TCONS_00073412-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073412-protein
Unique NameTCONS_00073412-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073412-protein ID=TCONS_00073412-protein|Name=TCONS_00073412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MGCEISTHNRVDDVSSTTTESEVEKGGVKQRLFLIPRDPIQYSNQPPSVQ
KFLNPTRYKRDEEVYINRTIEPDVVGERIAITDEEKPVLYQLEKERRQKV
WEYRPGVEIPKYRKNEEDRWNHNTRKHKMKAQYTHLKPDMNCFLCGVYTN
TKTYPCRVCLRSFHDACLQKFGKLDPVSRALMVNQAETEEGWSCFNCDNL
VLELFEDEVAELQQLAHKCNLNPETDTDITKEEYIEFRSKQFESEKVVDK
VTEEEEIRAKQEINDCLWSRNFVKITEEEMIRAKQEFWILDSKKTGSLGM
RDFLNHEAIKKLAKRPQKDLVNLLSEKEIYDLEMTFRELDKDGDGMITAE
EAQLVYTRWLKNLLVVSEGILPRTINAPIFVDDERKIGDATQAPVVQGAD
RGSGYVTWQEYLLDQAIYALASRLNKPAVHVVVNELEMKKPVGERKVVFA
ADNENIRIMHARIQAQQVADVGLTLDPVVTGPFRAAGLPEVTDERDIGQV
ATEQVLVHR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045557XLOC_045557Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073412TCONS_00073412Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR031946KIAA1045_Zf_RING
IPR002048EF_hand_dom
IPR011011Znf_FYVE_PHD
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 202..222
NoneNo IPR availableGENE3D1.10.238.10coord: 281..343
e-value: 1.2E-5
score: 24.7
NoneNo IPR availableGENE3D1.10.238.10coord: 344..413
e-value: 1.4E-5
score: 24.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 102..202
e-value: 1.3E-4
score: 21.5
IPR031946KIAA1045, RING fingerPFAMPF16744Zf_RINGcoord: 137..204
e-value: 4.3E-21
score: 74.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 327..362
score: 10.05
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 133..210
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 275..363

Blast
[Close]
BLAST of TCONS_00073412-protein vs. Swiss-Prot (Human)
Match: PHF24 (PHD finger protein 24 OS=Homo sapiens GN=PHF24 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.383e-29
Identity = 82/295 (27.80%), Postives = 132/295 (44.75%), Query Frame = 0 
Query:  139 DMNCFLCGVYTNTKTYPCRVCLRSFHDACLQKFGKLDPVSRALMVNQAETEEGWSCFNCDNLVLELFEDEVAELQQLAHKCNLNPETDTDITKEEYIEFRSKQFESEKVVDKVTEEEEIRAKQEINDCLWSRNFVKITEEEMIRAKQEFWILDSKKTGSLGMRDFLNHEA-IKKLAKRPQKDLVNLLSEKEIYDLEMTFRELDKDGDGMITAEEAQLVYTRWL-KNLLVVSEGILPRTINAPIFVDDERKIGDATQAPVVQGADRGSGYVTWQEYLLDQAIYALASRLNKPAVHV 431
            D  C +C V+T    +PCRVC R FHD CL++ G +   S A +   A TE GWSC  CDN+ L L E+E+  L +   +C + P  D  +T E+++ +R +                  AK+   D         ++EE+  +A ++F  LD +  G +   DFL+HE+ +     RPQ  L+ LL+ KE       F  L +     ++  E +     W  K         +  +   PI           +Q   +   ++ S +V W  +L +  +Y LA+R N  A+H+
Sbjct:  130 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIP--DCSLTLEDFLRYRHQA-----------------AKRGDRD-------RALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARAAF--LARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHL 396
The following BLAST results are available for this feature:
BLAST of TCONS_00073412-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHF247.383e-2927.80PHD finger protein 24 OS=Homo sapiens GN=PHF24 PE=... [more]
back to top