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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073391 ID=TCONS_00073391|Name=TCONS_00073391|organism=Clytia hemisphaerica|type=transcript|length=926bp
gcaagattggtcagaaagaagaaaagaaaaacaatttttttgtttatatc
agcataatataacaagaGGCAAACActgccctgatatgaaatatgtgtct
gatatgaaacgggaacacttatgtaaagaTAAACCctttaagttaggctt
tcttctatgcaataaaatttttatccgTAAACAAACAATATCTTAACaaa
tctttttctatttttttggcGTACCCAGTACGTTCTCATCGTTATAAAaa
ttgaccaatcaaaacgtAGTGTNGTGATATGCAACCATTGTCAAATCGGT
GATAATTGTTCATTGACTAATTGCCAAGTCAGTGGTGACCAAAAGGTTCA
AGAAAATTCCGAACTAAAAGGACAAACTATAACAGCCCAGGAGATGGAAT
TTGATGACTCAGATGACGACCAACTAGATATGATGAGTTGAAGGATCAGG
TTTATTTCATCACTAAAAATCAATATGGttattttcttaataaattGTCA
CTACTTTTATATATAAGTTATTAAAAGTGTATGTGGAAACAAAAAAGCAA
ATTATcgttcaaaaaaattaatgaaaatatatatacaTAAAATTAAATCA
AGATTATCGAATCGGTCAAAGTTTTGTTATACCACGAAAATGTCGAATTT
AAATCAATCTTTCAATGGCTCACAATACTAgaagattttagaattttttt
tttcagtcaaagtgttTTTCCAAtgtacatttttggaaaaaccaacAAAA
GTTAAATCTGTTATGAATATATCTTTTGTAAGGCGAAGCCAATTAAATTt
gtacccaaaaaagagggcgaaaaaataaaaaacaagagccgcaaagatgc
ggataaatatttcctttacaaatgttaaaataataattgatgtcctcaaa
agatttcaaagtgctttacaTCTCAG Run BLAST on NCBI transcript from alignment at scaffold_91:271011..273141+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073391 ID=TCONS_00073391|Name=TCONS_00073391|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_91:271011..273141+ (Clytia hemisphaerica)
gcaagattggtcagaaagaagaaaagaaaaacaatttttttgtttatatc
agcataatataacaagaGGCAAACActgccctgatatgaaatatgtgtct
gatatgaaacgggaacacttatgtaaagaTAAACCctttaagttaggctt
tcttctatgcaataaaatttttatccgTAAACAAACAATATCTTAACaaa
tctttttctatttttttggcGTACCCAGTACGTTCTCATCGTTATAAAaa
ttgaccaatcaaaacgtAGTGTNGTGATATGCAACCATTGTCAAATCGGT
GATAATTGTTCATTGACTAATTGCCAAGTCAGTGGTGACCAAAAGGTTCA
AGAAAATTGTAAGTGTGATTTTTCTTTACGTTCACTActaattgggcttt
tccagaaatagtccgtgcccccctgttgaggatatcggatatccaggggg
ttaattatttgttcaaaagtaaatatccagggggttaaatatctacaagg
gagtgAATATCCAGGAGGTAAAGTgtattttcaagtaaaaaatacgatat
ccagtaAGAAATGATATCTCCctggttgagcatatttttaagagtaggat
atccagggggctcgatacttcgaaaaatcaatatcctcaacagtggggtt
CTTCAGCTTGTTTTTCTCCAGGTCGTTAAAAAGGAATATAACGGCTGAAT
CAGATCTTCAGCCGTTAATTTAGGCTTTCGGTTGTTCATTCAGGTCTGCG
TCCGCTGACGAAAAAAGATCTGCGGGGGGGCGGAAGGGGTGGGGGTTNTT
CAGCCGTTAATTTAGGCTTTCGGTTGTTCATTCAGGTCTGCGTCCGCTGA
CGAAAAAAGATCTGCGGGGGAGGGGGGCGGAAGGGGTGGGGGTTGCAAGA
TGATACGACCTCAATAACAAcggtttttttttacaaatgtgATGTATTTT
AAGGGCCGTTACCCTCTTTGGAGACTTTTCTTCCTgatttacaccttttt
ttataagcaaccacaATTTTCGGTTCATGGATTGAGTTGCTAAGGATTTT
CcggatttcagccaaaaaaagttGCTTACggatttttagataaaaatgcT
TTAGCAACTTAAaacattttggcttttttttagCTCATTTTATGTCCCAA
ATACCTCAAATTTGGTATTCGAATACCACTGGTACATATTTTGATACCAA
ATGATACCAAAAATGCCTCTTCTTTAGATATTCTTGGTTGCTTTACCGGT
TCAGTTTCAGGCCAAGCTGCTTAATCTTTTTGGCCATTTCCAAGGCTGGA
CACTAACTAGTAGTAGTAGTAGCTAACTTGGttgcttgaaaattaaaaaa
aaaattgcgtgaatacgtgaattggaaagctttgcgtgaacaaaaattgc
gtgaattgcgaaaaaaattgcgtgaatgcgtgaatttgggaaaaagaTTT
GCGTGATTGCAggaattgaaggtccgctgaGGGGCCCCTAATAGAAAAAA
CTGAGTACTCGATCTCAAAATACACGTACCCCCTTGATTTATCTCCTTCT
TCTTTTCGTTTAGCCGAACTAAAAGGACAAACTATAACAGCCCAGGAGAT
GGAATTTGATGACTCAGATGACGACCAACTAGATATGATGAGTTGAAGGA
TCAGGTTTATTTCATCACTAAAAATCAATATGGttattttcttaataaat
tGTCACTACTTTTATATATAAGTTATTAAAAGTGTATGTGGAAACAAAAA
AGCAAATTATcgttcaaaaaaattaatgaaaatatatatacaTAAAATTA
AATCAAGATTATCGAATCGGTCAAAGTTTTGTTATACCACGAAAATGTCG
AATTTAAATCAATCTTTCAATGGCTCACAATACTAgaagattttagaatt
ttttttttcagtcaaagtgttTTTCCAAtgtacatttttggaaaaaccaa
cAAAAGTTAAATCTGTTATGAATATATCTTTTGTAAGGCGAAGCCAATTA
AATTtgtacccaaaaaagagggcgaaaaaataaaaaacaagagccgcaaa
gatgcggataaatatttcctttacaaatgttaaaataataattgatgtcc
tcaaaagatttcaaagtgctttacaTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073391-exon-scaffold_91-1491911889:271011..271368 | TCONS_00073391-exon-scaffold_91-1491911889:271011..271368 | Clytia hemisphaerica | exon |
| TCONS_00073391-exon-scaffold_91-1510915933:271011..271368 | TCONS_00073391-exon-scaffold_91-1510915933:271011..271368 | Clytia hemisphaerica | exon |
| TCONS_00073391-exon-scaffold_91-1575043694:271011..271368 | TCONS_00073391-exon-scaffold_91-1575043694:271011..271368 | Clytia hemisphaerica | exon |
| TCONS_00073391-exon-scaffold_91-1491911889:272574..273141 | TCONS_00073391-exon-scaffold_91-1491911889:272574..273141 | Clytia hemisphaerica | exon |
| TCONS_00073391-exon-scaffold_91-1510915933:272574..273141 | TCONS_00073391-exon-scaffold_91-1510915933:272574..273141 | Clytia hemisphaerica | exon |
| TCONS_00073391-exon-scaffold_91-1575043694:272574..273141 | TCONS_00073391-exon-scaffold_91-1575043694:272574..273141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:271011..273141 + |
Blast
The following BLAST results are available for this feature:
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