TCONS_00073387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073387
Unique NameTCONS_00073387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073387 ID=TCONS_00073387|Name=TCONS_00073387|organism=Clytia hemisphaerica|type=transcript|length=1247bp
CGGACGGCTTGGGGAAGTGATCGAAGTAACAGTACCAGAAGATGCAACTT
GTTTTGTAAACAACCGTTGGTGCTCAACAAAGTACTTTTTAGACCAACGG
TTTTCACAAAGGCTTTCGTCGAACAGAAGGTCACACTTTGGAAGGTTCAC
GCAATGGAGCGAGATAAAAAATATGCCTACATGGCAAACGCATTGAATTA
TAAAAATGACAGCGGCAGGAATCAATAGTACTGTTGCGAACATCTGTTTT
GCCAATGGCAGAAAGCTCTTCACAAACAAAGTCAGCTGAATATGACGTCA
AGTGGCTCCTGATAGCTTGAATATTAGGATCACTTGGAGCTTCAATTCTT
GCTTCCAGGAATTCGTTAGCGACTTTCAGGTATCAGCGCGCAGTGAGGAG
AGAACCGTGAAAAAGTCACGCACAAACTCTTCTAAAGAGCTTCGATGACC
GATGACTGACTTCAATTTAGAGTTTATACTCTCAAGCCGATTGTTAGTTg
aattcaaaaagtttccatattCGGCTTTAAAACATTTCACCCACTCATTT
GAAATCGGCTTCCAATTTTTAACATAATACTGCCTCAATTTTGGACATTC
GATAGCCATAAACTCTGCCTGAAAGTCGTCGAAAGCTTCCTTTGACTGAG
CATAGCAAAGGTTTTGGAAAATGATTTTTGCATTCTCGTTAGTGACAGAG
TTCAAAGAAAGATTACTTAATTCACGCTTGAAAGTTTTCAATGCAGGAAA
CAGACAAATGAGTGTGGGGACATTTAGGATCTCAATGATTCGATTACGCT
CGATTAATGTCCTTATCTGCCATTACTACTCTCAGTCCATCAGCaggatt
ttcttttttgaatgtttCGATCAGCCAagttaaattttctttggtcTCGT
TGACCATAAGTGCAACCCCAACAACTTCACTTTGGCCCATCGAATCTTCC
ACAAGAAAAATGTATGCTGGCAATCGAAGTTCATTTAGCTTAAAGGTGGC
ATCGAGAAAAAGAATTTCAGGGAAATTTGCAAAGTCTAATTTCATTGATT
TGTCCTGAAAAAACATGCccaaaaattcatcattttcattGTGGTTCACA
GTCACCGAGCAACCTTAAAGAAAGAGAAAACTGTGGTTTTACTTTNGTTT
GTCCTGAAAAAACATGCccaaaaattcatcattttcattGTGGTTGACAG
TCACCGAGCGACCTTAAAGAAAGAGAAAACTGTGGTTTTACTTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_91:156898..158253+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073387 ID=TCONS_00073387|Name=TCONS_00073387|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at scaffold_91:156898..158253+ (Clytia hemisphaerica)
CGGACGGCTTGGGGAAGTGATCGAAGTAACAGTACCAGAAGATGCAACTT
GTTTTGTAAACAACCGTTGGTGCTCAACAAAGTACTTTTTAGACCAACGG
TTTTCACAAAGGCTTTCGTCGAACAGAAGGTCACACTTTGGAAGGTTCAC
GCAATGGAGCGAGATAAAAAATATGCCTACATGGCAAACGCATTGAATTA
TAAAAATGACAGCGGCAGGAATCAATAGTACTGTTGCGAACATCTGTTTT
GCCAATGGCAGAAAGCTCTTCACAAACAAAGTCAGCTGAATATGACGTCA
AGTGGCTCCTGATAGCTTGAATATTAGGATCACTTGGAGCTTCAATTCTT
GCTTCCAGGAATTCGTTAGCGACTTTCAGGTATCAGCGCGCAGTGAGGAG
AGAACCGTGAAAAAGTCACGCACAAACTCTTCTAAAGAGCTTCGATGACC
GATGACTGACTTCAATTTAGAGTTTATACTCTCAAGCCGATTGTTAGTTg
aattcaaaaagtttccatattCGGCTTTAAAACATTTCACCCACTCATTT
GAAATCGGCTTCCAATTTTTAACATAATACTGCCTCAATTTTGGACATTC
GATAGCCATAAACTCTGCCTGAAAGTCGTCGAAAGCTTCCTTTGACTGAG
CATAGCAAAGGTTTTGGAAAATGATTTTTGCATNAAACATAAAACTGCCT
CAATTTTGGACAGTCGATAGCCATAAACTCGTCGTCGTCGAAAGCTTCCT
TTGTGTGAACATAGCAAAGGTTTTGGAAAATGATTTTTGCATTCTCGTTA
GTGACAGAGTTCAAAGAAAGATTACTTAATTCACGCTTGAAAGTTTTCAA
TGCAGGAAACAGACAAATGAGTGTGGGGACATTTAGGATCTCAATGATTC
GATTACGCTCGATTAATGTCCTTATCTGCCATTACTACTCTCAGTCCATC
AGCaggattttcttttttgaatgtttCGATCAGCCAagttaaattttctt
tggtcTCGTTGACCATAAGTGCAACCCCAACAACTTCACTTTGGCCCATC
GAATCTTCCACAAGAAAAATGTATGCTGGCAATCGAAGTTCATTTAGCTT
AAAGGTGGCATCGAGAAAAAGAATTTCAGGGAAATTTGCAAAGTCTAATT
TCATTGATTTGTCCTGAAAAAACATGCccaaaaattcatcattttcattG
TGGTTCACAGTCACCGAGCAACCTTAAAGAAAGAGAAAACTGTGGTTTTA
CTTTNGTTTGTCCTGAAAAAACATGCccaaaaattcatcattttcattGT
GGTTGACAGTCACCGAGCGACCTTAAAGAAAGAGAAAACTGTGGTTTTAC
TTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045540XLOC_045540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073387-exon-scaffold_91-1491911889:156898..157548TCONS_00073387-exon-scaffold_91-1491911889:156898..157548Clytia hemisphaericaexon
TCONS_00073387-exon-scaffold_91-1510915933:156898..157548TCONS_00073387-exon-scaffold_91-1510915933:156898..157548Clytia hemisphaericaexon
TCONS_00073387-exon-scaffold_91-1575043694:156898..157548TCONS_00073387-exon-scaffold_91-1575043694:156898..157548Clytia hemisphaericaexon
TCONS_00073387-exon-scaffold_91-1491911889:157658..158253TCONS_00073387-exon-scaffold_91-1491911889:157658..158253Clytia hemisphaericaexon
TCONS_00073387-exon-scaffold_91-1510915933:157658..158253TCONS_00073387-exon-scaffold_91-1510915933:157658..158253Clytia hemisphaericaexon
TCONS_00073387-exon-scaffold_91-1575043694:157658..158253TCONS_00073387-exon-scaffold_91-1575043694:157658..158253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:156898..158253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102537	0	0.0386992	0.0757222	0.0921844	0.145691	0.219712	0.205692	0.0288019	0	0.103884	0.045526	0.068194	0.165247	0	0	0.051316	0.0262986	0	0.0380198	0	0.145069	0	0	1.35777	2.3168	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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