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TCONS_00073411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073411
Unique NameTCONS_00073411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073411 ID=TCONS_00073411|Name=TCONS_00073411|organism=Clytia hemisphaerica|type=transcript|length=902bp
CGGCAAAGTTGAGTAGAGGATAATTTTTATCAATCAGTTTTGGCAACATT
GATTGTGAATCAAAATGCAGGAAAATGATTTGGTCAGATACTTCCTTTAT
ATATTGTTACTGGCTCTCATCACCATAAAAGGTTGCAACGGaaagaatgt
ttacatttcATATATCAACGGGCAAGATCTTCCAGGTTGTGGTACTCAGG
AATCGACCCCTTGTTCGTCATACCAATATGCAGATCTGAATAACATCGTC
ACaaataatgacgtaatcttgttCTTAAACATGGAATCAAAATTACCGGC
TTTTCAAAAATCCTTGGAAATAAAACATTTGAACCTGACATTCATTACCT
TAGAACCGAAGAGAGTTAAATCAGGGGCAGATTCAAATGGACACAAATCT
CCAGATCATACTTCAAGTCAAAAAGGTCCAACATCCCGGATCGAGTCTCC
TCGATTTCCAAACTTACCGCCGTCAAGAAAAGTTAGATCATCTTTGGATT
CGAAAGATGATCAATATTCAAGAAATATGGAAATCGTCGTCGATGGAGAA
ATAGAAGGAAACCATGCTCAACCAGATTCCCAAAGCACCACATTTCATAC
CAACCAACCAAATTCTAATTCCGAAAACAGATCTATAAATTTGTCTGAAA
ATTCCTTATTCCGATTATCCAAGAACATCTCTAACACACCATTACCAGAA
CTCCAAAATAAAACACCAGAACCTACATCACAATTAATCAACCTAACTCT
AATTGGATTCAAGTTCACCAATATCATTCTGTTAGATGCTACCAGAGCTG
TTGGAGCTCACCTGGAGATCTCTTTGCATTTGATTGATTGTTGGATTGGA
AACAATGTCATTTTCACCAAGGACGATAGAATCCAAAATGAACAACATAA
CA
Run BLAST on NCBI

protein sequence of TCONS_00073411-protein

>TCONS_00073411-protein ID=TCONS_00073411-protein|Name=TCONS_00073411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MQENDLVRYFLYILLLALITIKGCNGKNVYISYINGQDLPGCGTQESTPC
SSYQYADLNNIVTNNDVILFLNMESKLPAFQKSLEIKHLNLTFITLEPKR
VKSGADSNGHKSPDHTSSQKGPTSRIESPRFPNLPPSRKVRSSLDSKDDQ
YSRNMEIVVDGEIEGNHAQPDSQSTTFHTNQPNSNSENRSINLSENSLFR
LSKNISNTPLPELQNKTPEPTSQLINLTLIGFKFTNIILLDATRAVGAHL
EISLHLIDCWIGNNVIFTKDDRIQNEQHN
Run BLAST on NCBI

