TCONS_00073409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073409
Unique NameTCONS_00073409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073409 ID=TCONS_00073409|Name=TCONS_00073409|organism=Clytia hemisphaerica|type=transcript|length=993bp
TGTGAAGTTGATAgattgataaaaaatatcaaaaatggaacAACAGATAT
GAATTGGGATTCCATTTGCCTCAAccTTGCAGGAGCAGGTGGACCAGTGG
TGTGTCGACCATCAACAATATTAATGTTATGGAATTACGATTGCAACATT
GTGAAACAGTTGAACCAATCACAAATCCTGGCCAAAGTCAATGATGATAC
TGCACTGCAAACATTAACCGGGAAAATCAATTTGGATTTATTGCTTGGTA
GTATTGTAAGGTCAAATGGTGACATCACTGGAGCAAGTGCAaccaaaatg
acttattttctGAAGAACCAGGAAGTGTATGTTGAAAGCCAGGGAAAAAA
TGTTGACCAGAAAGGAGAGGATTGGGAGACAGAGTTTTCTGATGTTTTCA
TCAAACAAAAGGTCACTGGTGGTTTTGACAAAgtatacattttttctttt
gtcagtcaacaAGACGAGAGTGGTGGACAAATTTCTgacgatttgaaatt
tttgtttgttgGTTATGTTTTGATCATTGCATACCTTGGTATCATGTTAG
GAAGTTTCTCCAGACTCGACCAAAAGgTTTGGTTAGCATTGTGTGGTGTT
TTGAACATTGGCCTTGCAATTGGTATTGCTTATGGATTATCAAGTGCATT
CCAACTCTTTTCAACACCCGTCCACAGTGTTCTACCCTTCTTGCTCCTAG
GTATGTTCCACTAcaaatacagtgtgtcccaaaaaaaaagcGGATAAAtc
tttatataaagtaaaatcctcaaactTCAATATCTAAACTGGGCTTAGAA
TAATAGCGCTTCGTTATGCAAACGTCATCATTATTTCATCTcccatttga
ccgaaattcaatcccacaatccttttcgtcttaattcaaaagtcttgaaa
gtcatttattttttatttttaattgagtgtaatttgcgtgtAAGCGTAAT
TAAcgcaaagggtgatgggatagaatttcggtcaaacagaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_91:340519..348072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073409 ID=TCONS_00073409|Name=TCONS_00073409|organism=Clytia hemisphaerica|type=transcript|length=7554bp|location=Sequence derived from alignment at scaffold_91:340519..348072- (Clytia hemisphaerica)
TGTGAAGTTGATAGATTGATAAAAAATATCAAAAATGGAACAACAGATAT GAATTGGGATTCCATTTGCCTCAAGTAAGATTCACGTTTATTGATTTCAC ATTTCCTTTGTCTGAAACTTCTTCTATCTAATTTTCTATATCCAGTTGTC TCAGAGAGACTTTGTTGGTTACTTTGTAATCGATATGACGCTCTGCTAGA AAATATCTTGTCATCAATGTTTTTATAGTTTCAATTTCAATGCTTCTCGT TGTCATAGCAACCATCGTTTTTATTGTCTTTTTTTCAAGCATGACCTTTC AATAAACCGAAACAATTATTAAAGATATATTTTCTTCTTTTAGCCTTGCA GGAGCAGGTGGACCAGTGGTGTGTCGACCATCAACAATATTAATGTTATG GAATTACGATTGCAACATTGTGAAACAGTTGAACCAATCACAAATCCTGG CCAAAGTCAATGATGATACTGCACTGCAAACGTATGTATCATTTTAAAAT TATTTCATTATTTACAATGCCAAGTCTTTTTTTTTCATCGGCATGACCTA ATTTTTCTTTGACATGATCAAGATCAGCGTGATGTGTTATTTGGGCTAAT TTTCCAGCTGGCACACAACGTTTTTCAACGCTTATCTAAAGTTCACACCG CTCATACAACGTTAGATGAAAGTTGCGTGCCAGCAGGGTTAATGCTTTGT TACTGTTATTTTTGTGATGCACCAATTTTGGCGCAATTTTCTTACTTGTA