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TCONS_00073454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073454
Unique NameTCONS_00073454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=transcript|length=2899bp
CTCAGTAGAAAACagtagaaaaaagtcaaataaaaaaagaacacATCCAT
AACAATCAAAATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCG
GTGTTGTATCCTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATG
GCTGTTCAACCAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAG
GATAATGCGTGGTATGTTGATGAAGTCCAGCATGATGCCAATCTCTGCGC
TCCTCTCATCCTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGTGCAACT
CCTAACGAAGATCAATTCTGGTTGATGTCAGGTAGTGCAATGTTGTCTCT
TATGCCACTCACTATTTATTATATTGGTCCAATCAATGCTCAATTTCGAT
TTGCTAAAGAAGAAGACTTTGAACAAGATGAAGAGAAATGGAACGGACTT
CtctctgattggttattttATCATCGACCACGTGCTGTGTTAAGCATGGC
TTTATTCGGTGTTGCAGTTTATAAACTAGTCAAATAAAACGCCTTTGTTT
TGCAATCTTTTTATTGTCTTATACACGCTTATACACTCGCGATAAAACCA
CAGAGTTTCAAATGTTacacctattcatgatatgaacCACTGGAGAgttt
tctgagaacttttaaaattttccacccaatacgtcacttaaagaAAAGAA
GACGTATTCtattattataatattattATAGTATTATAATagtattgtat
tgtattgtattgggtggaataaaaacagaaaagttgcataatttcgtgaa
gtcattgcagtggtgcatatcatgaattgaaaagGGGATGAGGTCAGTTT
CATCTTCATTGATAAGCATATTGCTAATTAATTAGTCACTATAGCTTTCC
TGTTTTTGAACAAAGATGTGAAACCATAAACCCTGCGAATGCGAcggaaa
ttttcttttaaaaataaccTTTACAttgtttagaatttttttgtttttct
attttaaagtttttgatgtttttgcatGCTTCGTTCAATATTCTCCGTCA
AATGAGTCAATGAGTCATTAATGAGTTCCATGTTCATCAAATGAacgatt
gaaaaaaatatttcaataccGAAAAGAGCGAATCTAAGTTTTGTGTGAGG
GTGAGACCTTTCTAGGCTCTTAATTACTCAAcattataccgggtgcacca
aaaaaaagtatacaactttgtcgagatactgtgagcttcaggatttaaat
tttttttgttcattcctctttattgtatagaggatgctctaacttgaact
TTGAGCCATCGtacatacattaaatttgaaaaagtagttcgaaagttatt
tccaaaaagctgactttttttccatgtcgaaatttcaaaaaatcattaaa
aacagcgagcaaacttttctctttacACTTACCtcctttacacataaaaa
taccaaaaaatacaACTGTGCtcatcaaaactcgttacggaatttaagaa
tatggtaaaacaagctattcccactTGGGATAATACTTTTGGAaaggctg
aaaatttttttttggtaatctccaagagaggttttgatgttatgtgtgtg
ctatgtgagaaaacttttgaaaaaatagatcaccattcctcgactagttg
ctcaaagaacttgggtctgcattgagtttgctggtgttggaaatgttcat
gacaTGCAAATAAGAAGGataaactgttggcaaaatataagataagagaa
aaaggaataaaaaaaacaatgaaattgtgtttttgtcattttgtcttatt
tatagcgtgattgctacttttaatgatttttttaaatttcgacatggaaa
aaaagtcagttttttggaaataactttcgaaatactttttcaaacttaat
gtatgatagctcaaaattcaagttagagcatcctctatacaataaaaaaa
gaatgaacaaaaaatttaaatcctgaagctcacaatgtctcgacaaacct
gtctactttttttttggtgcaACCGGTATTGGACGAATTAcaccaaaata
ttttgtattGTGGTGTAATTTTATAGAGAAAATTGTAATATTATTTGATT
ATGAAATATTATCCAACTTGGACATATTTCTAGAGCACTGTAACTTTTAA