transcript from alignment at scaffold_91:364186..365918-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073411 ID=TCONS_00073411|Name=TCONS_00073411|organism=Clytia hemisphaerica|type=transcript|length=1733bp|location=Sequence derived from alignment at scaffold_91:364186..365918- (Clytia hemisphaerica)
CGGCAAAGTTGAGTAGAGGATAATTTTTATCAATCAGTTTTGGCAACATT GATTGTGAATCAAAATGCAGGAAAATGATTTGGTCAGATACTTCCTTTAT ATATTGTTACTGGCTCTCATCACCATAAAAGGTGAGTACGCCAGTATGTG TTTTAACTAATCATAAAGTCAATACTTTACGTGGTAGAGTCGATATTTAA CGTTGATAGCCCAGTAATCTAAGACTTTTAGGCAGTCTTTCGATGTTTTC ACGGAGTGTACGGCCAGCCGGCTCGGCTTTCTATGAATTGAACGGAACAT TGGAAGGAGCGGGAATTCGGACCGCGAATCCCTGGTTTGAAACGCTGACG CCTTTGACCACTTGACCATCGCTCCTTATTACTCTGGTTACTCTAGTATT TTTGGACTGTTAGACTTGATAGACTTTGTTTTTACAGGGTCCTATTAGTC CACAGAGGGTCCGCATATTATGGGGCATGGAGTACCACCTTGGTGGTAAC AAGGTTTGAGACTGTTTTTAATTTTGAACATACTTTTTATATTTTTATTG GAATCATGGTGGTTTTTAGGCTAGTTAGGGGGCAAAATGCTACTAGGGAG GTCTTTAAAGGCTACCTAGCAATCATTGTTGGACACATTTGCCTGGGGTA GGGCCACTTCATTTTTAAAAATACGGAACTACTGAAACCACTTGGCTACA GTATTTTAGCGGCCTTTTGGCAGTGTGTGTGTTCATTATAAAATTCTCTT CACTTTAAAAGTGTGTAAAATTCTTGCTCTTATTTAGTCAGAATAGCAGA CCTCTATAGATATACTTCTTATAAGAAACTCTTTTCGCTAGAAGATGAGC AGAAGCCTAGCTCTTATTATAATATTTTAAGTATTGTTATTCTAAGTCTT TTCAATAATAAATCTATACCTCCTACCGACTGTTATGTTAATTTGCCATT TTCCTTAACCAGGTTGCAACGGAAAGAATGTTTACATTTCATATATCAAC GGGCAAGATCTTCCAGGTTGTGGTACTCAGGAATCGACCCCTTGTTCGTC ATACCAATATGCAGATCTGAATAACATCGTCACAAATAATGACGTAATCT TGTTCTTAAACATGGAATCAAAATTACCGGCTTTTCAAAAATCCTTGGAA ATAAAACATTTGAACCTGACATTCATTACCTTAGAACCGAAGAGAGTTAA ATCAGGGGCAGATTCAAATGGACACAAATCTCCAGATCATACTTCAAGTC AAAAAGGTCCAACATCCCGGATCGAGTCTCCTCGATTTCCAAACTTACCG CCGTCAAGAAAAGTTAGATCATCTTTGGATTCGAAAGATGATCAATATTC AAGAAATATGGAAATCGTCGTCGATGGAGAAATAGAAGGAAACCATGCTC AACCAGATTCCCAAAGCACCACATTTCATACCAACCAACCAAATTCTAAT TCCGAAAACAGATCTATAAATTTGTCTGAAAATTCCTTATTCCGATTATC CAAGAACATCTCTAACACACCATTACCAGAACTCCAAAATAAAACACCAG AACCTACATCACAATTAATCAACCTAACTCTAATTGGATTCAAGTTCACC AATATCATTCTGTTAGATGCTACCAGAGCTGTTGGAGCTCACCTGGAGAT CTCTTTGCATTTGATTGATTGTTGGATTGGAAACAATGTCATTTTCACCA AGGACGATAGAATCCAAAATGAACAACATAACA

