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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073405 ID=TCONS_00073405|Name=TCONS_00073405|organism=Clytia hemisphaerica|type=transcript|length=367bp
GCGCATGCGCTAGAAGAGATTGGACCAGCAGTGGTACACGGAGGTTTCAG
TACCTTCTTAGCTTTCGTCTGTCTTGGTGCATCACAATCCTATGTTTTCT
CCACTTTCTTCAAGTTATTTTTCTTGGTCGTGGTGTTTGGTATGTTTCAC
GGTGTAGTGTATTTACCCATCGTGCTTAGCTTGGTCGGTCCCGAACCGTA
CGCATCTTCCGAACCTTCAACTCCATCAGCCTCCACCACAAGCGCTGGTA
AACCTCCATTACCAAACAATGGTGTCGAAATGACTGATGACAAAGAACCC
GAAACTAAGACAGaaaTGCTTCATTATTGAGATCCTTCACACAAATTTTT
AAATCACATCATCGATT Run BLAST on NCBI transcript from alignment at scaffold_91:322703..325530- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073405 ID=TCONS_00073405|Name=TCONS_00073405|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at scaffold_91:322703..325530- (Clytia hemisphaerica)
GCGCATGCGCTAGAAGAGATTGGACCAGCAGTGGTACACGGAGGTTTCAG
TACCTTCTTAGCTTTCGTCTGTCTTGGTGCATCACAATCCTATGTTTTCT
CCACTTTCTTCAAGGTAAGTTTGTGGGATTGTCTAAATACATCTATTACC
GTAAGTTGGTCTAATATCGACATCCCTCTTCTAATTCCGATACCCTTCTT
TAGAGAAAGGAGTAATATGAAAGCTTGAATCGCTGATTGAAAAAGGATTA
TTCCTCTCTAAGCACTAAACAAAGAAAAACAGTTTCAACTTTTCTATAAA
TTTCAGCTGATAAAAAGGGTGTGGGAATTAGAGGAGGGTTGTCGACATTA
GACCAAGTTACGGTAACCTTTAGCAGCGCTGTCAGCTTTTAAGGAGACTG
GTATAACGAAAATACAAGGAAAACTCTTCGGACGACAGTATTGAAAACAC
AATTGTAGGAAAGTGTAAAGTGTGAAAAGTGTAAGATACCCTTGCATTGA
AGTGAGAAAGTAACATCAAAATAGTTTAGCTATCTGAATACTAAAATAGT
TTATACTCCACCTCAGATACTCGGTAAAATGCTTCTTTGCCTTGGCCGGG
GATTTACTTGGTTTGATTCGTCTGTAGCCAAAATCATGCCGTCCGCTGAG
AACAAATTTTTCTTGTAAGTTCATTACCAGTCCCTTAAAAAGCTGACCGC
GCCGCTAAAGGTTGATAAAGTTGTATATTGTACTAAGTAACATTTTTTTT
CTCAATTCATAGGTAATTGGTAAATAAATGAGACATTTATAATGCGTGAC
AATGACTTAATTTGTAAAGGTTTGCAATGTTGTGTGTTACTTCTTCCTTT
TATGCAAGCTATATTTCGGCTTGGAAATGTTAGCGTCGTTGAGAAATCTA
AATCTTTACCACTTCTCGTTTTATTTCAGTTATTTTTCTTGGTCGTGGTG
TTTGGTATGTTTCACGGTGTAGTGTATTTACCCATCGTGCTTAGCTTGGT
CGGTCCCGAACCGTACGCATCTTCCGAACCTTCAACTCCATCAGCCTCCA
CCACAAGCGCTGGTAAACCTCCATTACCAAACAATGGTGTCGAAATGACT
GATGACAAAGAACCCGAAACTAAGACAGGTGAGTGGTTTATCCAGAGTTA
TCTGTTGTAATTAGAAAGAAAGACGACCGTGAAATCTAACTCTCTCTGAT
GTATAACTATACTACTAGGATGATTGCTGCATGGCAAAAGGCGGCAAAAT
TTCTGAATTGGAATAGTGATGCGGTTGGAAAATTCAATATTCTATATCTA
ACTAATCCTAGGATAAAATTTAATTCTAAATTGCCATGAGGAAGGGCTGA
ATCACTAATACGTGTGCTACGATAGACCGTTTTTTTAGCTGCAAATCTTT
TTAAAATCGCGTACATTTTTCATGGATTGATATTTAATTATTATGGTTGC
AAATGGCGGTGAAACACACATTATAACCATCTACTTATAATTTGGGGTGG
TCACAATCATTAAATCAATTTACTAACCACGCCCATTGCACTACATTGCA
TAACATCAAACAACGCCCAATAATTTACGCCCGACAACGACAAACTTGAC
AAATTGGTTGACGAACTGGATATTAATCTCACAACTAACTAAATTTTTCT
CTTGAAAGGTACTAATACTTTTTACTACTTATCTAATATTTTTTTGTCTT