ATTAATGATGGTTATGTCTTAAATTCACCTACCTTATTGGAACTTATTTT CGCTGAATTAATTTTAGCATTTTTGGCAGTTTTTCGTCAAAATCGCAAAA ATACGAGCCTGTGAAATATTTTGAGAGTTAAAAACCCCGAAAATTAATTC CCGCGAAATACATTTTATCGAAGGAAAATCCCTAGGAAAATGAAAGAAAT TTGTCCAAAAAAGGGCAAAACTGCAAAAATTCCAGAATAAAAAAAAAACG CGAAAATTAAATCCTGCGCAAATTAAATCCTGCGCAAATTAGTTCCAATA AGGTAGTCTTTTCTCTAATAACCCTCATTAAAAAAAATATTTTCAATACC AGAGAAGTTAATAAAGAAATCTTTAGGGCAACATCGCCCAACGATATGGA CCATCTCAAGTCAAAACCCCCCAAAATCGCCTAACTTTTTTAAAAGAACT TTTTTGACTTTAACAAAGGATAAATAAATGAGGTTAACTTATTTTTATTT GCTACTTTACATGCTAACTCAAAATTTATTCAGGTTCACAANNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATATATAC ATTATAGAGGTTAAGTGTTGAATTTAAAGAGATATTCTTGGTCAAAGTAG GGTTAAAAATATGAGGTTAACTTGCACTGAGGTTAACCTAATGGTCTGTA AAGATAGATCAAAATTGGTATGAAATGTGAGGTTGAAGCAAAAATAAATG ATTGGGTTTTACTATATAATGATTGGGCAACAAGCTAGGCTAGAAAAATG AGGTTAATATTTCAAGTAGGGTGTAAAATTTGAGGTTATTTCACAAAAAC ACCCTAATGTGAGGTTAACAATGATATTTCAGTCTAATTTTGGATATCAG ACAAACAGTAGCCTATTATCAAAAACAACTAAACATGAAATATTATATTT TGGTCTAAAAAGTGAGGTTAACTGGTATATTAACTTGAGAGACGCAAGTA CCTGAGAAAGGGTTTGATTTTAAGCTTTCAGAAATCCTGCATAGAAATGC AAAGTTGTGTAATAGAAATAGTGGGATCCATTATTCAATGGTTGAGGAAC AAGGTTAGATAGAAAAAAATGAGGTTAATATCTTAGTTTGGGTACCAAAA GTGAGGTTATTTGTGAATTGGGCTTATAGGGTTTTTAAATTCTTTGTTGT ATACTTTAATGACTTATAAATCTGTTTTTGATATCAATACTGAGCTTAAC TTTTTATCGTAGTATCCCTTAAACGTTTTTCGTTCAGTTGTTGTTTGACA AAAACAATGAAGTTTGAAGGTATAAACTAAAACATCCTACTTTTTCAGGT TGTTTAACCTCATTTTAAGAACCTTTTTGGTCTCTTTCATATTTTTTTAG CTTAGTTACTTTATGAAAACTTTTAAAAAGTAATTTTGTTCCTGTAGCTT TAATAGAACTATTTAGATCTATTAGAAAATCAAATTTCTCACATTCCTTA ACATAGAGTTTTAATTTTAACCTCAATTTTTAACCCTACATTAGAGCAAA GATTGTCAATTTCATAAAAACCCTATCGATCTAAGGTTCTAGTATCATTT TACTTTTGTCCCATAACTTAATACACATGCTAGCAGAAGATATGGTTAAG AATGTGAGGTTACATGTTACCATTTTTTTAACCTCATGAATTGCACCTTT CTTGTGGGAAATCTCTAACCTTTTTTAGACAAGCTTGATATTCGAAGCCT TTTTGATGACTCCCTAATAATTTTTTCCCCGATAATTCAATAAGCGTCTC TATATTTTGAGGTTAACAAAAGTCTATAAATTGTCATATTAACCTCAAAT AACAAACCTTTTTCAAGTTTTTTTTTCATTTTTGGGTNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TTTTTTTTTCATTTTTGGGTATAAGCCATCAATTATGACCAACCCTCAAA ATTTCAACCTTTTTAGATAAAAAATGAAGATTATGTGGCCAATTATGTAA ATTTTTCCACTTTTTCCTCAAAAAAAATAACTTTTTCTTAGGTGACATTG ATTTGAGATTGTCCATATGAACGCATTTTATAATCCTCAAGGAAAATTTG TAGATTATTACCATTGTGATATTTTTTTGGTTCTAGATTAACCGGGAAAA TCAATTTGGATTTATTGCTTGGTAGTATTGTAAGGTCAAATGGTGACATC ACTGGAGCAAGTGCAACCAAAATGACTTATTTTCTGAAGAACCAGGAAGT