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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=transcript|length=1965bp
TGACCACTACCATCCCACAACTGCAGCGCAGgctattttgctctttttta
tgtgCTTACTCCAAGATACTATAACATGTTACCAGGTATACTNATATGGT
TTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACA
CAAAGAAAGAATGTGATACGCAGTGTACAGGTGAAGACAGGTGTTTCGCT
TACGAATATCGTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCT
CAGAACGCCAGAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCA
TAGAAACCATGCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAA
GAAGTTGGTGTTGTCATTTTCTTTGACGCTTTATCACAATTTAAGTACAC
ATTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATTCGGGCCAGGGAGA
GTATTCGTGTGCGGAACCAAAGGGAATGTGAACAACGTTGCCGTGACGAC
AAAGTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGA
AAACAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTG
TGAAATGGAGagattgtgaaatattggaaaCAGCTCAAGGGAAATATGAA
TCTTATGTTTTGGTGTTCAACCCGTAGAACAATCACATGTCTACTTCGCA
tgtattgtttcattttcaaaacaaagttaaagCGCATGCGTATTTATAAA
TTGTTAGCTGTTATTATACGCAATacacaaagaggaatgaatacacgctt
tttttataagaatattagggtgaaaattggccaaaccgtaagaataccct
aagaataccctcgggggtgaatttcacagaatttgataagaatacagtca
ttctGTATTTGAGTATGCTTTCTTTTtttagagataaattgaagcttcga
ggaagaaatgtaattttaacacaaattttcactcaaagtccaaaactctc
aaattaatcatttctcatgtttgtaaaataagtcaagtcaaaaaagtaag
aatacgttaagaatatttcaccctcaatcttggcactttcttaagaatac
ttgacccttaTCCAAAGtaaactattcttataaaaaaaagcgtgtacgta
AGGGTGGTAATGTACGatttaccatggtgattatgtatCTTGAGAtatca
aatgatttttttatgaataggaagctagttttaataaaatccgctagGAA
CTCCCTAGATTTTAAAACATGAACTAGCTCTATTTAGTTTTAATATAATC
TATCTGTGGGAAGCATATAGGGAAAGGAGAACTGAATCTCTGTttctaaa
atatatttttccgtATAACATTTCAATTTACTCTTTATGTTAtagttttt
tcaatattttaatgagattttaattttaatgagATTTTATTTCTTAGTGA
CTAGTACTAGTAAACGCTACATTTAGTATTGGCAATGGTGATTTTCGGAC
ATTTTTTTCTGGTTTAGGCGAGATCAACTTGAtcagttgttttacgggcc
cgaacGACcctgaaattctaaaaattgaaataaaaatgaaattgattttg
gtagtatGTTTCTATTTTCATTGCTCTACAGactgtcaaattttcaaaat
tttgtttgtttttccaaggctttgagaaatttatgttcaattttttaatt
tatctatgaattcgacctttttgtgtcttttcattttctatttctcattt
ttgtcaagatgtagtagtttttgctgcctttttaggagattttatagctG
GTATTCTacttttgttaaatatttcctattatataggaaatatttcttaa
aacggtaaaatttcttctccttcttcttctcctccaagtctaacgctcgg
ttttggtcaatttcgtgagtttgtacatgagtctctttttaaatcaagct
ccggcggtaaaaaNN Run BLAST on NCBI protein sequence of TCONS_00073401-protein >TCONS_00073401-protein ID=TCONS_00073401-protein|Name=TCONS_00073401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MVFFSQIKISGGGKDYNYTKKECDTQCTGEDRCFAYEYRGAKGRFDHQCW
LLRTPETSRLRRIISNRTIETMHGLNNYHNHFHKQEVGVVIFFDALSQFK
YTFEMKETRVKPGIRARESIRVRNQRECEQRCRDDKVCHVVNYNKETNDA
