TCONS_00073388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073388
Unique NameTCONS_00073388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073388 ID=TCONS_00073388|Name=TCONS_00073388|organism=Clytia hemisphaerica|type=transcript|length=2752bp
tttagaGTTGAGAAATATAGAGAATTTCGAAAATATAATAGCTAGTACAG
GAATCAATGATTAAACTTGTCCGTTCGACAGCTTTATCTTATTTTGTtgc
aaatggtaggagatacgtTAAATGATGCCCTTTAATGTTTTactattttc
ttgttttttagaGTCGAGAAATATAGAGAATCTCGAAAAATATAATACTG
CACAGGAATCAATGATTAAACTTGTCCGTTCGacaattttatcttatttt
gttttatttttggtaTTTGTTAACTCTCAAAATGAAGACAATTTTGTCAT
CGAGTCCCCTGTTGAAGATGCACTTCGGGTGGAACAGAAAATCAACGAGC
TGCCTACAGGCCACATGAAGCAACTGGGTGAACATGGAAAGGCTATCGAA
GGAGTTATCACAGAGCTAGATTATATGATCGGTGGTAAAGACTTTTACGA
GAAATTCGCACGCAAACGAAAACCTGTCATCTTTCGTGGTGTAACTCGTA
AATGGAAATCAACTCGATACTGGAATAACGAAACCTATTTATTAGAAAAT
TACGCGGATGTTGTTTTCGATGTTGAAACAGGGAAAGTTTACGATAACGC
TTTAAATACTCGTAAAACGATGGATATGAAGGAATTCTTAACAGAGTATA
AGAACCACACCCTGTACTTAGATTCCCCTTTCCCACACACTCCAATGATG
CAAGACATTGAACTACCCCTTATGATGCAATGCGAAGGTAGACATGACAA
ATTCACAAGCATGCATTTGTTATTCTCAAACGGTAACACCAGCTCCCCAC
TACATCATGATGGTTATGAGAACTTTTTATCTTCGTTTTCTGGTGTCAAG
GTGGTATATATTATCGAACCAAAGTATGGTAAAGGACTTTATGTTGAATT
TGTGGAAGACTTTCCTGGATTGTCTCCTATAAATCCTCAAGGTGTCGATT
TGGTCAAGTTCCCACTTTTCAAGGATGTCCCCTTTCATAAGGTGGTGATC
AATCCTGGTGATATGCTGTACATCCCACAATACTGGTACCATCAAGTTCG
TTCATATAAAACACCTAACATCGCAACTGCCATGTGGTTCTCTCTTTTCA
CCATACCCGATGCTGAAGAGTTCGGATACCGTGACGTTTTAAACATTGCC
GACAAATTTGCAGTAGGCGTTGAAAATTCACCACCAACACTGGACTGTCT
ACACCAGAATCGTCCCTTGAAACAAATCAACAAAGAAACTGATTTAAGAG
AATTTCCAGAGGCACCCGTAAATGACCAAGAGCAGGAGATAAACGGCGTG
ACGCTGAGAGAAGAAGTAGGCGACGGGCAACCAACCATCTTTGCTGGTTC
TGACGATACTTTCATCTATGCTGTGGATATGCTTACTGGTGATCTCAAAT
GGAAAGTCAAAACCAAAAAGGATACAGGATCAACATGTCTTTTCAACCAA
GATAACACGCTTGTTTATTGTGGTGCTGATGACGGTTACCTGCGTGCAAT
GTTTATCCAGAACGGAACAGTGTACTGGCAATATCAAACATCAGGAGCTA
TCATCTCATCAGTGAAGATGGACGACgatggtaatttatactttggCTGT
CTCGATCACTACATGTACTCCATCAACAAgaaaggtgaaaaaagATGGCG
CAGGTTTCTGGGCAACCAAGTCTGGACTACACCGTTGTTGATACCTGAAA
TAGATCTTCTCCTAGTTGGAACAAAAGTTGAATCGGCGAATGACACGCGT
GCGAACGCGTTCGCTTTGGAAATGACGTCGGGTAATTTTGTATGGCGTTT
TAAGACAGATGGTGGATTAGTTGCGTCACCTCGATTGAGTCCAGTTGATG
CTACTGTCTTCCTTTGCAGCACTCAAGGTACAATGTATGAGCTTGACCTT
CTTGAAGGGAAGCCATCATGGACCACCTCTCTACAAACTTCAGCTGATGA
AGTGTTTTGGTCTACACCGACATTCAGTGCTGAAGGCTTGGTATTTGTAC
TCACTGGTGGTGGAAGACTTGTTGCCATAGATACGTCAACCAAAGAAACA
AAATGGTCGTTGGACCTTCATCGGAGTAAACTAAAAGACGATACAAAGGA
AGACGACAGAGGGAGTAATTCAAGTCCATATTATTCAGAAGTTGATAACA
TATTATACGTGGGAGCTGGATTTGGTGTTGTTTTCGCTATTAACCCTGAT
AATGGAGAAATTGAATGGCAACAACGTGTTGGCACCGGCATTTTCTTCAG
CTCGCCCCGGTTATCTAAAGATGGTATCCTGTTCATTGGCACAACTGATG
GCTTTTTGGTTGCCATGGatacaaaacaaaatggtagcatTTTATGGAAA
CTGGAAACTGGAGGCCCATTTGTGGGTACAGCTTTGATAACCAAGGGGTT
