Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073388
Unique NameTCONS_00073388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073388 ID=TCONS_00073388|Name=TCONS_00073388|organism=Clytia hemisphaerica|type=transcript|length=2752bp
tttagaGTTGAGAAATATAGAGAATTTCGAAAATATAATAGCTAGTACAG
GAATCAATGATTAAACTTGTCCGTTCGACAGCTTTATCTTATTTTGTtgc
aaatggtaggagatacgtTAAATGATGCCCTTTAATGTTTTactattttc
ttgttttttagaGTCGAGAAATATAGAGAATCTCGAAAAATATAATACTG
CACAGGAATCAATGATTAAACTTGTCCGTTCGacaattttatcttatttt
gttttatttttggtaTTTGTTAACTCTCAAAATGAAGACAATTTTGTCAT
CGAGTCCCCTGTTGAAGATGCACTTCGGGTGGAACAGAAAATCAACGAGC
TGCCTACAGGCCACATGAAGCAACTGGGTGAACATGGAAAGGCTATCGAA
GGAGTTATCACAGAGCTAGATTATATGATCGGTGGTAAAGACTTTTACGA
GAAATTCGCACGCAAACGAAAACCTGTCATCTTTCGTGGTGTAACTCGTA
AATGGAAATCAACTCGATACTGGAATAACGAAACCTATTTATTAGAAAAT
TACGCGGATGTTGTTTTCGATGTTGAAACAGGGAAAGTTTACGATAACGC
TTTAAATACTCGTAAAACGATGGATATGAAGGAATTCTTAACAGAGTATA
AGAACCACACCCTGTACTTAGATTCCCCTTTCCCACACACTCCAATGATG
CAAGACATTGAACTACCCCTTATGATGCAATGCGAAGGTAGACATGACAA
ATTCACAAGCATGCATTTGTTATTCTCAAACGGTAACACCAGCTCCCCAC
TACATCATGATGGTTATGAGAACTTTTTATCTTCGTTTTCTGGTGTCAAG
GTGGTATATATTATCGAACCAAAGTATGGTAAAGGACTTTATGTTGAATT
TGTGGAAGACTTTCCTGGATTGTCTCCTATAAATCCTCAAGGTGTCGATT
TGGTCAAGTTCCCACTTTTCAAGGATGTCCCCTTTCATAAGGTGGTGATC
AATCCTGGTGATATGCTGTACATCCCACAATACTGGTACCATCAAGTTCG
TTCATATAAAACACCTAACATCGCAACTGCCATGTGGTTCTCTCTTTTCA
CCATACCCGATGCTGAAGAGTTCGGATACCGTGACGTTTTAAACATTGCC
GACAAATTTGCAGTAGGCGTTGAAAATTCACCACCAACACTGGACTGTCT
ACACCAGAATCGTCCCTTGAAACAAATCAACAAAGAAACTGATTTAAGAG
AATTTCCAGAGGCACCCGTAAATGACCAAGAGCAGGAGATAAACGGCGTG
ACGCTGAGAGAAGAAGTAGGCGACGGGCAACCAACCATCTTTGCTGGTTC
TGACGATACTTTCATCTATGCTGTGGATATGCTTACTGGTGATCTCAAAT
GGAAAGTCAAAACCAAAAAGGATACAGGATCAACATGTCTTTTCAACCAA
GATAACACGCTTGTTTATTGTGGTGCTGATGACGGTTACCTGCGTGCAAT
GTTTATCCAGAACGGAACAGTGTACTGGCAATATCAAACATCAGGAGCTA
TCATCTCATCAGTGAAGATGGACGACgatggtaatttatactttggCTGT
CTCGATCACTACATGTACTCCATCAACAAgaaaggtgaaaaaagATGGCG
CAGGTTTCTGGGCAACCAAGTCTGGACTACACCGTTGTTGATACCTGAAA
TAGATCTTCTCCTAGTTGGAACAAAAGTTGAATCGGCGAATGACACGCGT
GCGAACGCGTTCGCTTTGGAAATGACGTCGGGTAATTTTGTATGGCGTTT
TAAGACAGATGGTGGATTAGTTGCGTCACCTCGATTGAGTCCAGTTGATG
CTACTGTCTTCCTTTGCAGCACTCAAGGTACAATGTATGAGCTTGACCTT
CTTGAAGGGAAGCCATCATGGACCACCTCTCTACAAACTTCAGCTGATGA
AGTGTTTTGGTCTACACCGACATTCAGTGCTGAAGGCTTGGTATTTGTAC
TCACTGGTGGTGGAAGACTTGTTGCCATAGATACGTCAACCAAAGAAACA
AAATGGTCGTTGGACCTTCATCGGAGTAAACTAAAAGACGATACAAAGGA
AGACGACAGAGGGAGTAATTCAAGTCCATATTATTCAGAAGTTGATAACA
TATTATACGTGGGAGCTGGATTTGGTGTTGTTTTCGCTATTAACCCTGAT
AATGGAGAAATTGAATGGCAACAACGTGTTGGCACCGGCATTTTCTTCAG
CTCGCCCCGGTTATCTAAAGATGGTATCCTGTTCATTGGCACAACTGATG
GCTTTTTGGTTGCCATGGatacaaaacaaaatggtagcatTTTATGGAAA
CTGGAAACTGGAGGCCCATTTGTGGGTACAGCTTTGATAACCAAGGGGTT
