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TCONS_00073418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073418
Unique NameTCONS_00073418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073418 ID=TCONS_00073418|Name=TCONS_00073418|organism=Clytia hemisphaerica|type=transcript|length=850bp
ACCAAGAAGACACTGTTGAAGAGGTTGAACATCCACATATTGAAGGAAAC
CGAGAAATTACTGTTGATCAAATTGAACATTCACATATTGAAAGAGAGGT
TCCGCTTCACTCAAATCCTGCTGTTGAAAGAGCAATTCAAGAATTATAAT
TATAATCAATGATGCTGAGAGGCTGCACTCGGTGGAACATTGTATGAGTT
GTTATGAGACTAGGCCTATTTATCATGTATTATCCGAGAAAGAAAAAAGG
TTTCTCAATGGTAGATGTAAAAGATGCAcagatgaaataaaaaagaacaa
atacaAGAAACACATCAATAGGTCGTTGATGTTCTCAGGATTGTATTCCC
CAGTTGAAGATTGTTTCTTGGAAAATGGGATGCATTATCACAATAACCAA
CACTTCAAGGAAATTCCCCCTTTTCTTCAAAACCTGACATTTGTCGAAAG
TCTTTTGATAAGAAAAATATCCATTGCCATTTATGTGCATTGTCTGAAGT
ATGGGATGTTAGCCTCTAAAGGTCATACAGTAGCTATACCACATGACCTA
AGAAAATTTACCAAACTACCACAACTGCCATCTGAAGTTGGTATTCTTCT
TATAAGAGGTGGTAAAAACAGCTCAAAAGCATACATGGCTTGTAGGCAAA
GAATTGAGCAGGCTTTGGTTGGTCTAATATTTGGTGTTCCAAAGTATGGT
GAAAGTGCACCAAGACCAGGATTTACCCGTTATACAGGTAAAGACCATGT
GTCTGGTATTGGGCTAAATGGGAGATTCTTTTTGTACCAGCCAAATCCAT
ATTATTGGGATGTGGTAATTGATGTTGATCGTTTGATGCatattccagaa
Run BLAST on NCBI

protein sequence of TCONS_00073418-protein

>TCONS_00073418-protein ID=TCONS_00073418-protein|Name=TCONS_00073418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MSCYETRPIYHVLSEKEKRFLNGRCKRCTDEIKKNKYKKHINRSLMFSGL
YSPVEDCFLENGMHYHNNQHFKEIPPFLQNLTFVESLLIRKISIAIYVHC
LKYGMLASKGHTVAIPHDLRKFTKLPQLPSEVGILLIRGGKNSSKAYMAC
RQRIEQALVGLIFGVPKYGESAPRPGFTRYTGKDHVSGIGLNGRFFLYQP
NPYYWDVVIDVDRLMHIPE
Run BLAST on NCBI

transcript from alignment at scaffold_91:50226..51075

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073418 ID=TCONS_00073418|Name=TCONS_00073418|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_91:50226..51075 (Clytia hemisphaerica)
ttctggaatatGCATCAAACGATCAACATCAATTACCACATCCCAATAAT ATGGATTTGGCTGGTACAAAAAGAATCTCCCATTTAGCCCAATACCAGAC ACATGGTCTTTACCTGTATAACGGGTAAATCCTGGTCTTGGTGCACTTTC ACCATACTTTGGAACACCAAATATTAGACCAACCAAAGCCTGCTCAATTC TTTGCCTACAAGCCATGTATGCTTTTGAGCTGTTTTTACCACCTCTTATA AGAAGAATACCAACTTCAGATGGCAGTTGTGGTAGTTTGGTAAATTTTCT TAGGTCATGTGGTATAGCTACTGTATGACCTTTAGAGGCTAACATCCCAT ACTTCAGACAATGCACATAAATGGCAATGGATATTTTTCTTATCAAAAGA CTTTCGACAAATGTCAGGTTTTGAAGAAAAGGGGGAATTTCCTTGAAGTG TTGGTTATTGTGATAATGCATCCCATTTTCCAAGAAACAATCTTCAACTG GGGAATACAATCCTGAGAACATCAACGACCTATTGATGTGTTTCTtgtat ttgttcttttttatttcatctgTGCATCTTTTACATCTACCATTGAGAAA CCTTTTTTCTTTCTCGGATAATACATGATAAATAGGCCTAGTCTCATAAC AACTCATACAATGTTCCACCGAGTGCAGCCTCTCAGCATCATTGATTATA ATTATAATTCTTGAATTGCTCTTTCAACAGCAGGATTTGAGTGAAGCGGA ACCTCTCTTTCAATATGTGAATGTTCAATTTGATCAACAGTAATTTCTCG GTTTCCTTCAATATGTGGATGTTCAACCTCTTCAACAGTGTCTTCTTGGT

Coding sequence (CDS) from alignment at scaffold_91:50226..51075

>TCONS_00073418 ID=TCONS_00073418|Name=TCONS_00073418|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_91:50226..51075 (Clytia hemisphaerica)
ttctggaatatGCATCAAACGATCAACATCAATTACCACATCCCAATAAT
ATGGATTTGGCTGGTACAAAAAGAATCTCCCATTTAGCCCAATACCAGAC
ACATGGTCTTTACCTGTATAACGGGTAAATCCTGGTCTTGGTGCACTTTC
ACCATACTTTGGAACACCAAATATTAGACCAACCAAAGCCTGCTCAATTC
TTTGCCTACAAGCCATGTATGCTTTTGAGCTGTTTTTACCACCTCTTATA
AGAAGAATACCAACTTCAGATGGCAGTTGTGGTAGTTTGGTAAATTTTCT
TAGGTCATGTGGTATAGCTACTGTATGACCTTTAGAGGCTAACATCCCAT
ACTTCAGACAATGCACATAAATGGCAATGGATATTTTTCTTATCAAAAGA
CTTTCGACAAATGTCAGGTTTTGAAGAAAAGGGGGAATTTCCTTGAAGTG
TTGGTTATTGTGATAATGCATCCCATTTTCCAAGAAACAATCTTCAACTG
GGGAATACAATCCTGAGAACATCAACGACCTATTGATGTGTTTCTtgtat
ttgttcttttttatttcatctgTGCATCTTTTACATCTACCATTGAGAAA
CCTTTTTTCTTTCTCGGATAATACATGATAAATAGGCCTAGTCTCATAAC
AACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045562XLOC_045562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073418-exon-scaffold_91-1491911889:50226..51075TCONS_00073418-exon-scaffold_91-1491911889:50226..51075Clytia hemisphaericaexon
TCONS_00073418-exon-scaffold_91-1510915933:50226..51075TCONS_00073418-exon-scaffold_91-1510915933:50226..51075Clytia hemisphaericaexon
TCONS_00073418-exon-scaffold_91-1575043694:50226..51075TCONS_00073418-exon-scaffold_91-1575043694:50226..51075Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073418-proteinTCONS_00073418-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:50226..51075 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0553475 0.0539725 0 0 0 0.353885 0.0711579 0 0.0466403 0 0 0 0 0 0 0 0 0.0425865 0 0 0.0535131 0.0783054 0 0 0.118848 0.477312 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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