TGAGTCctagaaaattgtttgtttttgatAAATCCCTTTATGTAAGTATG
CTCAGCTCGttttaaaataagattttaaaatgCTTTGTTTAATCCACATc
tgctacatgttttttataagcatatctaggatCAGATATGGCAAAAATGA
GCCTACATTTTCCGATTTCTGCTATTTTTGCTgggattttacggattttc
gaaatttcactaaaatttcaCTTAGGATAAAAGCAATCTTTCAAGCATTT
TTTAGCCTTGTCAATCTCTCtgcctaagcatctctgagcaaGTCAATTTt
ggtatgcttataaagaaaaaacatgtatcttaCAGCGTTTTCGATCTTGT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_91:241000..254176+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073388 ID=TCONS_00073388|Name=TCONS_00073388|organism=Clytia hemisphaerica|type=transcript|length=13177bp|location=Sequence derived from alignment at scaffold_91:241000..254176+ (Clytia hemisphaerica)
tttagaGTTGAGAAATATAGAGAATTTCGAAAATATAATAGCTAGTACAG
GAATCAATGATTAAACTTGTCCGTTCGACAGCTTTATCTTATTTTGTtgc
aaatggtaggagatacgtTAAATGATGCCCTTTAATGTTTTactattttc
ttgttttttagaGTCGAGAAATATAGAGAATCTCGAAAAATATAATACTG
CACAGGAATCAATGATTAAACTTGTCCGTTCGacaattttatcttatttt
gttttatttttggtaTTTGTTAACTCTCAAAATGAAGACAATTTTGTCAT
CGAGTCCCCTGTTGAAGATGCACTTCGGGTGGAACAGAAAATCAACGAGC
TGCCTACAGGCCACATGAAGCAACTGGGTGAACATGGAAAGGCTATCGAA
GGAGTTATCACAGAGCTAGATTATATGATCGGTGGTAAAGACTTTTACGA
GAAATTCGCACGCAAACGAAAACCTGTCATCTTTCGTGGTGTAACTCGTA
AATGGAAATCAACTCGATACTGGAATAACGAAACCTATTTATTAGAAAAT
TACGCGGATGTTGTTTTCGATGTTGAAACAGGGAAAGTTTACGATAACGC
TTTAAATACTCGTAAAACGATGGATATGAAGGAATTCTTAACAGAGTATA
AGAACCACACCCTGTACTTAGATTCCCCTTTCCCACACACTCCAATGATG
CAAGACATTGAACTACCCCTTATGATGCAATGCGAAGGTAGACATGACAA
ATTCACAAGCATGCATTTGTTATTCTCAAACGGTAACACCAGCTCCCCAC
TACATCATGATGGTTATGAGAACTTTTTATCTTCGTTTTCTGGTGTCAAG
GTGGTATATATTATCGAACCAAAGTATGGTAAAGGACTTTATGTTGAATT
TGTGGAAGACTTTCCTGGATTGTCTCCTATAAATCCTCAAGGTGTCGATT
TGGTCAAGTTCCCACTTTTCAAGGATGTCCCCTTTCATAAGGTATAATTA
ATCTTTATCGTTTTTTATAATAAGATTATTAGTTTGTTCAAGCGTCGGTA
AcgtgaaggtagagcatccagctacggtgcgcaagatCGTAGGTTCGAAC
CTCAGCTGATGGTCTTACAAAACATTCCAAAACGGTACTTGAAGCTTGCT
TGATGCTTAGGAATCAAGAGAAGGACTATTAAAGTAATCCAGGGTAAGAG
TGGCGTCTTCCCCTACCTTCAGGGCGACAACTTTAGATAAGGGAGTCTTC
AGGTCGCCCTCAACTGGGATCACAAACTTACGTTAGTACTAGTAAAAGTC
AGGTTTGAACCATGGAGAACGTTCCTTAGACTTCTGTATTATACATTTTG
AATGTGTACTCTTAGGATCCAAATAtaagggggaggggggttgAATAAAC
AGAggtgttggaaaattttcgaaattttaataaacgagggggtcctaata
aggtccagggggtcggaaaatttttgaaaacttaacaagcgggggggggg
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNggggggggggggggtgtttatttggaacctaagag
tacttttTTCTTCGTTTTGATGTTTATTCTTTTCATTTGGTACAGGTGGT
GATCAATCCTGGTGATATGCTGTACATCCCACAATACTGGTACCATCAAG
TTCGTTCATATAAAACACCTAACATCGCAACTGCCATGTGGTTCTCTCTT
TTCACCATACCCGATGCTGTAAGTCTGTCTGTTTGTCTGTCTGTATGCCT
GTCTATCTTGTTTGAGAGAGAGAAAGAGTTATTCTTCCTAAGCAAAAGAA
ACTGGCCTACAATCAcgatcgaaatatattgagattttagtgtattttaa
cgtttttcagttCTGGCGAGAATTGCTCTTTTAGTACTtgtttcattgaa