TGAGTCctagaaaattgtttgtttttgatAAATCCCTTTATGTAAGTATG
CTCAGCTCGttttaaaataagattttaaaatgCTTTGTTTAATCCACATc
tgctacatgttttttataagcatatctaggatCAGATATGGCAAAAATGA
GCCTACATTTTCCGATTTCTGCTATTTTTGCTgggattttacggattttc
gaaatttcactaaaatttcaCTTAGGATAAAAGCAATCTTTCAAGCATTT
TTTAGCCTTGTCAATCTCTCtgcctaagcatctctgagcaaGTCAATTTt
ggtatgcttataaagaaaaaacatgtatcttaCAGCGTTTTCGATCTTGT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_91:241000..254176+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073388 ID=TCONS_00073388|Name=TCONS_00073388|organism=Clytia hemisphaerica|type=transcript|length=13177bp|location=Sequence derived from alignment at scaffold_91:241000..254176+ (Clytia hemisphaerica)
tttagaGTTGAGAAATATAGAGAATTTCGAAAATATAATAGCTAGTACAG GAATCAATGATTAAACTTGTCCGTTCGACAGCTTTATCTTATTTTGTtgc aaatggtaggagatacgtTAAATGATGCCCTTTAATGTTTTactattttc ttgttttttagaGTCGAGAAATATAGAGAATCTCGAAAAATATAATACTG CACAGGAATCAATGATTAAACTTGTCCGTTCGacaattttatcttatttt gttttatttttggtaTTTGTTAACTCTCAAAATGAAGACAATTTTGTCAT CGAGTCCCCTGTTGAAGATGCACTTCGGGTGGAACAGAAAATCAACGAGC TGCCTACAGGCCACATGAAGCAACTGGGTGAACATGGAAAGGCTATCGAA GGAGTTATCACAGAGCTAGATTATATGATCGGTGGTAAAGACTTTTACGA GAAATTCGCACGCAAACGAAAACCTGTCATCTTTCGTGGTGTAACTCGTA AATGGAAATCAACTCGATACTGGAATAACGAAACCTATTTATTAGAAAAT TACGCGGATGTTGTTTTCGATGTTGAAACAGGGAAAGTTTACGATAACGC TTTAAATACTCGTAAAACGATGGATATGAAGGAATTCTTAACAGAGTATA AGAACCACACCCTGTACTTAGATTCCCCTTTCCCACACACTCCAATGATG CAAGACATTGAACTACCCCTTATGATGCAATGCGAAGGTAGACATGACAA ATTCACAAGCATGCATTTGTTATTCTCAAACGGTAACACCAGCTCCCCAC TACATCATGATGGTTATGAGAACTTTTTATCTTCGTTTTCTGGTGTCAAG GTGGTATATATTATCGAACCAAAGTATGGTAAAGGACTTTATGTTGAATT TGTGGAAGACTTTCCTGGATTGTCTCCTATAAATCCTCAAGGTGTCGATT TGGTCAAGTTCCCACTTTTCAAGGATGTCCCCTTTCATAAGGTATAATTA ATCTTTATCGTTTTTTATAATAAGATTATTAGTTTGTTCAAGCGTCGGTA AcgtgaaggtagagcatccagctacggtgcgcaagatCGTAGGTTCGAAC CTCAGCTGATGGTCTTACAAAACATTCCAAAACGGTACTTGAAGCTTGCT TGATGCTTAGGAATCAAGAGAAGGACTATTAAAGTAATCCAGGGTAAGAG TGGCGTCTTCCCCTACCTTCAGGGCGACAACTTTAGATAAGGGAGTCTTC AGGTCGCCCTCAACTGGGATCACAAACTTACGTTAGTACTAGTAAAAGTC AGGTTTGAACCATGGAGAACGTTCCTTAGACTTCTGTATTATACATTTTG AATGTGTACTCTTAGGATCCAAATAtaagggggaggggggttgAATAAAC AGAggtgttggaaaattttcgaaattttaataaacgagggggtcctaata aggtccagggggtcggaaaatttttgaaaacttaacaagcgggggggggg NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNggggggggggggggtgtttatttggaacctaagag tacttttTTCTTCGTTTTGATGTTTATTCTTTTCATTTGGTACAGGTGGT GATCAATCCTGGTGATATGCTGTACATCCCACAATACTGGTACCATCAAG TTCGTTCATATAAAACACCTAACATCGCAACTGCCATGTGGTTCTCTCTT TTCACCATACCCGATGCTGTAAGTCTGTCTGTTTGTCTGTCTGTATGCCT GTCTATCTTGTTTGAGAGAGAGAAAGAGTTATTCTTCCTAAGCAAAAGAA ACTGGCCTACAATCAcgatcgaaatatattgagattttagtgtattttaa cgtttttcagttCTGGCGAGAATTGCTCTTTTAGTACTtgtttcattgaa tatttcgattttggagatGTTCGATGGCCCAAGCCTTATTGCAActattt