Coding sequence (CDS) from alignment at scaffold_91:364186..365918-

>TCONS_00073411 ID=TCONS_00073411|Name=TCONS_00073411|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_91:364186..365918- (Clytia hemisphaerica)
GTTGCAACGGAAAGAATGTTTACATTTCATATATCAACGGGCAAGATCTT
CCAGGTTGTGGTACTCAGGAATCGACCCCTTGTTCGTCATACCAATATGC
AGATCTGAATAACATCGTCACAAATAATGACGTAATCTTGTTCTTAAACA
TGGAATCAAAATTACCGGCTTTTCAAAAATCCTTGGAAATAAAACATTTG
AACCTGACATTCATTACCTTAGAACCGAAGAGAGTTAAATCAGGGGCAGA
TTCAAATGGACACAAATCTCCAGATCATACTTCAAGTCAAAAAGGTCCAA
CATCCCGGATCGAGTCTCCTCGATTTCCAAACTTACCGCCGTCAAGAAAA
GTTAGATCATCTTTGGATTCGAAAGATGATCAATATTCAAGAAATATGGA
AATCGTCGTCGATGGAGAAATAGAAGGAAACCATGCTCAACCAGATTCCC
AAAGCACCACATTTCATACCAACCAACCAAATTCTAATTCCGAAAACAGA
TCTATAAATTTGTCTGAAAATTCCTTATTCCGATTATCCAAGAACATCTC
TAACACACCATTACCAGAACTCCAAAATAAAACACCAGAACCTACATCAC
AATTAATCAACCTAACTCTAATTGGATTCAAGTTCACCAATATCATTCTG
TTAGATGCTACCAGAGCTGTTGGAGCTCACCTGGAGATCTCTTTGCATTT
GATTGATTGTTGGATTGGAAACAATGTCATTTTCACCAAGGACGATAGAA
TCCAAAATGAACAACATAACATGCAGGAAAATGATTTGGTCAGATACTTC
CTTTATATATTGTTACTGGCTCTCATCACCATAAAAGGTTGCAACGGAAA
GAATGTTTACATTTCATATATCAACGGGCAAGATCTTCCAGGTTGTGGTA
CTCAGGAATCGACCCCTTGTTCGTCATACCAATATGCAGATCTGAATAAC
ATCGTCACAAATAATGACGTAATCTTGTTCTTAAACATGGAATCAAAATT
ACCGGCTTTTCAAAAATCCTTGGAAATAAAACATTTGAACCTGACATTCA
TTACCTTAGAACCGAAGAGAGTTAAATCAGGGGCAGATTCAAATGGACAC
AAATCTCCAGATCATACTTCAAGTCAAAAAGGTCCAACATCCCGGATCGA
GTCTCCTCGATTTCCAAACTTACCGCCGTCAAGAAAAGTTAGATCATCTT
TGGATTCGAAAGATGATCAATATTCAAGAAATATGGAAATCGTCGTCGAT
GGAGAAATAGAAGGAAACCATGCTCAACCAGATTCCCAAAGCACCACATT
TCATACCAACCAACCAAATTCTAATTCCGAAAACAGATCTATAAATTTGT
CTGAAAATTCCTTATTCCGATTATCCAAGAACATCTCTAACACACCATTA
CCAGAACTCCAAAATAAAACACCAGAACCTACATCACAATTAATCAACCT
AACTCTAATTGGATTCAAGTTCACCAATATCATTCTGTTAGATGCTACCA
GAGCTGTTGGAGCTCACCTGGAGATCTCTTTGCATTTGATTGATTGTTGG
ATTGGAAACAATGTCATTTTCACCAAGGACGATAGAATCCAAAATGAACA
ACATAACATGCAGGAAAATGATTTGGTCAGATACTTCCTTTATATATTGT
TACTGGCTCTCATCACCATAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045556XLOC_045556Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073411-proteinTCONS_00073411-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073411-exon-scaffold_91-1575043694:365788..365918TCONS_00073411-exon-scaffold_91-1575043694:365788..365918Clytia hemisphaericaexon
TCONS_00073411-exon-scaffold_91-1575043694:364186..364956TCONS_00073411-exon-scaffold_91-1575043694:364186..364956Clytia hemisphaericaexon
TCONS_00073411-exon-scaffold_91-1510915933:365788..365918TCONS_00073411-exon-scaffold_91-1510915933:365788..365918Clytia hemisphaericaexon
TCONS_00073411-exon-scaffold_91-1510915933:364186..364956TCONS_00073411-exon-scaffold_91-1510915933:364186..364956Clytia hemisphaericaexon
TCONS_00073411-exon-scaffold_91-1491911889:365788..365918TCONS_00073411-exon-scaffold_91-1491911889:365788..365918Clytia hemisphaericaexon
TCONS_00073411-exon-scaffold_91-1491911889:364186..364956TCONS_00073411-exon-scaffold_91-1491911889:364186..364956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:364186..365918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0690386 0 0 0 0.129422 0.106873 0 0.409143 0.612861 0.141436 1.13373 0.343161 0.0768629 0 0.0544208 0.22779 0.148493 0.0724297 0 0 0.164896 0.196221 0 0 0 0.0578925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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