Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=transcript|length=1965bp TGACCACTACCATCCCACAACTGCAGCGCAGgctattttgctctttttta tgtgCTTACTCCAAGATACTATAACATGTTACCAGGTATACTNATATGGT TTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACA CAAAGAAAGAATGTGATACGCAGTGTACAGGTGAAGACAGGTGTTTCGCT TACGAATATCGTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCT CAGAACGCCAGAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCA TAGAAACCATGCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAA GAAGTTGGTGTTGTCATTTTCTTTGACGCTTTATCACAATTTAAGTACAC ATTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATTCGGGCCAGGGAGA GTATTCGTGTGCGGAACCAAAGGGAATGTGAACAACGTTGCCGTGACGAC AAAGTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGA AAACAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTG TGAAATGGAGagattgtgaaatattggaaaCAGCTCAAGGGAAATATGAA TCTTATGTTTTGGTGTTCAACCCGTAGAACAATCACATGTCTACTTCGCA tgtattgtttcattttcaaaacaaagttaaagCGCATGCGTATTTATAAA TTGTTAGCTGTTATTATACGCAATacacaaagaggaatgaatacacgctt tttttataagaatattagggtgaaaattggccaaaccgtaagaataccct aagaataccctcgggggtgaatttcacagaatttgataagaatacagtca ttctGTATTTGAGTATGCTTTCTTTTtttagagataaattgaagcttcga ggaagaaatgtaattttaacacaaattttcactcaaagtccaaaactctc aaattaatcatttctcatgtttgtaaaataagtcaagtcaaaaaagtaag aatacgttaagaatatttcaccctcaatcttggcactttcttaagaatac ttgacccttaTCCAAAGtaaactattcttataaaaaaaagcgtgtacgta AGGGTGGTAATGTACGatttaccatggtgattatgtatCTTGAGAtatca aatgatttttttatgaataggaagctagttttaataaaatccgctagGAA CTCCCTAGATTTTAAAACATGAACTAGCTCTATTTAGTTTTAATATAATC TATCTGTGGGAAGCATATAGGGAAAGGAGAACTGAATCTCTGTttctaaa atatatttttccgtATAACATTTCAATTTACTCTTTATGTTAtagttttt tcaatattttaatgagattttaattttaatgagATTTTATTTCTTAGTGA CTAGTACTAGTAAACGCTACATTTAGTATTGGCAATGGTGATTTTCGGAC ATTTTTTTCTGGTTTAGGCGAGATCAACTTGAtcagttgttttacgggcc cgaacGACcctgaaattctaaaaattgaaataaaaatgaaattgattttg gtagtatGTTTCTATTTTCATTGCTCTACAGactgtcaaattttcaaaat tttgtttgtttttccaaggctttgagaaatttatgttcaattttttaatt tatctatgaattcgacctttttgtgtcttttcattttctatttctcattt ttgtcaagatgtagtagtttttgctgcctttttaggagattttatagctG GTATTCTacttttgttaaatatttcctattatataggaaatatttcttaa aacggtaaaatttcttctccttcttcttctcctccaagtctaacgctcgg ttttggtcaatttcgtgagtttgtacatgagtctctttttaaatcaagct ccggcggtaaaaaNN Run BLAST on NCBI protein sequence of TCONS_00073401-protein >TCONS_00073401-protein ID=TCONS_00073401-protein|Name=TCONS_00073401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MVFFSQIKISGGGKDYNYTKKECDTQCTGEDRCFAYEYRGAKGRFDHQCW LLRTPETSRLRRIISNRTIETMHGLNNYHNHFHKQEVGVVIFFDALSQFK YTFEMKETRVKPGIRARESIRVRNQRECEQRCRDDKVCHVVNYNKETNDA YENNCNLFTTDRLKCHSSVKWRDCEILETAQGKYESYVLVFNP Run BLAST on NCBI transcript from alignment at scaffold_91:275099..280210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=transcript|length=5112bp|location=Sequence derived from alignment at scaffold_91:275099..280210- (Clytia hemisphaerica) TGACCACTACCATCCCACAACTGCAGCGCAGGCTATTTTGCTCTTTTTTA