tgagcttttaaatccggAGATTCTAAGGTTTtataagtctcatgttaaaa ctcagatttaaaactctactttccaactgtagcttaacgcgcttaaaaat catttgaggtatttaaaatttcgcagggaaatcTCCTCTgtatcaaatat tttgtccatcacTGTATAAGGTTTAtgggaagaaaatttttgctgagttg GCTAAAATCCTTCTTTAGGCTCCAATGAAGATCATTGTGAGACCCACCAT TTGCTGGTCCGCTGCCAATTAGACATTTGGTGATGGCGACATCAATTTTC TGATCATcatcaatttgaatttttctatgaGCTCGTAAATGTTAAGGAGT TTCGCTCGCTTAAGGAGCGATGACCAAGTGGTCAAATGAGTCAACATCTC AAATCACGAATCCCCACGCCATCCAACTCCGTTCAATAACATACCGTAGT TACTGTTTGTCCGAGTTTTAATCCCATCTTCCTTTGCATTGATTTCTTTT GCAAGTCAATTAAACTTATTGAtgacaatacaaaagtaataGCTTGCACG CATTactacgaatcaagatgaaaaggattgtgggattgtgggtcaaatgt taaaagaaataattatgacgtttgcatagcggTGTGCGATTCTTAGAAAA CTAGCCATCTGATCGTGGATCCTATGAAAACAACCGAAATACTGCCTAAA ATTCctagattgggcttttccagaaaaaaccccccggacaacccagatta ccccggacagagcaaattttgatgattttttgctaccccacggacaatat atcctccacatgtacggacattttcttgAAGAGCCCATTTCTGAGTTATC TTACGTGAAATATCTTACCTTTGAATACCAAGCTTACAATATTTTTCAGG AAGAGTTCGGATACCGTGACGTTTTAAACATTGCCGACAAATTTGCAGTA GGCGTTGAAAATTCACCACCAACACTGGACTGTCTACACCAGAATCGTCC CTTGAAACAAATCAACAAAGAAACTGATTTAAGAGAATTTCCAGAGGCAC CCGTAAATGACCAAGGTATTATATACAATAGAGTCTTtaacttgaacctc tataattcgaatgacTCCTTTATCTCGAACAAGTTTTTTAGTTCCTTCAG TTAATAATCCcctataaaccttactccataactcgaaattcccTTAACTC AACtcaactcaaacaaatttgtgttcctggTTGAAACTAGTTATTAAGAC TCTACTGTACTGCCGAAAGATGTTTGAGATTTTTAGCATCCGCTGACGTA GCTCTTCATCCGTTGACGGAAAAAAAGTCCACGGCGACGAAAACCCGTTC GCTTTTGGCGATGGCTCCAGCGACGGACTTGGTCGTCAAGACTGTCTTCT GTTCTCGTTTTGATTGGCTTTGCTCGAGAAATTAATTATTCTTTACGTAT tgtcttttgggaattctctatatgacgtcaaaaagacaaagaatgTTTCT AAATGTTTGATAAATGAGACAAAAACTTTATAATTGTATTTTagtatttt aaaagttatcttccatTAAAAAGCTAAAAAGTGCACACTCAGAGTCCCGT GCTTACGCACTAATCATATGTACAgtattgattgaaaaaattgaaattcg acgtaaaaactttttaattgtATTTTACAGAGCAGGAGATAAACGGCGTG ACGCTGAGAGAAGAAGTAGGCGACGGGCAACCAACCATCTTTGCTGGTTC TGACGATACTTTCATCTATGCTGTGGATATGCTTACTGGTGATCTCAAAT GGAAAGTCAAAACCAAAAAGGATACAGGGTGATTTTCTTAGCCCTTTGTG cacgctgtttttttttttgaaaaagttgaaatttttctaatttttttttt ggaacatAAAACTTTGAAGTGCCATAAAAACTTGTAGCTTAtgatttaga agatggttttggtaccattagaAAGCTATTTGtatactctttctaaaagc attcggtttatgcccctttaaatcaagtggtcagtcAGACATAGTTTCAG CCCCCTACATtttgggttttgatgaaccaaaagctaggggggtgttaaaa gtatgactttcctaagggggggttgccagttaaggggggtcttcttacct aaggttgggtcttcttagataaggggatcttccttgaattatgaCTCTAT GAATTATGAATCGttccatttatactgattttctaaggggggtgtgaaat ttgaaatgaatttcctAACGGGGGTAAGCACTTAAGggggggttagcact taaggagggtcttcttacctaaggggggagggggtcttgacccctctaga aactatgccTCAGGAGCTATGGCTTCAAGTTTGAAACTcagtattttggc ttgttttggatGCATATGCGCTTCCCTCGTGGTCTAAGGGTTGAATGGAT TCTATTACGCCTGGACTATTAATTATCGCGATGTTTGCGAAATTTAGCTT GCGaaacatttgaaatttaaatattGGGTAAAACTCCTCATCACGTCTAA TTTTCAGTGAAAGATAGAGTGATTTTTTGGAATCTTGTCTACGCGAAGAA TTAAAAAAGTTGTCAATCTGCGAAAGCACGCGAATTGAATacaagaagaa