TTTCGAAATTTGTGGTCAAGTTAGAAAATAAACATGGAGAATTGTATGAA
AATATTATTCTAATGAAGttttagaaaattagaaatttagAATAAATTAA
TCAAAGAATAATTTGAAAAGATATCTTCGAAATATTAGGGGGATTGATAT
GGCTTGATTTTAGATTCAAACTTGTAATTACAAACAAATTCTTagttaag
aaaaacaaatatctcatgattaaaaagattttaacaatAAATATCGTTAA
ATTTACTTCAAAGGTATTTTCTTAAAGTTCATAAACACATTCAGGGGGTT
GTCCGTCCTTGCTCTTGTTAACTTTGAATCCGTCAAGGGAGCAATAATAA
CAGCGCTCAGTAACACAATTGCCAGTACACTTCACCAGAAACTCagaatc
ttcttcttcttctttcccCGATACAATGAATTCTCCTGCCGATTTCCCCT
CGCAATATttattcttacaaaaatcttCTCCGGCATTGAGACTAGGTGCT
TCAAAAAATGCCAAACACTTTGGAACATACCCTAATTTAGGATTCCCTTC
CATCTTGTAGTCGAAGTCGCAATAATAACATTTTTCCAGTGTGAAGCCTG
CACTACATTCAACTGCTATATAACTCATGGTGACATGTATGCCTGGTGTT
TTTCCATCACAAGTATTGACATCAGTTCCACAGAAATCAACGTTCGGGTC
TTTAATAAACGCAGGAGAACTGTCACAATTGACCATATAACACCACACT
Run BLAST on NCBI

protein sequence of TCONS_00073454-protein

>TCONS_00073454-protein ID=TCONS_00073454-protein|Name=TCONS_00073454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSYEDVIKGLKVIGVVSLGTFAGSSLHTAMAVQPSLVEESNVPASSRIMR
GMLMKSSMMPISALLSSFSSFALYFKLRATPNEDQFWLMSGSAMLSLMPL
TIYYIGPINAQFRFAKEEDFEQDEEKWNGLLSDWLFYHRPRAVLSMALFG
VAVYKLVK
Run BLAST on NCBI

transcript from alignment at scaffold_92:241509..244713+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=transcript|length=3205bp|location=Sequence derived from alignment at scaffold_92:241509..244713+ (Clytia hemisphaerica)
CTCAGTAGAAAACagtagaaaaaagtcaaataaaaaaagaacacATCCAT AACAATCAAAATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCG GTGTTGTATCCTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATG GCTGTTCAACCAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAG GGTAGGATTTGTACTCATTTCCTCGTTGCTTTGAACATAATGAAAAATCG TTCTTTTTATAGTGGTCTATGGATGTTCAcgcaatacatgttttttaata agcaagtgTCTACCCCTATATCAGACAtaatgcttagcattctattgttc tcaaacaataaagtcattgtttaggtaccaaaaactgagcctttAATTGC TTTAAACGTTATGTAAAAACATGAACCGAGGTTACCTCTTATGTAAAAAC ActattaaaattttgtttaaggGTTGTAATTAACGCTAAAGATCCCTTCT CCTCCAGATAATGCGTGGTATGTTGATGAAGTCCAGCATGATGCCAATCT CTGCGCTCCTCTCATCCTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGT GCAACTCCTAACGAAGATCAATTCTGGTTGATGTCAGGTAGTGCAATGTT GTCTCTTATGCCACTCACTATTTATTATATTGGTCCAATCAATGCTCAAT TTCGATTTGCTAAAGAAGAAGACTTTGAACAAGATGAAGAGAAATGGAAC GGACTTCtctctgattggttattttATCATCGACCACGTGCTGTGTTAAG CATGGCTTTATTCGGTGTTGCAGTTTATAAACTAGTCAAATAAAACGCCT TTGTTTTGCAATCTTTTTATTGTCTTATACACGCTTATACACTCGCGATA AAACCACAGAGTTTCAAATGTTacacctattcatgatatgaacCACTGGA GAgttttctgagaacttttaaaattttccacccaatacgtcacttaaaga