TGTGCTTACTCCAAGATACTATAACATGTTACCAGGTATACTNATATGGT
TTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACA
CAAAGAAAGAATGTGATACGCAGTGTACAGGTGGGTTGTTTCGACGTTTA
TCTAACGATCACAACATCCATATAACGTTAACCTGAGATCAGATTGTGAA
TGTTTTCTGCACACCACGCTGAAGCCACAGATATCTGTAGAGCCCGAAGG
GCTAGATAGGCAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCAAAA
AAACTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAGGCTCGGAAA
ATATTGTACGGAAAAATCGCGGAACTCGTAAAATATTTCTCATATTGTAC
TCGCAAATGTCCGATAACTATTACATATCCGCATGATATAACAATAGGAA
AACACTGTCCTGATATAAAATATGTGTCTGATATGAAACGGGAACACTTA
TGTAAAAATAAAACCTTTAAGTTTAATTTCCAAATGCAAACAACGTTCTC
AAAATGAATGACGGAGAAAGTTCTTTTTGGCCATATTCCTGGAGGCTCGG
AAAACACGAGTTAAAAAACACGAGTTAAAAAACACGAGTTACAAAGAACA
CGAGTTACGTTAAATGTGACGTCAATTTCCCATTGATGACGTCACATTTA
ACGTAACTCGTGTTTTTTGTAACTCGTGTTTTTTAACTCGTGTTTTTAAC
TCGTGTTTTCCGAGCCTCATATTCCTGTTATGGGAATAATAACTTTCTAT
AAAATAACTTCAAGTACCTTCTTCAACCCTTCTAATAACAATGATTTTCA
TAGATCGGCATTCGACCTGTGACGACTGAAATACACGGGTTGCAAAATAA
CAGAAGAATTATATCAATCTAGAGCAGGTGTTGTCAGATAACAATTTGAC
TATCAACAGATTTATAAACTTGAATATGAAATAGTGGTTTTTTCCTGACA
ATTTTTGATGATTAAAGTTTGACTTAGGTCCCATTTACTAGTTATAGTTT
ATATGGTAACATAATATACCAATCAGAAATAAATGTCATTGTAACAAGCA
CATAAAAATTTCGAGTAAAAGCGTGATTTGTCTTCAGATTTTTTAATAAT
ATTTTATTAATCTACTCTAGGTGAAGACAGGTGTTTCGCTTACGAATATC
GTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCA
GAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCAT
GCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGGTA
CGTACACAAAATTACTCAAATGCACTCCAATAGACCTTTTCATAAATTAC
ATGTTTTTTTATAAGCATATAAAGATATTGCTTAGCATAAATCCCCGCCA
AATCCTTTAAGCAGCTTTTTTAATCATTATAGGTGTTGTCATTTTCTTTG
ACGCTTTATCACAATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTG
AAACCCGGTATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGA
ATGTGAACAACGTTGCCGTGACGACAAAGTAAGACATTTTCAAATTGTCT
CCCCAGTTTGCCCAAATTACTAATTACTAATAGTTTATACCAATATATCG
ATTCTTCTTGGTGGAGACAGAGGAATGTAAAGAGATGGAAAACAGCTTTT
CTGATTACTCAAAGTTCAACGATCACTTCTATTGAAAATTCTATTGTAAA
AACGTTAATTAGGTCATTAAATGAAAGTCCAGAAAAGACGGCTCGCCATA
CAAATCGGACGGTTTCTACATGATTTGACGATAAAAATGTTTGTTATCCA
TTTTTGCCGAATGCTAGTTCAATTTTTAAGAATAAGGAGCAATATTTTTA
CTAATGTATAGCAAAAGAAATTTTTAACGCAATGATATTAAATTGGTTCT
TGTAAAACTGTCAGAAGTCGAGTAAAATCGAGATGAAGTTATAATTTTCT
CGAGCTCTAGCTTTCCATATTATGGTGCGGTCATGATGCGGTTATATCAG