GTATGTTGAAAGCCAGGGAAAAAATGTAAGACTTCTTTCTGGTGAAAATT TGAATACATAATTTTTTCATAGGTTACTTAGGGCTTTAAAATCATTTACA ATACATCTTTCAACTCTTAAAACATTATAAGACTGGGTCACAGTTTACCA GGTAGCATTGCTGTCAAAAATTTGTAGAGTTGATTTTCTCATAGACTCTC GCAGATTCTGATCTAATTTACTGCTGACAAGATACCAAATGAGTGTTCTA TTAGTATGGGCTAATGTAGAAAACATTTGTACTCCCAATGTTGAGGGGGT CATTTTTGGGAATATGACCCAGTTGGACTTTTTTCTAATTTTTTGGACCA CCCTGGACTCTTGACCTTACTGGCTTTTTAACCTTCATTTTACTAACCCC CCATATTTGCCATCACATTTTTCTGACCACCCTGGATTTTTGCACTCAAA AAACCCGACTATTCTAGAATGAGTGCAGACAAAAATGGCTAAATTTTAAA AACTTTGATTTTGTGTTTATTTTGCCCTTTATACCCATATTTAGATTAAA ACATTCAAGAAATACCCAAGAATAGCAATGCTGCAAAATATAAAAGGCTA AATTTTTCCTTGTATAGGTTGACCAGAAAGGAGAGGATTGGGAGACAGAG TTTTCTGATGTTTTCATCAAACAAAAGGTCACTGGTGGTTTTGACAAAGT ATACATTTTTTCTTTTGTCAGGTTAGAATTTATTTCCGTTTTCACTTTAT CTCAATCTACAGTAAAAGTATAGCCGATACTTGATTCCATTTTTCTGTGC ATTAATGTCTTTACAGATGTTTTTCATGCTTTTTAAAGTTTCGTAATCCC CCCCCCTTCAATTCTGTTAAGGCAATTCCTTTACTCAAGTTGAACGTTTG TTTCCATAATGGTGGAAGTCATTATGTCACTTGACAAAACATGAAAATAA CCTCTGTTCAACTTTACGATCTTTTCCAAATGTCTGTGGAGTCCGGGTTT TCAGGCTTTTTTAAAAACATTCAATTTTTCGACGTCACCTAAATTTCAAA GCAGTAGCGAGAAAAAAATGCATGCATAAAAGTTCTTCTTTCTTCATGAA ACTCACTAAGAAACCACAGATTTATGTAAAGCCTGAAGGGCTAGATGTCG TGCTTTAAGTCATGACAGGTAAAAAAAGTGAAGAAGAGAAAGAGTTGCTA TTGTTTTCGAAAATCTGCAAAGCTTCTGAATAGTCAAGCGCTGAAATCCT ATACTAATGTCACGTGACCTAGGTAGGATTTCCTACCTAACCACGGCACA CTTTCCAGACAAAGCACGACATCTAGTCCTTCACGCTTTATATAAATCTG TGCAAGTATAACGGAGTAAAAGATCTGGTTCTTGATAAGATACTCTCTAG TAAAGGCACTATTTGAACAGACTGTGGTTTTCATCTCCTAGTTGATGAAT TTCAATGCCAAATATTTTCTTATTTTTTGACTAAATTTCGATCAAATTTT TTACTTTCATTTTTTTTTCAGTCAACAAGACGAGAGTGGTGGACAAATTT CTGACGATTTGAAATTTTTGTTTGTTGGTTATGTTTTGATCATTGCATAC CTTGGTATCATGTTAGGAAGTTTCTCCAGACTCGACCAAAAGGTTTGTTC TCATTCATTCTTATTTCATATTCATTGGAAATTTCAGGTTTTTAAAGTTC TTTAACCCTATTCTTATTCATCGGAATCGGTTTTTAAAGTTCTTTAACCC TATTCGTTCGGGGGGGGGGGGCTGTTCCTGTTCAGAGGTCAAATTAATGT TAATAGCTCCTAAAATAATAGAGCTTTTGTCATGAAATTTTCTATAAATT CCTAACTTTTATTTAGCTTTAATAAAAAATTGACATCTAAAGATGTCTCA CACCTTGAGCATGATGACATTTCTGACAGTAAAGGGGCACAAAAATTGAC ACTTTTCCAATGCAATACAAATTTATTTTCTATGTCAAATATATCGTTTA AACCGTAATTTATTGAATATTTAGGATAAAAATAAGCATTTTAGACTCAG GGAACTTTTTTAAAGCTTTTGTTAGAAAACAATAGCTATTTGTAAGAACA AAGGAAATTCTCGGTTTTTGATCACTGTGGGCATGGTGAGTGACGTCATC AAAAAAATTATTTGTCAAAAGTTACCTTATGTGACAAAGATCTTGTGTGC CAAGATTTCATCCAAAAAGACCCACTAGATCAAAAGTTAAGGGGTGGTAC AGGAACACCCCCCTAGTTTTGAACCGCCCCTAAAAGCCTAGTATCAACGA