cttaaaatcttaaatattttcattttgaagaattggtgtaaaaaagtgaa acatggaaaagtttcattttttattggtttaatcaaaataggggatttgg aaaactttctatgtttgtttttttgtaactatgggcgagcaccccgttGT TAAGAAAGATGTTGGCGAAAATCAATCCACTCCACTCAAGTGAAATTCCT AATCAATAGAGTGCGAATGACTGATGTTTTAGTCTCACAATCTACTCCTT CGAGAAAAAAACTCGAAACATTAGTGTATTTCTATTAGCATTTAATCTAG ACGTGTACAAAGTTCTTCCGGCTTTCACGTCtccaaattcaataaaattt gtaTCAAACTTGAGAATAATTTTGCTTTaattcacattttttttataaga acatctaaaatttttgaggccttcggatgttcttaacttatgagttttaa gcctaaaaatgttttcaacatgttcttattttgaccattctgtaaatatt tttgaccgttttctaagaaatagggtgttttcgagtccacaaagccttta aatgttcttaatttaatATTATGGCCAGCCTTATGTTCtgatatagttta ttcttataaaaaacgtgtttgtCTTAAAGTCCATTAGCCTTGACCACTGA TTGAAGTATAAAACCAGGAACATCTTTTTTGTAGATCAACATGTCTTTTC AACCAAGATAACACGCTTGTTTATTGTGGTGCTGATGACGGTTACCTGCG TGCAATGTTTATCCAGAACGGAACAGTGTACTGGCAATATCAAACATCAG GTAATTATCAGGTCACTGCGCAATCACTAGAATATCTCGGTTTATATTTT CCCTTGAGGCtttttctcaatcccggccaaccaAAATCTTGGTATTTCAA AGCGGCACCCTATTGGTACCACTACTCGATGTAGGTTCAAATACACTGAA aacgctagatctacttttctataaatatttttaatgtcGCGCTGATGGTG TCGTGCATTGTTGTAAGTGCTTCATTTACTTTTTTGCGTGTCCATATAAC ATCATTTTCCTAATAAACTCTGGTACAGCTGGTATAGTATACGTAGTCTA GGGCAATGTTTATAAGGGTCACTGATTTGCTTCTGTAATGTACATCATTT TAATCAACTGGTTGGTTTAACTTATTTAACAGCAACATTTTTTGACATAA CTTCTTcagaattgattttttttgaaaattccatttttcTATCTAAAGTA CAGTATAACCGTgtttcagaatttttgaaaatctagtCATTGATTACGAA ATTGACCCTGTTTTACTTTTAAAGTAAACTATTAAGAGGAAATAAAGTCA CATTTTTATCAGTGAATGTCAGCGCCGTCCTGTTCAAGactattttttct ttctctgtTCCTCAGGAGCTATCATCTCATCAGTGAAGATGGACGACgat ggtaatttatactttggCTGTCTCGATCACTACATGTACTCCATCAACAA gaaaggtgaaaaaaggtaAAGTGACTCTAGTGCGTCTCCTTTTTCAGGAA TCAattcaattgttttttctttcccttATCATAGCTTTCTAGACTCTAAA CttctaaaaaaattttataGATGGCGCAGGTTTCTGGGCAACCAAGTCTG GACTACACCGTTGTTGATACCTGAAATAGATCTTCTCCTAGTTGGAACAA AAGTTGAATCGGCGAATGACACGCGTGCGAACGCGTTCGCTTTGGAAATG ACGTCGGGTAATTTTGTATGGCGTTTTAAGACAGATGGTGGATTAGTTGC GTCACCTCGATTGAGTCCAGTTGATGCTACTGTCTTCCTTTGCAGCACTC AAGGTGTGTATAATTCAAAGATATCATATTCCTTTTAACACTAGATAGAC TAAATGCTCACAGATTTCCCTTAGAAGCGTGTCCAGTTTTGAAGTCGACT AGTCCGCCATGTGGTAGTCTAGAGCTAGACTACTAATTAACATCAGTNAG ACGGATGGTGGATTAATTGCTTCACCTCGATTGAGTCCAGTTGATGCTAC TGTCTACCTTTGCAGCACTCAAGGTGGGTATGATCCAAAGATATAATATT CCTTTTAACACTAGATAGACTAAATGCTCACAGATTTCCCTTAGAAGCGT GTCAAGTTTTGAAGTCGACTAGTCCGCCATGACTAGTCTAGAGCTAGACT ACTAATTAACATCAGCTTTCCTCAAAAACTTCTTTTACAGTGGTAGAAAA AACCTACCTagaagtttgtttacttttcgagTGTTTGAATTAGTATCACT ATTCCAACTTCCCGTAcggctttttttcttctttttgactttgagGCATG ATTGCTCCTACGTTTAATAAAGAATAGTGGTCTGGAAATCGAGACTAGCC ATGTTGCTTTATAATTTTTAATAGATTGAAAACGCTGTTAACAATCTGTG CTTATTTACAATCTTTTTACTCACAGCCAGATTGCATTAAATTAGATTAA ATAGCTTTAACTCTAGCTAAATTTCGTTCGATAATAAGTTAAAAAGCTTA AGCTTTAAGGAAGTGATAGTTATCGCACTGTACCGAGTTCTGAAGAGGCG CCTAAAGCTGCTTCTaaaggccggtttccacttgcgcgcgctttgatcgc