AAAGAAGACGTATTCtattattataatattattATAGTATTATAATagta ttgtattgtattgtattgggtggaataaaaacagaaaagttgcataattt cgtgaagtcattgcagtggtgcatatcatgaattgaaaagGGGATGAGGT CAGTTTCATCTTCATTGATAAGCATATTGCTAATTAATTAGTCACTATAG CTTTCCTGTTTTTGAACAAAGATGTGAAACCATAAACCCTGCGAATGCGA cggaaattttcttttaaaaataaccTTTACAttgtttagaatttttttgt ttttctattttaaagtttttgatgtttttgcatGCTTCGTTCAATATTCT CCGTCAAATGAGTCAATGAGTCATTAATGAGTTCCATGTTCATCAAATGA acgattgaaaaaaatatttcaataccGAAAAGAGCGAATCTAAGTTTTGT GTGAGGGTGAGACCTTTCTAGGCTCTTAATTACTCAAcattataccgggt gcaccaaaaaaaagtatacaactttgtcgagatactgtgagcttcaggat ttaaattttttttgttcattcctctttattgtatagaggatgctctaact tgaactTTGAGCCATCGtacatacattaaatttgaaaaagtagttcgaaa gttatttccaaaaagctgactttttttccatgtcgaaatttcaaaaaatc attaaaaacagcgagcaaacttttctctttacACTTACCtcctttacaca taaaaataccaaaaaatacaACTGTGCtcatcaaaactcgttacggaatt taagaatatggtaaaacaagctattcccactTGGGATAATACTTTTGGAa aggctgaaaatttttttttggtaatctccaagagaggttttgatgttatg tgtgtgctatgtgagaaaacttttgaaaaaatagatcaccattcctcgac tagttgctcaaagaacttgggtctgcattgagtttgctggtgttggaaat gttcatgacaTGCAAATAAGAAGGataaactgttggcaaaatataagata agagaaaaaggaataaaaaaaacaatgaaattgtgtttttgtcattttgt cttatttatagcgtgattgctacttttaatgatttttttaaatttcgaca tggaaaaaaagtcagttttttggaaataactttcgaaatactttttcaaa cttaatgtatgatagctcaaaattcaagttagagcatcctctatacaata aaaaaagaatgaacaaaaaatttaaatcctgaagctcacaatgtctcgac aaacctgtctactttttttttggtgcaACCGGTATTGGACGAATTAcacc aaaatattttgtattGTGGTGTAATTTTATAGAGAAAATTGTAATATTAT TTGATTATGAAATATTATCCAACTTGGACATATTTCTAGAGCACTGTAAC TTTTAATTTCGAAATTTGTGGTCAAGTTAGAAAATAAACATGGAGAATTG TATGAAAATATTATTCTAATGAAGttttagaaaattagaaatttagAATA AATTAATCAAAGAATAATTTGAAAAGATATCTTCGAAATATTAGGGGGAT TGATATGGCTTGATTTTAGATTCAAACTTGTAATTACAAACAAATTCTTa gttaagaaaaacaaatatctcatgattaaaaagattttaacaatAAATAT CGTTAAATTTACTTCAAAGGTATTTTCTTAAAGTTCATAAACACATTCAG GGGGTTGTCCGTCCTTGCTCTTGTTAACTTTGAATCCGTCAAGGGAGCAA TAATAACAGCGCTCAGTAACACAATTGCCAGTACACTTCACCAGAAACTC agaatcttcttcttcttctttcccCGATACAATGAATTCTCCTGCCGATT TCCCCTCGCAATATttattcttacaaaaatcttCTCCGGCATTGAGACTA GGTGCTTCAAAAAATGCCAAACACTTTGGAACATACCCTAATTTAGGATT CCCTTCCATCTTGTAGTCGAAGTCGCAATAATAACATTTTTCCAGTGTGA AGCCTGCACTACATTCAACTGCTATATAACTCATGGTGACATGTATGCCT GGTGTTTTTCCATCACAAGTATTGACATCAGTTCCACAGAAATCAACGTT CGGGTCTTTAATAAACGCAGGAGAACTGTCACAATTGACCATATAACACC ACACT

Coding sequence (CDS) from alignment at scaffold_92:241509..244713+

>TCONS_00073454 ID=TCONS_00073454|Name=TCONS_00073454|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_92:241509..244713+ (Clytia hemisphaerica)