YENNCNLFTTDRLKCHSSVKWRDCEILETAQGKYESYVLVFNP Run BLAST on NCBI transcript from alignment at scaffold_91:275099..280210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=transcript|length=5112bp|location=Sequence derived from alignment at scaffold_91:275099..280210- (Clytia hemisphaerica)
TGACCACTACCATCCCACAACTGCAGCGCAGGCTATTTTGCTCTTTTTTA
TGTGCTTACTCCAAGATACTATAACATGTTACCAGGTATACTNATATGGT
TTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACA
CAAAGAAAGAATGTGATACGCAGTGTACAGGTGGGTTGTTTCGACGTTTA
TCTAACGATCACAACATCCATATAACGTTAACCTGAGATCAGATTGTGAA
TGTTTTCTGCACACCACGCTGAAGCCACAGATATCTGTAGAGCCCGAAGG
GCTAGATAGGCAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCAAAA
AAACTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAGGCTCGGAAA
ATATTGTACGGAAAAATCGCGGAACTCGTAAAATATTTCTCATATTGTAC
TCGCAAATGTCCGATAACTATTACATATCCGCATGATATAACAATAGGAA
AACACTGTCCTGATATAAAATATGTGTCTGATATGAAACGGGAACACTTA
TGTAAAAATAAAACCTTTAAGTTTAATTTCCAAATGCAAACAACGTTCTC
AAAATGAATGACGGAGAAAGTTCTTTTTGGCCATATTCCTGGAGGCTCGG
AAAACACGAGTTAAAAAACACGAGTTAAAAAACACGAGTTACAAAGAACA
CGAGTTACGTTAAATGTGACGTCAATTTCCCATTGATGACGTCACATTTA
ACGTAACTCGTGTTTTTTGTAACTCGTGTTTTTTAACTCGTGTTTTTAAC
TCGTGTTTTCCGAGCCTCATATTCCTGTTATGGGAATAATAACTTTCTAT
AAAATAACTTCAAGTACCTTCTTCAACCCTTCTAATAACAATGATTTTCA
TAGATCGGCATTCGACCTGTGACGACTGAAATACACGGGTTGCAAAATAA
CAGAAGAATTATATCAATCTAGAGCAGGTGTTGTCAGATAACAATTTGAC
TATCAACAGATTTATAAACTTGAATATGAAATAGTGGTTTTTTCCTGACA
ATTTTTGATGATTAAAGTTTGACTTAGGTCCCATTTACTAGTTATAGTTT
ATATGGTAACATAATATACCAATCAGAAATAAATGTCATTGTAACAAGCA
CATAAAAATTTCGAGTAAAAGCGTGATTTGTCTTCAGATTTTTTAATAAT
ATTTTATTAATCTACTCTAGGTGAAGACAGGTGTTTCGCTTACGAATATC
GTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCA
GAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCAT
GCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGGTA
CGTACACAAAATTACTCAAATGCACTCCAATAGACCTTTTCATAAATTAC
ATGTTTTTTTATAAGCATATAAAGATATTGCTTAGCATAAATCCCCGCCA
AATCCTTTAAGCAGCTTTTTTAATCATTATAGGTGTTGTCATTTTCTTTG
ACGCTTTATCACAATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTG
AAACCCGGTATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGA
ATGTGAACAACGTTGCCGTGACGACAAAGTAAGACATTTTCAAATTGTCT
CCCCAGTTTGCCCAAATTACTAATTACTAATAGTTTATACCAATATATCG
ATTCTTCTTGGTGGAGACAGAGGAATGTAAAGAGATGGAAAACAGCTTTT
CTGATTACTCAAAGTTCAACGATCACTTCTATTGAAAATTCTATTGTAAA
AACGTTAATTAGGTCATTAAATGAAAGTCCAGAAAAGACGGCTCGCCATA
CAAATCGGACGGTTTCTACATGATTTGACGATAAAAATGTTTGTTATCCA
TTTTTGCCGAATGCTAGTTCAATTTTTAAGAATAAGGAGCAATATTTTTA
CTAATGTATAGCAAAAGAAATTTTTAACGCAATGATATTAAATTGGTTCT
TGTAAAACTGTCAGAAGTCGAGTAAAATCGAGATGAAGTTATAATTTTCT
CGAGCTCTAGCTTTCCATATTATGGTGCGGTCATGATGCGGTTATATCAG
