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TCONS_00073405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073405
Unique NameTCONS_00073405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073405 ID=TCONS_00073405|Name=TCONS_00073405|organism=Clytia hemisphaerica|type=transcript|length=367bp
GCGCATGCGCTAGAAGAGATTGGACCAGCAGTGGTACACGGAGGTTTCAG
TACCTTCTTAGCTTTCGTCTGTCTTGGTGCATCACAATCCTATGTTTTCT
CCACTTTCTTCAAGTTATTTTTCTTGGTCGTGGTGTTTGGTATGTTTCAC
GGTGTAGTGTATTTACCCATCGTGCTTAGCTTGGTCGGTCCCGAACCGTA
CGCATCTTCCGAACCTTCAACTCCATCAGCCTCCACCACAAGCGCTGGTA
AACCTCCATTACCAAACAATGGTGTCGAAATGACTGATGACAAAGAACCC
GAAACTAAGACAGaaaTGCTTCATTATTGAGATCCTTCACACAAATTTTT
AAATCACATCATCGATT
Run BLAST on NCBI

transcript from alignment at scaffold_91:322703..325530-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073405 ID=TCONS_00073405|Name=TCONS_00073405|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at scaffold_91:322703..325530- (Clytia hemisphaerica)
GCGCATGCGCTAGAAGAGATTGGACCAGCAGTGGTACACGGAGGTTTCAG TACCTTCTTAGCTTTCGTCTGTCTTGGTGCATCACAATCCTATGTTTTCT CCACTTTCTTCAAGGTAAGTTTGTGGGATTGTCTAAATACATCTATTACC GTAAGTTGGTCTAATATCGACATCCCTCTTCTAATTCCGATACCCTTCTT TAGAGAAAGGAGTAATATGAAAGCTTGAATCGCTGATTGAAAAAGGATTA TTCCTCTCTAAGCACTAAACAAAGAAAAACAGTTTCAACTTTTCTATAAA TTTCAGCTGATAAAAAGGGTGTGGGAATTAGAGGAGGGTTGTCGACATTA GACCAAGTTACGGTAACCTTTAGCAGCGCTGTCAGCTTTTAAGGAGACTG GTATAACGAAAATACAAGGAAAACTCTTCGGACGACAGTATTGAAAACAC AATTGTAGGAAAGTGTAAAGTGTGAAAAGTGTAAGATACCCTTGCATTGA AGTGAGAAAGTAACATCAAAATAGTTTAGCTATCTGAATACTAAAATAGT TTATACTCCACCTCAGATACTCGGTAAAATGCTTCTTTGCCTTGGCCGGG GATTTACTTGGTTTGATTCGTCTGTAGCCAAAATCATGCCGTCCGCTGAG AACAAATTTTTCTTGTAAGTTCATTACCAGTCCCTTAAAAAGCTGACCGC GCCGCTAAAGGTTGATAAAGTTGTATATTGTACTAAGTAACATTTTTTTT CTCAATTCATAGGTAATTGGTAAATAAATGAGACATTTATAATGCGTGAC AATGACTTAATTTGTAAAGGTTTGCAATGTTGTGTGTTACTTCTTCCTTT TATGCAAGCTATATTTCGGCTTGGAAATGTTAGCGTCGTTGAGAAATCTA AATCTTTACCACTTCTCGTTTTATTTCAGTTATTTTTCTTGGTCGTGGTG TTTGGTATGTTTCACGGTGTAGTGTATTTACCCATCGTGCTTAGCTTGGT CGGTCCCGAACCGTACGCATCTTCCGAACCTTCAACTCCATCAGCCTCCA CCACAAGCGCTGGTAAACCTCCATTACCAAACAATGGTGTCGAAATGACT GATGACAAAGAACCCGAAACTAAGACAGGTGAGTGGTTTATCCAGAGTTA TCTGTTGTAATTAGAAAGAAAGACGACCGTGAAATCTAACTCTCTCTGAT GTATAACTATACTACTAGGATGATTGCTGCATGGCAAAAGGCGGCAAAAT TTCTGAATTGGAATAGTGATGCGGTTGGAAAATTCAATATTCTATATCTA ACTAATCCTAGGATAAAATTTAATTCTAAATTGCCATGAGGAAGGGCTGA ATCACTAATACGTGTGCTACGATAGACCGTTTTTTTAGCTGCAAATCTTT TTAAAATCGCGTACATTTTTCATGGATTGATATTTAATTATTATGGTTGC AAATGGCGGTGAAACACACATTATAACCATCTACTTATAATTTGGGGTGG TCACAATCATTAAATCAATTTACTAACCACGCCCATTGCACTACATTGCA TAACATCAAACAACGCCCAATAATTTACGCCCGACAACGACAAACTTGAC AAATTGGTTGACGAACTGGATATTAATCTCACAACTAACTAAATTTTTCT CTTGAAAGGTACTAATACTTTTTACTACTTATCTAATATTTTTTTGTCTT TTAAACCTCCTTCTCACAGACCCGATAGGACTACTCTCAGTCAGTAGGGG TTAAAGTAACGGGGGATTGGGGATTGATATCCATATGTTTTTTATGGCTA