tatttcgattttggagatGTTCGATGGCCCAAGCCTTATTGCAActattt
tgagcttttaaatccggAGATTCTAAGGTTTtataagtctcatgttaaaa
ctcagatttaaaactctactttccaactgtagcttaacgcgcttaaaaat
catttgaggtatttaaaatttcgcagggaaatcTCCTCTgtatcaaatat
tttgtccatcacTGTATAAGGTTTAtgggaagaaaatttttgctgagttg
GCTAAAATCCTTCTTTAGGCTCCAATGAAGATCATTGTGAGACCCACCAT
TTGCTGGTCCGCTGCCAATTAGACATTTGGTGATGGCGACATCAATTTTC
TGATCATcatcaatttgaatttttctatgaGCTCGTAAATGTTAAGGAGT
TTCGCTCGCTTAAGGAGCGATGACCAAGTGGTCAAATGAGTCAACATCTC
AAATCACGAATCCCCACGCCATCCAACTCCGTTCAATAACATACCGTAGT
TACTGTTTGTCCGAGTTTTAATCCCATCTTCCTTTGCATTGATTTCTTTT
GCAAGTCAATTAAACTTATTGAtgacaatacaaaagtaataGCTTGCACG
CATTactacgaatcaagatgaaaaggattgtgggattgtgggtcaaatgt
taaaagaaataattatgacgtttgcatagcggTGTGCGATTCTTAGAAAA
CTAGCCATCTGATCGTGGATCCTATGAAAACAACCGAAATACTGCCTAAA
ATTCctagattgggcttttccagaaaaaaccccccggacaacccagatta
ccccggacagagcaaattttgatgattttttgctaccccacggacaatat
atcctccacatgtacggacattttcttgAAGAGCCCATTTCTGAGTTATC
TTACGTGAAATATCTTACCTTTGAATACCAAGCTTACAATATTTTTCAGG
AAGAGTTCGGATACCGTGACGTTTTAAACATTGCCGACAAATTTGCAGTA
GGCGTTGAAAATTCACCACCAACACTGGACTGTCTACACCAGAATCGTCC
CTTGAAACAAATCAACAAAGAAACTGATTTAAGAGAATTTCCAGAGGCAC
CCGTAAATGACCAAGGTATTATATACAATAGAGTCTTtaacttgaacctc
tataattcgaatgacTCCTTTATCTCGAACAAGTTTTTTAGTTCCTTCAG
TTAATAATCCcctataaaccttactccataactcgaaattcccTTAACTC
AACtcaactcaaacaaatttgtgttcctggTTGAAACTAGTTATTAAGAC
TCTACTGTACTGCCGAAAGATGTTTGAGATTTTTAGCATCCGCTGACGTA
GCTCTTCATCCGTTGACGGAAAAAAAGTCCACGGCGACGAAAACCCGTTC
GCTTTTGGCGATGGCTCCAGCGACGGACTTGGTCGTCAAGACTGTCTTCT
GTTCTCGTTTTGATTGGCTTTGCTCGAGAAATTAATTATTCTTTACGTAT
tgtcttttgggaattctctatatgacgtcaaaaagacaaagaatgTTTCT
AAATGTTTGATAAATGAGACAAAAACTTTATAATTGTATTTTagtatttt
aaaagttatcttccatTAAAAAGCTAAAAAGTGCACACTCAGAGTCCCGT
GCTTACGCACTAATCATATGTACAgtattgattgaaaaaattgaaattcg
acgtaaaaactttttaattgtATTTTACAGAGCAGGAGATAAACGGCGTG
ACGCTGAGAGAAGAAGTAGGCGACGGGCAACCAACCATCTTTGCTGGTTC
TGACGATACTTTCATCTATGCTGTGGATATGCTTACTGGTGATCTCAAAT
GGAAAGTCAAAACCAAAAAGGATACAGGGTGATTTTCTTAGCCCTTTGTG
cacgctgtttttttttttgaaaaagttgaaatttttctaatttttttttt
ggaacatAAAACTTTGAAGTGCCATAAAAACTTGTAGCTTAtgatttaga
agatggttttggtaccattagaAAGCTATTTGtatactctttctaaaagc
attcggtttatgcccctttaaatcaagtggtcagtcAGACATAGTTTCAG
CCCCCTACATtttgggttttgatgaaccaaaagctaggggggtgttaaaa
gtatgactttcctaagggggggttgccagttaaggggggtcttcttacct
aaggttgggtcttcttagataaggggatcttccttgaattatgaCTCTAT
GAATTATGAATCGttccatttatactgattttctaaggggggtgtgaaat
ttgaaatgaatttcctAACGGGGGTAAGCACTTAAGggggggttagcact
taaggagggtcttcttacctaaggggggagggggtcttgacccctctaga
aactatgccTCAGGAGCTATGGCTTCAAGTTTGAAACTcagtattttggc
ttgttttggatGCATATGCGCTTCCCTCGTGGTCTAAGGGTTGAATGGAT
TCTATTACGCCTGGACTATTAATTATCGCGATGTTTGCGAAATTTAGCTT
GCGaaacatttgaaatttaaatattGGGTAAAACTCCTCATCACGTCTAA
TTTTCAGTGAAAGATAGAGTGATTTTTTGGAATCTTGTCTACGCGAAGAA