TAGAATCGCTAGGAAATTCTGAGTAAGAAGATATAGGTACCTTTTCGTAT
AGGAGAGGTGCACCCAGAATATAAGCCCTAAAAGTTTGCGCATAATCAGG
CTTGAAACAAAAGAATTTTGTCAGAACACGCTAATTATGCAGATTTTTTA
TAGCGACAACAAAAGAAACCTATTTACTCGACATAAACTCCCTTAAGGGC
AAAAGACCTGGTATATGACGAGCCGTTTNCAGATTTTTTATAGCGACAAC
AAAAGAAACCTATTTACTCGACATAAACTCTCTTAAGGGCAAGATACCTG
GTATATGACTAGCCGTTTTTCCATTGTTTTCAATAAGCTGTTTTCTCATC
TCTTTGCATTACTCTGGCGGAGAATACTCTAGGCTACGTCATATCTTCCT
TCGTTTCGAGCGTAAACTCTTACTCTTCGGGATATGCGCGCTGCTCTTGT
TTTGAATATTGAAATTCTCTGGATAAATCGCATGCGCACTGAGGTTTTAA
TGAAACAATAGAGAGTTTCAAAGTTGTCTATTATATTTAAACCAATTAAA
AAGCGAATTCCCGGTGGGGGTCACTAGTGGCCGCCTATAGTAGTGCCTAT
AGACCAAGAATAAAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTACAGT
AGACTAAGAATACTCTAGGCTTTGTTGCCTGAAGGGACCCGAAGATATGT
TCAAATTAATAAGACATTCGATTTGCAATACTTCTTCACAATTCATGATA
TTCATGACGTAATGTCTTCTACGGAAAGACCCCGGTTTTTGCCAGTAGTG
GCAAATTTTATACGACTTTTGTCAAGTTTAAATTTGCGACTACGAGGGGA
AGAAAGGACCTTATTCGCAGCAATCTCAAATCTTACTTAAACGAAGTTTT
TCAATTTTGTCAGTGGGTCCAATTGACCCTAAAGTGACTGTAAATGGGTC
CAGGGCACTCAGTTGTGACTCTCGAGTCCAACCCTGACCCTAACTGGTAG
TGACCCAATAAGCGACAAATACGTCATTAAAGAACGTCACAATACGTCAC
TAAAGAACGTCACATTTTCGTCTAATCAATAAAATGGTTTAGGCCCTCCA
CAACCCCGACCGAAAAAGTGAGTCCACCCCTCCCGCATTATTTGCATTGG
TTCTAGCCATTAAATATCCACTACCGGTTGAAAATTACGCATGCGCAGTA
TTATGAAATAAAATTGCGAGAAAGGTCCTTACTCCCTGTGCTACTGGCTA
AAATCGGGGTTTTTCCGTAAAAAATATTACGTCATGAATATCATGAATTT
TTTTTAAAGGTAAACACAAACAACACACAAACAATGGATCCCCCTAAACT
CGATCCAATCCTTTTTTGACACATTTTTCTATTGTCTATAGGTGCGAACA
AAGGACGGTACGGTTTTAGTGGGATAAAACGGGCAAAAAACTACCCGCGC
GGCAATTGGCGGAAAAGGTGTACTTATACTTCTTTACAATTTTTCTTAAG
GTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAA
CAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGA
AATGGAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCT
TATGTTTTGGTGTTCAACCCGTAGAACAATCACATGTCTACTTCGCATGT
ATTGTTTCATTTTCAAAACAAAGTTAAAGCGCATGCGTATTTATAAATTG
TTAGCTGTTATTATACGCAATACACAAAGAGGAATGAATACACGCTTTTT
TTATAAGAATATTAGGGTGAAAATTGGCCAAACCGTAAGAATACCCTAAG
AATACCCTCGGGGGTGAATTTCACAGAATTTGATAAGAATACAGTCATTC
TGTATTTGAGTATGCTTTCTTTTTTTAGAGATAAATTGAAGCTTCGAGGA
AGAAATGTAATTTTAACACAAATTTTCACTCAAAGTCCAAAACTCTCAAA
TTAATCATTTCTCATGTTTGTAAAATAAGTCAAGTCAAAAAAGTAAGAAT
ACGTTAAGAATATTTCACCCTCAATCTTGGCACTTTCTTAAGAATACTTG
ACCCTTATCCAAAGTAAACTATTCTTATAAAAAAAAGCGTGTACGTAAGG
GTGGTAATGTACGATTTACCATGGTGATTATGTATCTTGAGATATCAAAT
GATTTTTTTATGAATAGGAAGCTAGTTTTAATAAAATCCGCTAGGAACTC
CCTAGATTTTAAAACATGAACTAGCTCTATTTAGTTTTAATATAATCTAT
CTGTGGGAAGCATATAGGGAAAGGAGAACTGAATCTCTGTTTCTAAAATA
TATTTTTCCGTATAACATTTCAATTTACTCTTTATGTTATAGTTTTTTCA
ATATTTTAATGAGATTTTAATTTTAATGAGATTTTATTTCTTAGTGACTA
GTACTAGTAAACGCTACATTTAGTATTGGCAATGGTGATTTTCGGACATT