GGGATTCGAATTCTATTGTTTTCATTGGCGATTGAAAAGATAGCACACTA TTTTGCAGCGAGGTTTTATTTATTTGATTATTTCCAGCGGAGACAAAAAT TGTTCACTTTGGACGATATTTTGGCCAATTTTTCCAGTTGGAGGGTGTCC CACCGTATCTGTGAGAAAGTGGTGTTCTTTTGTTTCATTATATACGCTTT GCACCCCTTACTACTAATATTTTTGGATGACCCGTGGCCATTCCGTTCAA TTCAAAACGATGTGAGCCAAATATTATTTTGTTCAAGGTTACAACCTTTT TTGAGCTAATTTTAGCAAAAAATTACAAGTAGAGAGGTCTAATTCTTTGA TTCTACTAAACCCTACAGTAGCGTAGACTGGAGGAGTGCAAAATTTGTGA AGGAGAGCAGATTTTTATGACACTATAATTTTCCAATAATACCATGAATA CATGAATAGATAATTACAGTGTCATAAAGATCTGCTCTCCTACACAAATT TTGCGCCCCTCTTGACTATGCTACGGCGCTAAACAAATAACCCATATAAC CCAAATAACATTTGCTATTATTAATAATGACTAACACGCTTTTTTTTTTA TAAGAATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTA AGAATATGCTAAGAATATCACCATCATGGAATTTTGNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATTTTTAGAGCATTC TAAATCATAAATTGCCAATTACCCCCAAGTAATAAGAATGCTGTAAGAAT ATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATGG ATTTACACCATTCTTATAAAAAAGAAAGCGTGAATTTAATGCATGGATTC AAATGACCAAATTTTTACGCTTTATCTGTTTCCAATTTAGCCAATAAATC GCTTTCATTGTTCTTTTCTTTTAGAAATGCTTCATTATTGAGATCCTTCA CACAAATTTTTAAATCACATCATCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045553XLOC_045553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073405-exon-scaffold_91-1575043694:325417..325530TCONS_00073405-exon-scaffold_91-1575043694:325417..325530Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1575043694:324403..324601TCONS_00073405-exon-scaffold_91-1575043694:324403..324601Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1575043694:322703..322756TCONS_00073405-exon-scaffold_91-1575043694:322703..322756Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1510915933:325417..325530TCONS_00073405-exon-scaffold_91-1510915933:325417..325530Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1510915933:324403..324601TCONS_00073405-exon-scaffold_91-1510915933:324403..324601Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1510915933:322703..322756TCONS_00073405-exon-scaffold_91-1510915933:322703..322756Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1491911889:325417..325530TCONS_00073405-exon-scaffold_91-1491911889:325417..325530Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1491911889:324403..324601TCONS_00073405-exon-scaffold_91-1491911889:324403..324601Clytia hemisphaericaexon
TCONS_00073405-exon-scaffold_91-1491911889:322703..322756TCONS_00073405-exon-scaffold_91-1491911889:322703..322756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:322703..325530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.28302 8.47329 9.3593 5.28668 34.9323 24.2395 14.8575 14.4501 13.5745 15.3956 13.9977 18.3325 14.8873 21.0148 7.59988 15.4455 34.7197 36.9126 36.9042 28.3576 56.8527 43.0476 11.2427 13.5015 69.2893 39.6504 10.1762 6.38112 1.50186 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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