TTAAAAAAGTTGTCAATCTGCGAAAGCACGCGAATTGAATacaagaagaa
cttaaaatcttaaatattttcattttgaagaattggtgtaaaaaagtgaa
acatggaaaagtttcattttttattggtttaatcaaaataggggatttgg
aaaactttctatgtttgtttttttgtaactatgggcgagcaccccgttGT
TAAGAAAGATGTTGGCGAAAATCAATCCACTCCACTCAAGTGAAATTCCT
AATCAATAGAGTGCGAATGACTGATGTTTTAGTCTCACAATCTACTCCTT
CGAGAAAAAAACTCGAAACATTAGTGTATTTCTATTAGCATTTAATCTAG
ACGTGTACAAAGTTCTTCCGGCTTTCACGTCtccaaattcaataaaattt
gtaTCAAACTTGAGAATAATTTTGCTTTaattcacattttttttataaga
acatctaaaatttttgaggccttcggatgttcttaacttatgagttttaa
gcctaaaaatgttttcaacatgttcttattttgaccattctgtaaatatt
tttgaccgttttctaagaaatagggtgttttcgagtccacaaagccttta
aatgttcttaatttaatATTATGGCCAGCCTTATGTTCtgatatagttta
ttcttataaaaaacgtgtttgtCTTAAAGTCCATTAGCCTTGACCACTGA
TTGAAGTATAAAACCAGGAACATCTTTTTTGTAGATCAACATGTCTTTTC
AACCAAGATAACACGCTTGTTTATTGTGGTGCTGATGACGGTTACCTGCG
TGCAATGTTTATCCAGAACGGAACAGTGTACTGGCAATATCAAACATCAG
GTAATTATCAGGTCACTGCGCAATCACTAGAATATCTCGGTTTATATTTT
CCCTTGAGGCtttttctcaatcccggccaaccaAAATCTTGGTATTTCAA
AGCGGCACCCTATTGGTACCACTACTCGATGTAGGTTCAAATACACTGAA
aacgctagatctacttttctataaatatttttaatgtcGCGCTGATGGTG
TCGTGCATTGTTGTAAGTGCTTCATTTACTTTTTTGCGTGTCCATATAAC
ATCATTTTCCTAATAAACTCTGGTACAGCTGGTATAGTATACGTAGTCTA
GGGCAATGTTTATAAGGGTCACTGATTTGCTTCTGTAATGTACATCATTT
TAATCAACTGGTTGGTTTAACTTATTTAACAGCAACATTTTTTGACATAA
CTTCTTcagaattgattttttttgaaaattccatttttcTATCTAAAGTA
CAGTATAACCGTgtttcagaatttttgaaaatctagtCATTGATTACGAA
ATTGACCCTGTTTTACTTTTAAAGTAAACTATTAAGAGGAAATAAAGTCA
CATTTTTATCAGTGAATGTCAGCGCCGTCCTGTTCAAGactattttttct
ttctctgtTCCTCAGGAGCTATCATCTCATCAGTGAAGATGGACGACgat
ggtaatttatactttggCTGTCTCGATCACTACATGTACTCCATCAACAA
gaaaggtgaaaaaaggtaAAGTGACTCTAGTGCGTCTCCTTTTTCAGGAA
TCAattcaattgttttttctttcccttATCATAGCTTTCTAGACTCTAAA
CttctaaaaaaattttataGATGGCGCAGGTTTCTGGGCAACCAAGTCTG
GACTACACCGTTGTTGATACCTGAAATAGATCTTCTCCTAGTTGGAACAA
AAGTTGAATCGGCGAATGACACGCGTGCGAACGCGTTCGCTTTGGAAATG
ACGTCGGGTAATTTTGTATGGCGTTTTAAGACAGATGGTGGATTAGTTGC
GTCACCTCGATTGAGTCCAGTTGATGCTACTGTCTTCCTTTGCAGCACTC
AAGGTGTGTATAATTCAAAGATATCATATTCCTTTTAACACTAGATAGAC
TAAATGCTCACAGATTTCCCTTAGAAGCGTGTCCAGTTTTGAAGTCGACT
AGTCCGCCATGTGGTAGTCTAGAGCTAGACTACTAATTAACATCAGTNAG
ACGGATGGTGGATTAATTGCTTCACCTCGATTGAGTCCAGTTGATGCTAC
TGTCTACCTTTGCAGCACTCAAGGTGGGTATGATCCAAAGATATAATATT
CCTTTTAACACTAGATAGACTAAATGCTCACAGATTTCCCTTAGAAGCGT
GTCAAGTTTTGAAGTCGACTAGTCCGCCATGACTAGTCTAGAGCTAGACT
ACTAATTAACATCAGCTTTCCTCAAAAACTTCTTTTACAGTGGTAGAAAA
AACCTACCTagaagtttgtttacttttcgagTGTTTGAATTAGTATCACT
ATTCCAACTTCCCGTAcggctttttttcttctttttgactttgagGCATG
ATTGCTCCTACGTTTAATAAAGAATAGTGGTCTGGAAATCGAGACTAGCC
ATGTTGCTTTATAATTTTTAATAGATTGAAAACGCTGTTAACAATCTGTG
CTTATTTACAATCTTTTTACTCACAGCCAGATTGCATTAAATTAGATTAA
ATAGCTTTAACTCTAGCTAAATTTCGTTCGATAATAAGTTAAAAAGCTTA
AGCTTTAAGGAAGTGATAGTTATCGCACTGTACCGAGTTCTGAAGAGGCG