actttttcgagcaaagctacCAGGCTATTAGCCTATCTCTATTCCAACAC GCGATTTTTAGaacggtgtcgaggaaaaagccgtggtcgtctggtacagg caaccaggctattggtcaaaagaaaaatgaagcaattccattggcgcgat ctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttttcgag cacgcgctacatttttatgacgtaatctttttttccaagcaaaaaggatt gaagctaaAAGGTGCGATCACAGtgtgcgcaagtggagaccggctgTAAT TGCAATTTTCGGTGCCTCGTTGATTTTTTAGCCATTAAATTAGcagtttt caatcaaaaaaatcttgcCTTCTGATAAAGGGCGCGCGGCAAAATACTAT CTAACGAGAATCACCATACGATTTTGCATGAATTTTGCTCGAGAAACCTG ATTTCTGAGACCATGTTCGGACGTTACGGATCTGTTctgttccgttccga aacggttccgaaacaagtgtgaacgtcaaaaagaagacgttacaaagcaa agcAGAtagaaacggtttcgctccactttttttcatcggaacggaactgc tccgttttcttgctccgaaacgttccaaaACAAATATGAACACGCTCGAT CCATAACGAAAATCACACTAGaacgaaacggaacagtaacgtgtgaacat ggtctgagTATAAAAATGTACAAAGTACCCTTTAGGTTGGACGCGATCAG gtattttttatgtttgaagTGTGTAATACAGAAAATGTTGCTTCTTCTtg tttagccaatcagattgtgGCTATTTTTTGGGCTTAAGATTAAACGAGag taccttattacacgaatattacttgacaagtattcaacggccttgaaatt aacacacCAAAAATTAATACGAATttgatttgctttttcaaggacaccac ggctggtttttaTAAGGGgatttttattaacacgaaatttttttaataaa attcgtaataaaatgactagtaatatttgtgtaataaggtatataGTAGG GGCCAAGCCTGAgattccgtgacatcttttttacgacctagccattttta gtctattccaaagaacagtatactACAAGATATTCTTGaaagggaggacg cggattaggcccgggaaaactttttatgactgcaagggaaaataaggagt agagaaatagcttattttcaaaagtcaaaataaacaaaaatgattggtac catctgatagagcatgaaattcggAAAATTCggaaaataatgataaaaac tatattttttaatgttcacAGGTACAATGTATGAGCTTGACCTTCTTGAA GGGAAGCCATCATGGACCACCTCTCTACAAACTTCAGCTGATGAAGTGTT TTGGTCTACACCGACATTCAGTGCTGAAGGCTTGGTATTTGTACTCACTG GTGGTGGAAGACTTGTTGCCATAGATACGTCAACCAAAGAAACAAAATGG TCGTTGGACCTTCATCGGAGTGAGAAACTTGTTTACTATTTAAAAGTGTC TTTGCGTACAATTATCTGAACTTTTTAAGAGGCAAAGCCAAACTGTTCTT TTTCTCCtgttaaaacttgaaaaaacgtAGTAATAGACGGCAGTAATCAC AGATATCGTATATAAAACAAAGCAatagatagagctactccgcCTCTtgc ttaggcaaaattgggcttttccagaaatagtccgtgcccctgttgaggat atcggatatccaggaggTTAAATatctaccttattggaactaattttcgc gggaactaattttcgcggtcgaaaaaaaatatccaaaaaattgcatttcg ccgGTTTtatttttcgcggttttttccattctggaattttggcgggtttt aattttcgcggttttgcccttttttggacaaatttctttcattttcctag ggatttttcaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactctcaaaattttt cgcgggatcaaattttcgcgattttgacgaaaaaccgcgaaaaacgctaa aattaaaacccgcgaaaattagttccaataaggtacaagggagcggatat ccagggggtaaagtgtcttttcaaataaaaaatacgatatccaggggtaa gcatctttataagagaggatattcAGGGgattgagcatatttttaagagt ggatatccaggggtctttactaacaaagtaggatatccaggggatttcga tacttcgaaaaatcaatatcctcaacagtgggagtaaaaatcttttctgg aaaagcccatgtGCCATCTTCACTGAGAAGACCACCGTTCTGTGCCGATA ATTTGATCCATCCAGATCAATCATGACCATTCTCTCGCTTCCCGCCATGT CAGTTGTtttgttttaattgaaaaaaatgccgGTACCAAATTCTAGTCTA CTACTGTAGACTACTCGTAGATTtataaaagcccgaagggctagatagag tgcttttgctgaaaagtgtgccgagattagataggaaatcctacctaagt cacgtgaaattacaatagaatttcagcgcttgaccaatcagaagcttcgc