|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073389 ID=TCONS_00073389|Name=TCONS_00073389|organism=Clytia hemisphaerica|type=transcript|length=3835bpRun BLAST on NCBI protein sequence of TCONS_00073389-protein >TCONS_00073389-protein ID=TCONS_00073389-protein|Name=TCONS_00073389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=762bp MMPFNVLLFSCFLESRNIENLEKYNTAQESMIKLVRSTILSYFVLFLVFVRun BLAST on NCBI transcript from alignment at scaffold_91:241000..255359+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073389 ID=TCONS_00073389|Name=TCONS_00073389|organism=Clytia hemisphaerica|type=transcript|length=14360bp|location=Sequence derived from alignment at scaffold_91:241000..255359+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_91:241000..255359+ >TCONS_00073389 ID=TCONS_00073389|Name=TCONS_00073389|organism=Clytia hemisphaerica|type=CDS|length=27468bp|location=Sequence derived from alignment at scaffold_91:241000..255359+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073389 vs. Swiss-Prot (Human)
Match: KDM8 (Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.867e-20 Identity = 62/230 (26.96%), Postives = 104/230 (45.22%), Query Frame = 2
Query: 437 KDFYEKFARKRKPVIFRGVTRKWKSTRYWNNETYLLENYADVVFDVETGKVYDNALNTRKTMDMKEFLTEY-----------KNHTLYLDSPFPHTPMMQDIELPLMMQCEGRHDKFTSMHLLFSNGNTSSPLHHDGYENFLSSFSGVKVVYIIEPKYGKGLYVEFVEDFPGLSPINPQGVDLVKFPLFKDVPFHKVVINPGDMLYIPQYWYHQVRSYKTPNIATAMWFS 1093
+ F E+F +PVI +GV W + W+ E Y+ E VE G Y + ++ M + EF+++Y H L+ P + QDI +P ++ +++ F T SPLH D +NFL G K + + P+ LY S ++ + DL KFP F PF +++PG++L+IP ++H VR+ + + + W+S
Sbjct: 193 QHFREQFLVPGRPVILKGVADHWPCMQKWSLE-YIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIP----ELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDL-SFSVSFWWS 416 The following BLAST results are available for this feature:
BLAST of TCONS_00073389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.