CCTAAAGCTGCTTCTaaaggccggtttccacttgcgcgcgctttgatcgc
actttttcgagcaaagctacCAGGCTATTAGCCTATCTCTATTCCAACAC
GCGATTTTTAGaacggtgtcgaggaaaaagccgtggtcgtctggtacagg
caaccaggctattggtcaaaagaaaaatgaagcaattccattggcgcgat
ctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttttcgag
cacgcgctacatttttatgacgtaatctttttttccaagcaaaaaggatt
gaagctaaAAGGTGCGATCACAGtgtgcgcaagtggagaccggctgTAAT
TGCAATTTTCGGTGCCTCGTTGATTTTTTAGCCATTAAATTAGcagtttt
caatcaaaaaaatcttgcCTTCTGATAAAGGGCGCGCGGCAAAATACTAT
CTAACGAGAATCACCATACGATTTTGCATGAATTTTGCTCGAGAAACCTG
ATTTCTGAGACCATGTTCGGACGTTACGGATCTGTTctgttccgttccga
aacggttccgaaacaagtgtgaacgtcaaaaagaagacgttacaaagcaa
agcAGAtagaaacggtttcgctccactttttttcatcggaacggaactgc
tccgttttcttgctccgaaacgttccaaaACAAATATGAACACGCTCGAT
CCATAACGAAAATCACACTAGaacgaaacggaacagtaacgtgtgaacat
ggtctgagTATAAAAATGTACAAAGTACCCTTTAGGTTGGACGCGATCAG
gtattttttatgtttgaagTGTGTAATACAGAAAATGTTGCTTCTTCTtg
tttagccaatcagattgtgGCTATTTTTTGGGCTTAAGATTAAACGAGag
taccttattacacgaatattacttgacaagtattcaacggccttgaaatt
aacacacCAAAAATTAATACGAATttgatttgctttttcaaggacaccac
ggctggtttttaTAAGGGgatttttattaacacgaaatttttttaataaa
attcgtaataaaatgactagtaatatttgtgtaataaggtatataGTAGG
GGCCAAGCCTGAgattccgtgacatcttttttacgacctagccattttta
gtctattccaaagaacagtatactACAAGATATTCTTGaaagggaggacg
cggattaggcccgggaaaactttttatgactgcaagggaaaataaggagt
agagaaatagcttattttcaaaagtcaaaataaacaaaaatgattggtac
catctgatagagcatgaaattcggAAAATTCggaaaataatgataaaaac
tatattttttaatgttcacAGGTACAATGTATGAGCTTGACCTTCTTGAA
GGGAAGCCATCATGGACCACCTCTCTACAAACTTCAGCTGATGAAGTGTT
TTGGTCTACACCGACATTCAGTGCTGAAGGCTTGGTATTTGTACTCACTG
GTGGTGGAAGACTTGTTGCCATAGATACGTCAACCAAAGAAACAAAATGG
TCGTTGGACCTTCATCGGAGTGAGAAACTTGTTTACTATTTAAAAGTGTC
TTTGCGTACAATTATCTGAACTTTTTAAGAGGCAAAGCCAAACTGTTCTT
TTTCTCCtgttaaaacttgaaaaaacgtAGTAATAGACGGCAGTAATCAC
AGATATCGTATATAAAACAAAGCAatagatagagctactccgcCTCTtgc
ttaggcaaaattgggcttttccagaaatagtccgtgcccctgttgaggat
atcggatatccaggaggTTAAATatctaccttattggaactaattttcgc
gggaactaattttcgcggtcgaaaaaaaatatccaaaaaattgcatttcg
ccgGTTTtatttttcgcggttttttccattctggaattttggcgggtttt
aattttcgcggttttgcccttttttggacaaatttctttcattttcctag
ggatttttcaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactctcaaaattttt
cgcgggatcaaattttcgcgattttgacgaaaaaccgcgaaaaacgctaa
aattaaaacccgcgaaaattagttccaataaggtacaagggagcggatat
ccagggggtaaagtgtcttttcaaataaaaaatacgatatccaggggtaa
gcatctttataagagaggatattcAGGGgattgagcatatttttaagagt
ggatatccaggggtctttactaacaaagtaggatatccaggggatttcga
tacttcgaaaaatcaatatcctcaacagtgggagtaaaaatcttttctgg
aaaagcccatgtGCCATCTTCACTGAGAAGACCACCGTTCTGTGCCGATA
ATTTGATCCATCCAGATCAATCATGACCATTCTCTCGCTTCCCGCCATGT
CAGTTGTtttgttttaattgaaaaaaatgccgGTACCAAATTCTAGTCTA
CTACTGTAGACTACTCGTAGATTtataaaagcccgaagggctagatagag
tgcttttgctgaaaagtgtgccgagattagataggaaatcctacctaagt
