACAGAAATCAACGTT
CGGGTCTTTAATAAACGCAGGAGAACTGTCACAATTGACCATATAACACC
ACACT Coding sequence (CDS) from alignment at scaffold_92:241509..244713+ >TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_92:241509..244713+ (Clytia hemisphaerica)
ATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCGGTGTTGTATC
CTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATGGCTGTTCAAC
CAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAGGATAATGCGT
GGTATGTTGATGAAGTCCAGCATGATGCCAATCTCTGCGCTCCTCTCATC
CTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGTGCAACTCCTAACGAAG
ATCAATTCTGGTTGATGTCAGGTAGTGCAATGTTGTCTCTTATGCCACTC
ACTATTTATTATATTGGTCCAATCAATGCTCAATTTCGATTTGCTAAAGA
AGAAGACTTTGAACAAGATGAAGAGAAATGGAACGGACTTCtctctgatt
ggttattttATCATCGACCACGTGCTGTGTTAAGCATGGCTTTATTCGGT
GTTGCAGTTTATAAACTAGTCAAATAAATGTCATACGAAGATGTGATTAA
AGGATTGAAAGTGATCGGTGTTGTATCCTTAGGAACGTTCGCTGGATCTT
CCCTTCACACTGCAATGGCTGTTCAACCAAGCTTGGTGGAGGAATCTAAC
GTACCTGCCTCGTCAAGGATAATGCGTGGTATGTTGATGAAGTCCAGCAT
GATGCCAATCTCTGCGCTCCTCTCATCCTTTTCCTCGTTCGCTCTTTATT
TCAAACTCCGTGCAACTCCTAACGAAGATCAATTCTGGTTGATGTCAGGT
AGTGCAATGTTGTCTCTTATGCCACTCACTATTTATTATATTGGTCCAAT
CAATGCTCAATTTCGATTTGCTAAAGAAGAAGACTTTGAACAAGATGAAG
AGAAATGGAACGGACTTCtctctgattggttattttATCATCGACCACGT
GCTGTGTTAAGCATGGCTTTATTCGGTGTTGCAGTTTATAAACTAGTCAA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073454-exon-scaffold_92-1491911889:241509..241709 | TCONS_00073454-exon-scaffold_92-1491911889:241509..241709 | Clytia hemisphaerica | exon |
| TCONS_00073454-exon-scaffold_92-1510915933:241509..241709 | TCONS_00073454-exon-scaffold_92-1510915933:241509..241709 | Clytia hemisphaerica | exon |
| TCONS_00073454-exon-scaffold_92-1575043694:241509..241709 | TCONS_00073454-exon-scaffold_92-1575043694:241509..241709 | Clytia hemisphaerica | exon |
| TCONS_00073454-exon-scaffold_92-1491911889:242016..244713 | TCONS_00073454-exon-scaffold_92-1491911889:242016..244713 | Clytia hemisphaerica | exon |
| TCONS_00073454-exon-scaffold_92-1510915933:242016..244713 | TCONS_00073454-exon-scaffold_92-1510915933:242016..244713 | Clytia hemisphaerica | exon |
| TCONS_00073454-exon-scaffold_92-1575043694:242016..244713 | TCONS_00073454-exon-scaffold_92-1575043694:242016..244713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:241509..244713 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013901 | Anthrone_oxy |
Blast
The following BLAST results are available for this feature:
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