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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073412 ID=TCONS_00073412|Name=TCONS_00073412|organism=Clytia hemisphaerica|type=transcript|length=2399bpRun BLAST on NCBI protein sequence of TCONS_00073412-protein >TCONS_00073412-protein ID=TCONS_00073412-protein|Name=TCONS_00073412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp MGCEISTHNRVDDVSSTTTESEVEKGGVKQRLFLIPRDPIQYSNQPPSVQRun BLAST on NCBI transcript from alignment at scaffold_91:370444..386796- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073412 ID=TCONS_00073412|Name=TCONS_00073412|organism=Clytia hemisphaerica|type=transcript|length=16353bp|location=Sequence derived from alignment at scaffold_91:370444..386796- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_91:370444..386796- >TCONS_00073412 ID=TCONS_00073412|Name=TCONS_00073412|organism=Clytia hemisphaerica|type=CDS|length=18360bp|location=Sequence derived from alignment at scaffold_91:370444..386796- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073412 vs. Swiss-Prot (Human)
Match: PHF24 (PHD finger protein 24 OS=Homo sapiens GN=PHF24 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 6.254e-28 Identity = 82/295 (27.80%), Postives = 132/295 (44.75%), Query Frame = 1
Query: 1195 DMNCFLCGVYTNTKTYPCRVCLRSFHDACLQKFGKLDPVSRALMVNQAETEEGWSCFNCDNLVLELFEDEVAELQQLAHKCNLNPETDTDITKEEYIEFRSKQFXXXXXXXXXXXXXXIRAKQEINDCLWSRNFVKITEEEMIRAKQEFWILDSKKTGSLGMRDFLNHEA-IKKLAKRPQKDLVNLLSEKEIYDLEMTFRELDKDGDGMITAEEAQLVYTRWL-KNLLVVSEGILPRTINAPIFVDDERKIGDATQAPVVQGADRGSGYVTWQEYLLDQAIYALASRLNKPAVHV 2073
D C +C V+T +PCRVC R FHD CL++ G + S A + A TE GWSC CDN+ L L E+E+ L + +C + P D +T E+++ +R + AK+ D ++EE+ +A ++F LD + G + DFL+HE+ + RPQ L+ LL+ KE F L + ++ E + W K + + PI +Q + ++ S +V W +L + +Y LA+R N A+H+
Sbjct: 130 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIP--DCSLTLEDFLRYRHQA-----------------AKRGDRD-------RALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARAAF--LARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHL 396 The following BLAST results are available for this feature:
BLAST of TCONS_00073412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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