cacgtgaaattacaatagaatttcagcgcttgaccaatcagaagcttcgc
aggtttgcgaaaacaatagcagcaataatTCTTCCGATAGCCCGACatgc
ccttcgggcttataaatCTATGAGGCTACTCAACAAAGATTGATTGTTTT
AGTGTTTTAGTAATTTGTTTACTCAAAgtattcaaaaatgttttcttctg
cTGCTTTTTAGGTAAACTAAAAGACGATACAAAGGAAGGTATAATGCGAT
ATTTATTTTCTCAATATCTTGATGCTTCTCCGAATTCCAGCGAGCATCTC
GACTCTTCTCTATCTTAGGGCAATTTTCGACTATTTAggctctttcaaaa
aaaaactcatgTATAGGGGGGTTGAATAATatccatttttttttcaatga
tctTTGCACGTGTTTTACCGCTGGAAAGCATCAAATTGGATAGGATACCC
ATAATTATAGGATGGTGAAAATTAGACCTGGACATGCACATGaagttttt
cacaattttttcacaaattttggaATACCCATGGTATATCCTCCACACAc
cggtgaatttttttctggaagagccctttccagaaaaaatcacCTTTCAT
GTTGACCAGCAGAATGTCATTtcatttatcattcaaactgtcctttgatt
tttaaggttttgtttttgaataagagggatatcgtttgcttactcatcaa
ttttgattcacaagctttttaacataggattgacacggatgtggagcaag
attggtcagaaagaggaaaagaaaaacatttttttgcttacatcAGCATA
ATGtaacaaaaggcagacactgtcctgatatgaaacatttgtctgatata
aaacggaaacacttatgtaaaaagaaaacctttaaggaCTGAAACTCTCC
TAATCCCTTAACTTTTGGCCAATTGCTATTATTAAGTAAGAAATGTTGCC
AAACAAATATTTGGCAAATATGTTCACTTTCATGTGAATAATGGTTTTCT
TTACAAACACTCAAttttcattgttgttttttatataatacatgtttttt
attatgagaacaaactgtataagaacatggcttccatggccaaaatatta
agatcGAGTTAAggagttaagaacattttaaggcctcgcggactttaaaa
cacccaatttcttaggaaattgcacaaaaatgcccacaaaatggtgaaaa
taagaaggttttatttttacataagggTTGCTGTATCATATCAAGACaat
gtctgcctattgttatattgtgctgatatttttttttcctttctgaGATC
TGACCAATCTtactccacatccgtgtcaattcaatataaaaaagcttgta
aattaagattgacgagtaagcaaacgatatcactcttatttaaaaacaaa
acctttaaaaagctCAAAACCTTAAGAACATATACGAAGGcttgaaagat
tttgaatgttcttaaaaaaaacacatattATAATGTGTTATATATTTTAT
GATATCTTTCAGACGACAGAGGGAGTAATTCAAGTCCATATTATTCAGAA
GTTGATAACATATTATACGTGGGAGCTGGATTTGGTGTTGTTTTCGCTAT
TAACCCTGATAATGGAGGTATTTATTTCTACCATTTTACATTTCTTTGAG
ATGGAGGATGAATCAATCTTCCATAAGATTCTCGGTGGAAAGTATCCTCA
GTCAGTGTTACTTTCATAATTGTGGGGTAACTTTCATAAGCCTTCAGATT
GCAATTTTTTCTGTTCCTTGATTTATCTGCAAGTCAGAAACATAATATCT
TTGCATTCAAACTTGCAAACTTGCAAACCAAAAGANAACATAATATCTTT
GCATTCAAACTTGCAAACCAGAAGAGTTTACTGTTTGGAGGCTATGTAGG
TTACCCCTCCTTTATGAAAGTAACCCAAATTTCGGTAATCGGAGAATAAT
CTTTAAAGAGCCACTTTTTCACACTAGCAATTTTTCTCACACTAGCAACT
TTTCTCACACTAGCAACTTTTCTCACACTAGCAACTTTTCTCGCACTAGT
AACTTTTCTCACACCAGCATTTAAAGTGTTGTCTCTCTTtttccaacttt
caacaatTTTCTCTCGGTTTTTTCTTCTCAAGAAATTGAATGGCAACAAC
GTGTTGGCACCGGCATTTTCTTCAGCTCGCCCCGGTTATCTAAAGATGGT
ATCCTGTTCATTGGCACAACTGATGGCTTTTTGGTTGCCATGGatacaaa
acaaaatggtagcatTTTATGGAAACTGGAAACTGGAGGCCCATTTGTGG
GTACAGCTTTGATAACCAAGGGGTTTGAGTCctagaaaattgtttgtttt
tgatAAATCCCTTTATGTAAGTATGCTCAGCTCGttttaaaataagattt
taaaatgCTTTGTTTAATCCACATctgctacatgttttttataagcatat
ctaggatCAGATATGGCAAAAATGAGCCTACATTTTCCGATTTCTGCTAT
TTTTGCTgggattttacggattttcgaaatttcactaaaatttcaCTTAG
GATAAAAGCAATCTTTCAAGCATTTTTTAGCCTTGTCAATCTCTCtgcct