TTTTTCTGGTTTAGGCGAGATCAACTTGATCAGTTGTTTTACGGGCCCGA
ACGACCCTGAAATTCTAAAAATTGAAATAAAAATGAAATTGATTTTGGTA
GTATGTTTCTATTTTCATTGCTCTACAGACTGTCAAATTTTCAAAATTTT
GTTTGTTTTTCCAAGGCTTTGAGAAATTTATGTTCAATTTTTTAATTTAT
CTATGAATTCGACCTTTTTGTGTCTTTTCATTTTCTATTTCTCATTTTTG
TCAAGATGTAGTAGTTTTTGCTGCCTTTTTAGGAGATTTTATAGCTGGTA
TTCTACTTTTGTTAAATATTTCCTATTATATAGGAAATATTTCTTAAAAC
GGTAAAATTTCTTCTCCTTCTTCTTCTCCTCCAAGTCTAACGCTCGGTTT
TGGTCAATTTCGTGAGTTTGTACATGAGTCTCTTTTTAAATCAAGCTCCG
GCGGTAAAAANN Coding sequence (CDS) from alignment at scaffold_91:275099..280210- >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_91:275099..280210- (Clytia hemisphaerica)
GTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAA
CAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGA
AATGGAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCT
TATGTTTTGGTGTTCAACCCGTAGGTGTTGTCATTTTCTTTGACGCTTTA
TCACAATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTGAAACCCGG
TATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGAATGTGAAC
AACGTTGCCGTGACGACAAAGTGAAGACAGGTGTTTCGCTTACGAATATC
GTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCA
GAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCAT
GCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGATG
GTTTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTA
CACAAAGAAAGAATGTGATACGCAGTGTACAGGTGTGTCACGTGGTTAAT
TACAACAAAGAAACAAATGATGCTTATGAAAACAATTGCAATCTGTTCAC
TACAGATCGTTTGAAATGTCATTCAAGTGTGAAATGGAGAGATTGTGAAA
TATTGGAAACAGCTCAAGGGAAATATGAATCTTATGTTTTGGTGTTCAAC
CCGTAGGTGTTGTCATTTTCTTTGACGCTTTATCACAATTTAAGTACACA
TTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATTCGGGCCAGGGAGAG
TATTCGTGTGCGGAACCAAAGGGAATGTGAACAACGTTGCCGTGACGACA
AAGTGAAGACAGGTGTTTCGCTTACGAATATCGTGGAGCAAAGGGGAGAT
TTGACCATCAATGCTGGTTGCTCAGAACGCCAGAAACCTCACGGCTTAGA
AGAATAATATCGAACCGAACCATAGAAACCATGCATGGGTTGAATAATTA
TCATAATCATTTTCATAAGCAAGAAGTTGATGGTTTTCTTTAGTCAGATC
AAAATAAGTGGTGGAGGGAAAGATTATAATTACACAAAGAAAGAATGTGA
TACGCAGTGTACAGGTGTGTCACGTGGTTAATTACAACAAAGAAACAAAT
GATGCTTATGAAAACAATTGCAATCTGTTCACTACAGATCGTTTGAAATG
TCATTCAAGTGTGAAATGGAGAGATTGTGAAATATTGGAAACAGCTCAAG
GGAAATATGAATCTTATGTTTTGGTGTTCAACCCGTAGGTGTTGTCATTT
TCTTTGACGCTTTATCACAATTTAAGTACACATTCGAGATGAAAGAGACT
CGTGTGAAACCCGGTATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCA
AAGGGAATGTGAACAACGTTGCCGTGACGACAAAGTGAAGACAGGTGTTT
CGCTTACGAATATCGTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGT
TGCTCAGAACGCCAGAAACCTCACGGCTTAGAAGAATAATATCGAACCGA
ACCATAGAAACCATGCATGGGTTGAATAATTATCATAATCATTTTCATAA
GCAAGAAGTTGATGGTTTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGG
AAAGATTATAATTACACAAAGAAAGAATGTGATACGCAGTGTACAGGTGT
GTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAACAAT
TGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGAAATG
GAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCTTATG
TTTTGGTGTTCAACCCGTAGGTGTTGTCATTTTCTTTGACGCTTTATCAC
AATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATT
CGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGAATGTGAACAACG
TTGCCGTGACGACAAAGTGAAGACAGGTGTTTCGCTTACGAATATCGTGG
AGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCAGAAA
CCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCATGCAT
GGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGATGGTTT
TCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACACA
AAGAAAGAATGTGATACGCAGTGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073401-exon-scaffold_91-1575043694:280031..280210 | TCONS_00073401-exon-scaffold_91-1575043694:280031..280210 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1575043694:278814..278990 | TCONS_00073401-exon-scaffold_91-1575043694:278814..278990 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1575043694:278533..278678 | TCONS_00073401-exon-scaffold_91-1575043694:278533..278678 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1575043694:275099..276560 | TCONS_00073401-exon-scaffold_91-1575043694:275099..276560 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1510915933:280031..280210 | TCONS_00073401-exon-scaffold_91-1510915933:280031..280210 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1510915933:278814..278990 | TCONS_00073401-exon-scaffold_91-1510915933:278814..278990 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1510915933:278533..278678 | TCONS_00073401-exon-scaffold_91-1510915933:278533..278678 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1510915933:275099..276560 | TCONS_00073401-exon-scaffold_91-1510915933:275099..276560 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1491911889:280031..280210 | TCONS_00073401-exon-scaffold_91-1491911889:280031..280210 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1491911889:278814..278990 | TCONS_00073401-exon-scaffold_91-1491911889:278814..278990 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1491911889:278533..278678 | TCONS_00073401-exon-scaffold_91-1491911889:278533..278678 | Clytia hemisphaerica | exon |
| TCONS_00073401-exon-scaffold_91-1491911889:275099..276560 | TCONS_00073401-exon-scaffold_91-1491911889:275099..276560 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:275099..280210 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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