TAGAATCGCTAGGAAATTCTGAGTAAGAAGATATAGGTACCTTTTCGTAT
AGGAGAGGTGCACCCAGAATATAAGCCCTAAAAGTTTGCGCATAATCAGG
CTTGAAACAAAAGAATTTTGTCAGAACACGCTAATTATGCAGATTTTTTA
TAGCGACAACAAAAGAAACCTATTTACTCGACATAAACTCCCTTAAGGGC
AAAAGACCTGGTATATGACGAGCCGTTTNCAGATTTTTTATAGCGACAAC
AAAAGAAACCTATTTACTCGACATAAACTCTCTTAAGGGCAAGATACCTG
GTATATGACTAGCCGTTTTTCCATTGTTTTCAATAAGCTGTTTTCTCATC
TCTTTGCATTACTCTGGCGGAGAATACTCTAGGCTACGTCATATCTTCCT
TCGTTTCGAGCGTAAACTCTTACTCTTCGGGATATGCGCGCTGCTCTTGT
TTTGAATATTGAAATTCTCTGGATAAATCGCATGCGCACTGAGGTTTTAA
TGAAACAATAGAGAGTTTCAAAGTTGTCTATTATATTTAAACCAATTAAA
AAGCGAATTCCCGGTGGGGGTCACTAGTGGCCGCCTATAGTAGTGCCTAT
AGACCAAGAATAAAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTACAGT
AGACTAAGAATACTCTAGGCTTTGTTGCCTGAAGGGACCCGAAGATATGT
TCAAATTAATAAGACATTCGATTTGCAATACTTCTTCACAATTCATGATA
TTCATGACGTAATGTCTTCTACGGAAAGACCCCGGTTTTTGCCAGTAGTG
GCAAATTTTATACGACTTTTGTCAAGTTTAAATTTGCGACTACGAGGGGA
AGAAAGGACCTTATTCGCAGCAATCTCAAATCTTACTTAAACGAAGTTTT
TCAATTTTGTCAGTGGGTCCAATTGACCCTAAAGTGACTGTAAATGGGTC
CAGGGCACTCAGTTGTGACTCTCGAGTCCAACCCTGACCCTAACTGGTAG
TGACCCAATAAGCGACAAATACGTCATTAAAGAACGTCACAATACGTCAC
TAAAGAACGTCACATTTTCGTCTAATCAATAAAATGGTTTAGGCCCTCCA
CAACCCCGACCGAAAAAGTGAGTCCACCCCTCCCGCATTATTTGCATTGG
TTCTAGCCATTAAATATCCACTACCGGTTGAAAATTACGCATGCGCAGTA
TTATGAAATAAAATTGCGAGAAAGGTCCTTACTCCCTGTGCTACTGGCTA
AAATCGGGGTTTTTCCGTAAAAAATATTACGTCATGAATATCATGAATTT
TTTTTAAAGGTAAACACAAACAACACACAAACAATGGATCCCCCTAAACT
CGATCCAATCCTTTTTTGACACATTTTTCTATTGTCTATAGGTGCGAACA
AAGGACGGTACGGTTTTAGTGGGATAAAACGGGCAAAAAACTACCCGCGC
GGCAATTGGCGGAAAAGGTGTACTTATACTTCTTTACAATTTTTCTTAAG
GTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAA
CAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGA
AATGGAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCT
TATGTTTTGGTGTTCAACCCGTAGAACAATCACATGTCTACTTCGCATGT
ATTGTTTCATTTTCAAAACAAAGTTAAAGCGCATGCGTATTTATAAATTG
TTAGCTGTTATTATACGCAATACACAAAGAGGAATGAATACACGCTTTTT
TTATAAGAATATTAGGGTGAAAATTGGCCAAACCGTAAGAATACCCTAAG
AATACCCTCGGGGGTGAATTTCACAGAATTTGATAAGAATACAGTCATTC
TGTATTTGAGTATGCTTTCTTTTTTTAGAGATAAATTGAAGCTTCGAGGA
AGAAATGTAATTTTAACACAAATTTTCACTCAAAGTCCAAAACTCTCAAA
TTAATCATTTCTCATGTTTGTAAAATAAGTCAAGTCAAAAAAGTAAGAAT
ACGTTAAGAATATTTCACCCTCAATCTTGGCACTTTCTTAAGAATACTTG
ACCCTTATCCAAAGTAAACTATTCTTATAAAAAAAAGCGTGTACGTAAGG
GTGGTAATGTACGATTTACCATGGTGATTATGTATCTTGAGATATCAAAT
GATTTTTTTATGAATAGGAAGCTAGTTTTAATAAAATCCGCTAGGAACTC
CCTAGATTTTAAAACATGAACTAGCTCTATTTAGTTTTAATATAATCTAT
CTGTGGGAAGCATATAGGGAAAGGAGAACTGAATCTCTGTTTCTAAAATA
TATTTTTCCGTATAACATTTCAATTTACTCTTTATGTTATAGTTTTTTCA
ATATTTTAATGAGATTTTAATTTTAATGAGATTTTATTTCTTAGTGACTA