aagcatctctgagcaaGTCAATTTtggtatgcttataaagaaaaaacatg
tatcttaCAGCGTTTTCGATCTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045541XLOC_045541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073388-exon-scaffold_91-1491911889:241000..241990TCONS_00073388-exon-scaffold_91-1491911889:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:241000..241990TCONS_00073388-exon-scaffold_91-1510915933:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:241000..241990TCONS_00073388-exon-scaffold_91-1575043694:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:242895..243017TCONS_00073388-exon-scaffold_91-1491911889:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:242895..243017TCONS_00073388-exon-scaffold_91-1510915933:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:242895..243017TCONS_00073388-exon-scaffold_91-1575043694:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:244149..244314TCONS_00073388-exon-scaffold_91-1491911889:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:244149..244314TCONS_00073388-exon-scaffold_91-1510915933:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:244149..244314TCONS_00073388-exon-scaffold_91-1575043694:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:244930..245077TCONS_00073388-exon-scaffold_91-1491911889:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:244930..245077TCONS_00073388-exon-scaffold_91-1510915933:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:244930..245077TCONS_00073388-exon-scaffold_91-1575043694:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:246584..246699TCONS_00073388-exon-scaffold_91-1491911889:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:246584..246699TCONS_00073388-exon-scaffold_91-1510915933:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:246584..246699TCONS_00073388-exon-scaffold_91-1575043694:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:247315..247414TCONS_00073388-exon-scaffold_91-1491911889:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:247315..247414TCONS_00073388-exon-scaffold_91-1510915933:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:247315..247414TCONS_00073388-exon-scaffold_91-1575043694:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:247520..247752TCONS_00073388-exon-scaffold_91-1491911889:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:247520..247752TCONS_00073388-exon-scaffold_91-1510915933:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:247520..247752TCONS_00073388-exon-scaffold_91-1575043694:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:249871..250068TCONS_00073388-exon-scaffold_91-1491911889:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:249871..250068TCONS_00073388