aggtttgcgaaaacaatagcagcaataatTCTTCCGATAGCCCGACatgc ccttcgggcttataaatCTATGAGGCTACTCAACAAAGATTGATTGTTTT AGTGTTTTAGTAATTTGTTTACTCAAAgtattcaaaaatgttttcttctg cTGCTTTTTAGGTAAACTAAAAGACGATACAAAGGAAGGTATAATGCGAT ATTTATTTTCTCAATATCTTGATGCTTCTCCGAATTCCAGCGAGCATCTC GACTCTTCTCTATCTTAGGGCAATTTTCGACTATTTAggctctttcaaaa aaaaactcatgTATAGGGGGGTTGAATAATatccatttttttttcaatga tctTTGCACGTGTTTTACCGCTGGAAAGCATCAAATTGGATAGGATACCC ATAATTATAGGATGGTGAAAATTAGACCTGGACATGCACATGaagttttt cacaattttttcacaaattttggaATACCCATGGTATATCCTCCACACAc cggtgaatttttttctggaagagccctttccagaaaaaatcacCTTTCAT GTTGACCAGCAGAATGTCATTtcatttatcattcaaactgtcctttgatt tttaaggttttgtttttgaataagagggatatcgtttgcttactcatcaa ttttgattcacaagctttttaacataggattgacacggatgtggagcaag attggtcagaaagaggaaaagaaaaacatttttttgcttacatcAGCATA ATGtaacaaaaggcagacactgtcctgatatgaaacatttgtctgatata aaacggaaacacttatgtaaaaagaaaacctttaaggaCTGAAACTCTCC TAATCCCTTAACTTTTGGCCAATTGCTATTATTAAGTAAGAAATGTTGCC AAACAAATATTTGGCAAATATGTTCACTTTCATGTGAATAATGGTTTTCT TTACAAACACTCAAttttcattgttgttttttatataatacatgtttttt attatgagaacaaactgtataagaacatggcttccatggccaaaatatta agatcGAGTTAAggagttaagaacattttaaggcctcgcggactttaaaa cacccaatttcttaggaaattgcacaaaaatgcccacaaaatggtgaaaa taagaaggttttatttttacataagggTTGCTGTATCATATCAAGACaat gtctgcctattgttatattgtgctgatatttttttttcctttctgaGATC TGACCAATCTtactccacatccgtgtcaattcaatataaaaaagcttgta aattaagattgacgagtaagcaaacgatatcactcttatttaaaaacaaa acctttaaaaagctCAAAACCTTAAGAACATATACGAAGGcttgaaagat tttgaatgttcttaaaaaaaacacatattATAATGTGTTATATATTTTAT GATATCTTTCAGACGACAGAGGGAGTAATTCAAGTCCATATTATTCAGAA GTTGATAACATATTATACGTGGGAGCTGGATTTGGTGTTGTTTTCGCTAT TAACCCTGATAATGGAGGTATTTATTTCTACCATTTTACATTTCTTTGAG ATGGAGGATGAATCAATCTTCCATAAGATTCTCGGTGGAAAGTATCCTCA GTCAGTGTTACTTTCATAATTGTGGGGTAACTTTCATAAGCCTTCAGATT GCAATTTTTTCTGTTCCTTGATTTATCTGCAAGTCAGAAACATAATATCT TTGCATTCAAACTTGCAAACTTGCAAACCAAAAGANAACATAATATCTTT GCATTCAAACTTGCAAACCAGAAGAGTTTACTGTTTGGAGGCTATGTAGG TTACCCCTCCTTTATGAAAGTAACCCAAATTTCGGTAATCGGAGAATAAT CTTTAAAGAGCCACTTTTTCACACTAGCAATTTTTCTCACACTAGCAACT TTTCTCACACTAGCAACTTTTCTCACACTAGCAACTTTTCTCGCACTAGT AACTTTTCTCACACCAGCATTTAAAGTGTTGTCTCTCTTtttccaacttt caacaatTTTCTCTCGGTTTTTTCTTCTCAAGAAATTGAATGGCAACAAC GTGTTGGCACCGGCATTTTCTTCAGCTCGCCCCGGTTATCTAAAGATGGT ATCCTGTTCATTGGCACAACTGATGGCTTTTTGGTTGCCATGGatacaaa acaaaatggtagcatTTTATGGAAACTGGAAACTGGAGGCCCATTTGTGG GTACAGCTTTGATAACCAAGGGGTTTGAGTCctagaaaattgtttgtttt tgatAAATCCCTTTATGTAAGTATGCTCAGCTCGttttaaaataagattt taaaatgCTTTGTTTAATCCACATctgctacatgttttttataagcatat ctaggatCAGATATGGCAAAAATGAGCCTACATTTTCCGATTTCTGCTAT TTTTGCTgggattttacggattttcgaaatttcactaaaatttcaCTTAG GATAAAAGCAATCTTTCAAGCATTTTTTAGCCTTGTCAATCTCTCtgcct aagcatctctgagcaaGTCAATTTtggtatgcttataaagaaaaaacatg tatcttaCAGCGTTTTCGATCTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045541XLOC_045541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073388-exon-scaffold_91-1491911889:241000..241990TCONS_00073388-exon-scaffold_91-1491911889:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:241000..241990TCONS_00073388-exon-scaffold_91-1510915933:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:241000..241990TCONS_00073388-exon-scaffold_91-1575043694:241000..241990Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:242895..243017TCONS_00073388-exon-scaffold_91-1491911889:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:242895..243017TCONS_00073388-exon-scaffold_91-1510915933:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:242895..243017TCONS_00073388-exon-scaffold_91-1575043694:242895..243017Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:244149..244314TCONS_00073388-exon-scaffold_91-1491911889:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:244149..244314TCONS_00073388-exon-scaffold_91-1510915933:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:244149..244314TCONS_00073388-exon-scaffold_91-1575043694:244149..244314Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:244930..245077TCONS_00073388-exon-scaffold_91-1491911889:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:244930..245077TCONS_00073388-exon-scaffold_91-1510915933:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:244930..245077TCONS_00073388-exon-scaffold_91-1575043694:244930..245077Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:246584..246699TCONS_00073388-exon-scaffold_91-1491911889:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:246584..246699TCONS_00073388-exon-scaffold_91-1510915933:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:246584..246699TCONS_00073388-exon-scaffold_91-1575043694:246584..246699Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:247315..247414TCONS_00073388-exon-scaffold_91-1491911889:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:247315..247414TCONS_00073388-exon-scaffold_91-1510915933:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:247315..247414TCONS_00073388-exon-scaffold_91-1575043694:247315..247414Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:247520..247752TCONS_00073388-exon-scaffold_91-1491911889:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:247520..247752TCONS_00073388-exon-scaffold_91-1510915933:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:247520..247752TCONS_00073388-exon-scaffold_91-1575043694:247520..247752Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:249871..250068TCONS_00073388-exon-scaffold_91-1491911889:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:249871..250068TCONS_00073388-exon-scaffold_91-