ATGTCATACGAAGATGTGATTAAAGGATTGAAAGTGATCGGTGTTGTATC
CTTAGGAACGTTCGCTGGATCTTCCCTTCACACTGCAATGGCTGTTCAAC
CAAGCTTGGTGGAGGAATCTAACGTACCTGCCTCGTCAAGGATAATGCGT
GGTATGTTGATGAAGTCCAGCATGATGCCAATCTCTGCGCTCCTCTCATC
CTTTTCCTCGTTCGCTCTTTATTTCAAACTCCGTGCAACTCCTAACGAAG
ATCAATTCTGGTTGATGTCAGGTAGTGCAATGTTGTCTCTTATGCCACTC
ACTATTTATTATATTGGTCCAATCAATGCTCAATTTCGATTTGCTAAAGA
AGAAGACTTTGAACAAGATGAAGAGAAATGGAACGGACTTCtctctgatt
ggttattttATCATCGACCACGTGCTGTGTTAAGCATGGCTTTATTCGGT
GTTGCAGTTTATAAACTAGTCAAATAAATGTCATACGAAGATGTGATTAA
AGGATTGAAAGTGATCGGTGTTGTATCCTTAGGAACGTTCGCTGGATCTT
CCCTTCACACTGCAATGGCTGTTCAACCAAGCTTGGTGGAGGAATCTAAC
GTACCTGCCTCGTCAAGGATAATGCGTGGTATGTTGATGAAGTCCAGCAT
GATGCCAATCTCTGCGCTCCTCTCATCCTTTTCCTCGTTCGCTCTTTATT
TCAAACTCCGTGCAACTCCTAACGAAGATCAATTCTGGTTGATGTCAGGT
AGTGCAATGTTGTCTCTTATGCCACTCACTATTTATTATATTGGTCCAAT
CAATGCTCAATTTCGATTTGCTAAAGAAGAAGACTTTGAACAAGATGAAG
AGAAATGGAACGGACTTCtctctgattggttattttATCATCGACCACGT
GCTGTGTTAAGCATGGCTTTATTCGGTGTTGCAGTTTATAAACTAGTCAA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045589XLOC_045589Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073454-proteinTCONS_00073454-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073454-exon-scaffold_92-1491911889:241509..241709TCONS_00073454-exon-scaffold_92-1491911889:241509..241709Clytia hemisphaericaexon
TCONS_00073454-exon-scaffold_92-1510915933:241509..241709TCONS_00073454-exon-scaffold_92-1510915933:241509..241709Clytia hemisphaericaexon
TCONS_00073454-exon-scaffold_92-1575043694:241509..241709TCONS_00073454-exon-scaffold_92-1575043694:241509..241709Clytia hemisphaericaexon
TCONS_00073454-exon-scaffold_92-1491911889:242016..244713TCONS_00073454-exon-scaffold_92-1491911889:242016..244713Clytia hemisphaericaexon
TCONS_00073454-exon-scaffold_92-1510915933:242016..244713TCONS_00073454-exon-scaffold_92-1510915933:242016..244713Clytia hemisphaericaexon
TCONS_00073454-exon-scaffold_92-1575043694:242016..244713TCONS_00073454-exon-scaffold_92-1575043694:242016..244713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:241509..244713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.78357 3.6231 4.99161 5.16798 2.13201 1.69073 3.71656 3.91684 3.95393 3.56075 3.43524 3.84485 4.2902 3.96462 7.07486 6.69421 3.91772 3.99025 2.64515 3.19928 3.81067 4.15597 3.55131 2.99866 3.27457 4.33409 3.1257 2.90184 2.82146 2.47678
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013901Anthrone_oxy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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