GTACTAGTAAACGCTACATTTAGTATTGGCAATGGTGATTTTCGGACATT
TTTTTCTGGTTTAGGCGAGATCAACTTGATCAGTTGTTTTACGGGCCCGA
ACGACCCTGAAATTCTAAAAATTGAAATAAAAATGAAATTGATTTTGGTA
GTATGTTTCTATTTTCATTGCTCTACAGACTGTCAAATTTTCAAAATTTT
GTTTGTTTTTCCAAGGCTTTGAGAAATTTATGTTCAATTTTTTAATTTAT
CTATGAATTCGACCTTTTTGTGTCTTTTCATTTTCTATTTCTCATTTTTG
TCAAGATGTAGTAGTTTTTGCTGCCTTTTTAGGAGATTTTATAGCTGGTA
TTCTACTTTTGTTAAATATTTCCTATTATATAGGAAATATTTCTTAAAAC
GGTAAAATTTCTTCTCCTTCTTCTTCTCCTCCAAGTCTAACGCTCGGTTT
TGGTCAATTTCGTGAGTTTGTACATGAGTCTCTTTTTAAATCAAGCTCCG
GCGGTAAAAANN Coding sequence (CDS) from alignment at scaffold_91:275099..280210- >TCONS_00073401 ID=TCONS_00073401|Name=TCONS_00073401|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_91:275099..280210- (Clytia hemisphaerica) GTGTGTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAA CAATTGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGA AATGGAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCT TATGTTTTGGTGTTCAACCCGTAGGTGTTGTCATTTTCTTTGACGCTTTA TCACAATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTGAAACCCGG TATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGAATGTGAAC AACGTTGCCGTGACGACAAAGTGAAGACAGGTGTTTCGCTTACGAATATC GTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCA GAAACCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCAT GCATGGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGATG GTTTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTA CACAAAGAAAGAATGTGATACGCAGTGTACAGGTGTGTCACGTGGTTAAT TACAACAAAGAAACAAATGATGCTTATGAAAACAATTGCAATCTGTTCAC TACAGATCGTTTGAAATGTCATTCAAGTGTGAAATGGAGAGATTGTGAAA TATTGGAAACAGCTCAAGGGAAATATGAATCTTATGTTTTGGTGTTCAAC CCGTAGGTGTTGTCATTTTCTTTGACGCTTTATCACAATTTAAGTACACA TTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATTCGGGCCAGGGAGAG TATTCGTGTGCGGAACCAAAGGGAATGTGAACAACGTTGCCGTGACGACA AAGTGAAGACAGGTGTTTCGCTTACGAATATCGTGGAGCAAAGGGGAGAT TTGACCATCAATGCTGGTTGCTCAGAACGCCAGAAACCTCACGGCTTAGA AGAATAATATCGAACCGAACCATAGAAACCATGCATGGGTTGAATAATTA TCATAATCATTTTCATAAGCAAGAAGTTGATGGTTTTCTTTAGTCAGATC AAAATAAGTGGTGGAGGGAAAGATTATAATTACACAAAGAAAGAATGTGA TACGCAGTGTACAGGTGTGTCACGTGGTTAATTACAACAAAGAAACAAAT GATGCTTATGAAAACAATTGCAATCTGTTCACTACAGATCGTTTGAAATG TCATTCAAGTGTGAAATGGAGAGATTGTGAAATATTGGAAACAGCTCAAG GGAAATATGAATCTTATGTTTTGGTGTTCAACCCGTAGGTGTTGTCATTT TCTTTGACGCTTTATCACAATTTAAGTACACATTCGAGATGAAAGAGACT CGTGTGAAACCCGGTATTCGGGCCAGGGAGAGTATTCGTGTGCGGAACCA AAGGGAATGTGAACAACGTTGCCGTGACGACAAAGTGAAGACAGGTGTTT CGCTTACGAATATCGTGGAGCAAAGGGGAGATTTGACCATCAATGCTGGT TGCTCAGAACGCCAGAAACCTCACGGCTTAGAAGAATAATATCGAACCGA ACCATAGAAACCATGCATGGGTTGAATAATTATCATAATCATTTTCATAA