TTAAACCTCCTTCTCACAGACCCGATAGGACTACTCTCAGTCAGTAGGGG
TTAAAGTAACGGGGGATTGGGGATTGATATCCATATGTTTTTTATGGCTA
GGGATTCGAATTCTATTGTTTTCATTGGCGATTGAAAAGATAGCACACTA
TTTTGCAGCGAGGTTTTATTTATTTGATTATTTCCAGCGGAGACAAAAAT
TGTTCACTTTGGACGATATTTTGGCCAATTTTTCCAGTTGGAGGGTGTCC
CACCGTATCTGTGAGAAAGTGGTGTTCTTTTGTTTCATTATATACGCTTT
GCACCCCTTACTACTAATATTTTTGGATGACCCGTGGCCATTCCGTTCAA
TTCAAAACGATGTGAGCCAAATATTATTTTGTTCAAGGTTACAACCTTTT
TTGAGCTAATTTTAGCAAAAAATTACAAGTAGAGAGGTCTAATTCTTTGA
TTCTACTAAACCCTACAGTAGCGTAGACTGGAGGAGTGCAAAATTTGTGA
AGGAGAGCAGATTTTTATGACACTATAATTTTCCAATAATACCATGAATA
CATGAATAGATAATTACAGTGTCATAAAGATCTGCTCTCCTACACAAATT
TTGCGCCCCTCTTGACTATGCTACGGCGCTAAACAAATAACCCATATAAC
CCAAATAACATTTGCTATTATTAATAATGACTAACACGCTTTTTTTTTTA
TAAGAATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTA
AGAATATGCTAAGAATATCACCATCATGGAATTTTGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATTTTTAGAGCATTC
TAAATCATAAATTGCCAATTACCCCCAAGTAATAAGAATGCTGTAAGAAT
ATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATGG
ATTTACACCATTCTTATAAAAAAGAAAGCGTGAATTTAATGCATGGATTC
AAATGACCAAATTTTTACGCTTTATCTGTTTCCAATTTAGCCAATAAATC
GCTTTCATTGTTCTTTTCTTTTAGAAATGCTTCATTATTGAGATCCTTCA
CACAAATTTTTAAATCACATCATCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073405-exon-scaffold_91-1575043694:325417..325530 | TCONS_00073405-exon-scaffold_91-1575043694:325417..325530 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1575043694:324403..324601 | TCONS_00073405-exon-scaffold_91-1575043694:324403..324601 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1575043694:322703..322756 | TCONS_00073405-exon-scaffold_91-1575043694:322703..322756 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1510915933:325417..325530 | TCONS_00073405-exon-scaffold_91-1510915933:325417..325530 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1510915933:324403..324601 | TCONS_00073405-exon-scaffold_91-1510915933:324403..324601 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1510915933:322703..322756 | TCONS_00073405-exon-scaffold_91-1510915933:322703..322756 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1491911889:325417..325530 | TCONS_00073405-exon-scaffold_91-1491911889:325417..325530 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1491911889:324403..324601 | TCONS_00073405-exon-scaffold_91-1491911889:324403..324601 | Clytia hemisphaerica | exon |
| TCONS_00073405-exon-scaffold_91-1491911889:322703..322756 | TCONS_00073405-exon-scaffold_91-1491911889:322703..322756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:322703..325530 - |
Blast
The following BLAST results are available for this feature:
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