TAGGTTTAAAGATGTTAACAATTTTATTCATAGATACCCACGTTATGATA AACTTTTTATTTATTTCTAAAATTATCTACATATATAATGTAACGCATGC ATCTAACATCGGTCGAACGANAGTCAAGCGCTGAAATCCTATACTAATGT CACGTGACCTAGGTAGGATTTCCTACCTAACCACGGCACACTTTCCAGAC AAAGCACGACATCTAGTCCTTCACGCTTTATATAAATCTGTGCAAGTATA ACGGAGTAAAAGATCTGGTTCTTGATAAGATACTCTCTAGTAAAGGCACT ATTTGAACAGACTGTGGTTTTCATCTCCTAGTTGATGAATTTCAATGCCA AATATTTTCTTAATTTTTGACTAAATTGGCTGTCTAAAACATGCTTTTAA GGTTTTTTACTTTCATTTTTTTTTCAGTCAACAAGACGAGAGTGGTGGAC AAATTTCTGACGATTTGAAATTTTTGTTTGTTGGTTATGTTTTGATCATT GCATACCTTGGTATCATGTTAGGAAGTTTCTCCAGACTCGACCAAAAGGT TTGTTCTCATTCATTCTTATTTCATATTCATTGGAAATTTCAGGTTTTTA AAGTTCTTTAACCCTATTCTTATTCATCGGAATCGGTTTTTAAAGTTCTT TAACCCTATTCGTTCGGGGGGGGGGGGCTGTTCCTGTTCAGAGGTCAAAT TAATGTTAATAGCTCCTAAAATAATAGAGCTTTTGTCATGAAATTTTCTA TAAATTCCTAACTTTTATTTAGCTTTAATAAAAAATTGACATCTAAAGAT GTCTCACACCTTGAGCATGATGACATTTCTGACAGTAAAGGGGCACAAAA ATTGACACTTTTCCAATGCAATACAAATTTATTTTCTATGTCAAATATAT CGTTTAAACCGTAATTTATTGAATATTTAGGATAAAAATAAGCATTTTAG ACTCAGGGAACTTTTTTAAAGCTTTTGTTAGAAAACAATAGCTATTTGTA AGAACAAAGGAAATTCTCGGTTTTTGATCACTGTGGGCATGGTGAGTGAC GTCATCAAAAAAATTATTTGTCAAAAGTTACCTTATGTGACAAAGATCTT GTGTGCCAAGATTTCATCCAAAAAGACCCACTAGATCAAAAGTTAAGGGG TGGTACAGGAACACCCCCCTAGTTTTGAACCGCCCCTAAAAGCCTAGTAT CAACGATAGGTTTAAAGATGTTAACAATTTTATTCATAGATACCCACGTT ATGATAAACTTTTTATTTATTTCTAAAATTATCTACATATATAATGTAAC GCATGCATCTAACATCGGTCGAACGAGAATGGTATTAACTGTTTTGAATA ATATCAGATGCATCATTATCTACGATTTTTTTTCAATTTACAATTTTCTT GGCATTGGAAAAAATCTTAAGAAAATACTGTTTCCATGTTGCCGATCTTT GACATAAGATTCTAATTCACTCGGATGAGATGGAGTTGTAAGCATTGTTA CTTTAATAATTGGTCATTTGAAGTAATAAAAATGACGCATTCTTTAGAAA AAGTATTAAAATTGTTTTATTACTAGTTAGAATTTGTAAAAACTCCATTT CGTCCAAATTCACTCATTCAAATTTCTTTTTTGATAGGTTTGGTTAGCAT TGTGTGGTGTTTTGAACATTGGCCTTGCAATTGGTATTGCTTATGGATTA TCAAGTGCATTCCAACTCTTTTCAACACCCGTCCACAGTGTTCTACCCTT CTTGCTCCTAGGTATGTTCCACTACAAATACAGTGTGTCCCAAAAAAAAA GCGGATAAATCTTTATATAAAGTAAAATCCTCAAACTTCAATATCTAAAC TGGGCTTAGAATAATAGCGCTTCGTTATGCAAACGTCATCATTATTTCAT CTCCCATTTGACCGAAATTCAATCCCACAATCCTTTTCGTCTTAATTCAA AAGTCTTGAAAGTCATTTATTTTTTATTTTTAATTGAGTGTAATTTGCGT GTAAGCGTAATTAACGCAAAGGGTGATGGGATAGAATTTCGGTCAAACAG AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045554XLOC_045554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073409-exon-scaffold_91-1575043694:347999..348072TCONS_00073409-exon-scaffold_91-1575043694:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:347592..347729TCONS_00073409-exon-scaffold_91-1575043694:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:344848..344986TCONS_00073409-exon-scaffold_91-1575043694:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:344152..344255TCONS_00073409-exon-scaffold_91-1575043694:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:343231..343351TCONS_00073409-exon-scaffold_91-1575043694:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:340519..340935TCONS_00073409-exon-scaffold_91-1575043694:340519..340935Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:347999..348072TCONS_00073409-exon-scaffold_91-1510915933:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:347592..347729TCONS_00073409-exon-scaffold_91-1510915933:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:344848..344986TCONS_00073409-exon-scaffold_91-1510915933:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:344152..344255TCONS_00073409-exon-scaffold_91-1510915933:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:343231..343351TCONS_00073409-exon-scaffold_91-1510915933:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:340519..340935TCONS_00073409-exon-scaffold_91-1510915933:340519..340935Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:347999..348072TCONS_00073409-exon-scaffold_91-1491911889:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:347592..347729TCONS_00073409-exon-scaffold_91-1491911889:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:344848..344986TCONS_00073409-exon-scaffold_91-1491911889:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:344152..344255TCONS_00073409-exon-scaffold_91-1491911889:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:343231..343351TCONS_00073409-exon-scaffold_91-1491911889:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:340519..340935TCONS_00073409-exon-scaffold_91-1491911889:340519..340935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:340519..348072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.26379 2.73084 2.79863 3.34753 19.0995 14.3803 7.09626 8.54012 4.03331 4.85625 7.40961 6.30887 6.62681 7.74991 3.86627 5.53654 12.3641 14.7591 7.61714 8.90312 31.2104 25.0942 5.63932 7.63037 30.2754 22.5235 5.63502 4.21013 1.1048 0.798633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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