-exon-scaffold_91-1510915933:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:249871..250068TCONS_00073388-exon-scaffold_91-1575043694:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:251711..251737TCONS_00073388-exon-scaffold_91-1491911889:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:251711..251737TCONS_00073388-exon-scaffold_91-1510915933:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:251711..251737TCONS_00073388-exon-scaffold_91-1575043694:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:253012..253116TCONS_00073388-exon-scaffold_91-1491911889:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:253012..253116TCONS_00073388-exon-scaffold_91-1510915933:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:253012..253116TCONS_00073388-exon-scaffold_91-1575043694:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:253632..254176TCONS_00073388-exon-scaffold_91-1491911889:253632..254176Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:253632..254176TCONS_00073388-exon-scaffold_91-1510915933:253632..254176Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:253632..254176TCONS_00073388-exon-scaffold_91-1575043694:253632..254176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:241000..254176 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61422	3.30774	1.52826	0.496675	27.7919	20.753	20.3323	21.5239	12.0686	16.4545	10.3676	9.77946	9.89538	11.1725	9.04898	10.1392	9.64738	12.3564	11.4533	16.6349	6.20639	6.52939	6.32351	8.15379	12.7765	12.4515	5.3556	3.93883	4.97595	4.8154
Blast
[Close]
BLAST of TCONS_00073388 vs. Swiss-Prot (Human)
Match: KDM8 (Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.813e-20
Identity = 62/230 (26.96%), Postives = 104/230 (45.22%), Query Frame = 2 
Query:  437 KDFYEKFARKRKPVIFRGVTRKWKSTRYWNNETYLLENYADVVFDVETGKVYDNALNTRKTMDMKEFLTEY-----------KNHTLYLDSPFPHTPMMQDIELPLMMQCEGRHDKFTSMHLLFSNGNTSSPLHHDGYENFLSSFSGVKVVYIIEPKYGKGLYVEFVEDFPGLSPINPQGVDLVKFPLFKDVPFHKVVINPGDMLYIPQYWYHQVRSYKTPNIATAMWFS 1093
            + F E+F    +PVI +GV   W   + W+ E Y+ E        VE G  Y +   ++  M + EF+++Y             H L+   P     + QDI +P         ++  +++  F    T SPLH D  +NFL    G K + +  P+    LY          S ++ +  DL KFP F   PF   +++PG++L+IP  ++H VR+    + + + W+S
Sbjct:  193 QHFREQFLVPGRPVILKGVADHWPCMQKWSLE-YIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIP----ELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDL-SFSVSFWWS 416
The following BLAST results are available for this feature:
BLAST of TCONS_00073388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KDM81.813e-2026.96Lysine-specific demethylase 8 OS=Homo sapiens GN=K... [more]
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