GCAAGAAGTTGATGGTTTTCTTTAGTCAGATCAAAATAAGTGGTGGAGGG AAAGATTATAATTACACAAAGAAAGAATGTGATACGCAGTGTACAGGTGT GTCACGTGGTTAATTACAACAAAGAAACAAATGATGCTTATGAAAACAAT TGCAATCTGTTCACTACAGATCGTTTGAAATGTCATTCAAGTGTGAAATG GAGAGATTGTGAAATATTGGAAACAGCTCAAGGGAAATATGAATCTTATG TTTTGGTGTTCAACCCGTAGGTGTTGTCATTTTCTTTGACGCTTTATCAC AATTTAAGTACACATTCGAGATGAAAGAGACTCGTGTGAAACCCGGTATT CGGGCCAGGGAGAGTATTCGTGTGCGGAACCAAAGGGAATGTGAACAACG TTGCCGTGACGACAAAGTGAAGACAGGTGTTTCGCTTACGAATATCGTGG AGCAAAGGGGAGATTTGACCATCAATGCTGGTTGCTCAGAACGCCAGAAA CCTCACGGCTTAGAAGAATAATATCGAACCGAACCATAGAAACCATGCAT GGGTTGAATAATTATCATAATCATTTTCATAAGCAAGAAGTTGATGGTTT TCTTTAGTCAGATCAAAATAAGTGGTGGAGGGAAAGATTATAATTACACA AAGAAAGAATGTGATACGCAGTGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073401-exon-scaffold_91-1575043694:280031..280210 | TCONS_00073401-exon-scaffold_91-1575043694:280031..280210 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1575043694:278814..278990 | TCONS_00073401-exon-scaffold_91-1575043694:278814..278990 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1575043694:278533..278678 | TCONS_00073401-exon-scaffold_91-1575043694:278533..278678 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1575043694:275099..276560 | TCONS_00073401-exon-scaffold_91-1575043694:275099..276560 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1510915933:280031..280210 | TCONS_00073401-exon-scaffold_91-1510915933:280031..280210 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1510915933:278814..278990 | TCONS_00073401-exon-scaffold_91-1510915933:278814..278990 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1510915933:278533..278678 | TCONS_00073401-exon-scaffold_91-1510915933:278533..278678 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1510915933:275099..276560 | TCONS_00073401-exon-scaffold_91-1510915933:275099..276560 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1491911889:280031..280210 | TCONS_00073401-exon-scaffold_91-1491911889:280031..280210 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1491911889:278814..278990 | TCONS_00073401-exon-scaffold_91-1491911889:278814..278990 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1491911889:278533..278678 | TCONS_00073401-exon-scaffold_91-1491911889:278533..278678 | Clytia hemisphaerica | exon |
TCONS_00073401-exon-scaffold_91-1491911889:275099..276560 | TCONS_00073401-exon-scaffold_91-1491911889:275099..276560 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_91 | supercontig | scaffold_91:275099..280210 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
|