1510915933:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:249871..250068TCONS_00073388-exon-scaffold_91-1575043694:249871..250068Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:251711..251737TCONS_00073388-exon-scaffold_91-1491911889:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:251711..251737TCONS_00073388-exon-scaffold_91-1510915933:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:251711..251737TCONS_00073388-exon-scaffold_91-1575043694:251711..251737Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:253012..253116TCONS_00073388-exon-scaffold_91-1491911889:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:253012..253116TCONS_00073388-exon-scaffold_91-1510915933:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:253012..253116TCONS_00073388-exon-scaffold_91-1575043694:253012..253116Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1491911889:253632..254176TCONS_00073388-exon-scaffold_91-1491911889:253632..254176Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1510915933:253632..254176TCONS_00073388-exon-scaffold_91-1510915933:253632..254176Clytia hemisphaericaexon
TCONS_00073388-exon-scaffold_91-1575043694:253632..254176TCONS_00073388-exon-scaffold_91-1575043694:253632..254176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:241000..254176 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61422 3.30774 1.52826 0.496675 27.7919 20.753 20.3323 21.5239 12.0686 16.4545 10.3676 9.77946 9.89538 11.1725 9.04898 10.1392 9.64738 12.3564 11.4533 16.6349 6.20639 6.52939 6.32351 8.15379 12.7765 12.4515 5.3556 3.93883 4.97595 4.8154
Blast
BLAST of TCONS_00073388 vs. Swiss-Prot (Human)
Match: KDM8 (Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.813e-20
Identity = 62/230 (26.96%), Postives = 104/230 (45.22%), Query Frame = 2
Query:  437 KDFYEKFARKRKPVIFRGVTRKWKSTRYWNNETYLLENYADVVFDVETGKVYDNALNTRKTMDMKEFLTEY-----------KNHTLYLDSPFPHTPMMQDIELPLMMQCEGRHDKFTSMHLLFSNGNTSSPLHHDGYENFLSSFSGVKVVYIIEPKYGKGLYVEFVEDFPGLSPINPQGVDLVKFPLFKDVPFHKVVINPGDMLYIPQYWYHQVRSYKTPNIATAMWFS 1093
            + F E+F    +PVI +GV   W   + W+ E Y+ E        VE G  Y +   ++  M + EF+++Y             H L+   P     + QDI +P         ++  +++  F    T SPLH D  +NFL    G K + +  P+    LY          S ++ +  DL KFP F   PF   +++PG++L+IP  ++H VR+    + + + W+S
Sbjct:  193 QHFREQFLVPGRPVILKGVADHWPCMQKWSLE-YIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIP----ELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDL-SFSVSFWWS 416          
The following BLAST results are available for this feature:
BLAST of TCONS_00073388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KDM81.813e-2026.96Lysine-specific demethylase 8 OS=Homo sapiens GN=K... [more]
back to top