TCONS_00073386 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073386
Unique Name	TCONS_00073386
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1676

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_91:82369..87649+
coding sequence from alignment at scaffold_91:82369..87649+

transcript sequence

>TCONS_00073386 ID=TCONS_00073386|Name=TCONS_00073386|organism=Clytia hemisphaerica|type=transcript|length=1676bp
TTTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTG
ATGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATG
GACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCC
TACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCC
GGGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCT
TTACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTC
ATACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAA
CACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGG
CTTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAA
CGTTGtttgtgttgttgttgatgaAGCCCATAAAATTTCGTGGGGTGTTC
CTGCTTCATCTTCTACAGAAAGCGTATTCAGAGAAGCCTTTTCTCGCATC
GGAGAGATTCGATCATTTTGTTCAGAGAAAGTTCCCGTTCTGGCCCTTAG
CGCAACAATTGAGATGGACTTCACTGAAATTTTGCGTGGTGCATGCAGTC
TGTCTAAATATGTAAAGTATATTCATTCTTCTCCTGATAGAAAGAATATT
AGACTATCAATCGTAGATGCTGGGAGCAAATCAATATCGTGCTTCAATTG
GCTGCTCAACATTATCAGtcaaaacagtgaaaacactccaAAAGTGTTGA
TATATTGTCGATCTCAGAAACTGGTTTCTTGGTTATTTGGGCAGTTTCTA
TCCAAACTTAGATTAGGAATCTACAAAAATCGGGAAAAGCATTATGATAA
TTTTCTTGTTGGCATGTTTCATGCAGACACATCACCACACAACAAAGAGA
AGTACCTTGCTTCGCTTACTTCTGTAGATGATACATTACCTCGTGTCATA
ATTGCAACAAGCACAATCGGGTGTGGTATCAATGCAAAAAGATTAAAGTA
TGTTTGTCATTTTGGGCCTGCTTTTTCACTGCCAGCAGATTGGGCGGGCA
GGACGGAATGATGAATCGGATTATCATGCCATATTATACCCAAATAAGAC
TCAGGGCAGCAGATGGCTCCATCTTAATACGAAAGAATGATTTTAAAACT
GTGTAGGCATATTTACTTCTTCCATAACACTTGAAATAAAGGACTGCAAC
TCGATAATGCTCAAACAGCCTTTCTCCATCCCCCTCTTTGATTGCATCAT
TTATTGACCTCAACAACAAATTGTAAGTAAACAATGCTTTCTGATAACTC
AATTTGTGATTGATAGTTTCCTTCTCTTCCTCCTCAGTAGGTTCGTTAGT
TGACTCCATAGCATTTCTAGAAATGAAGAAAttatttctatatatttttt
caaatattattgtATTTGAGTGATATTTTCTGCTAAACATTTTCTGTTAT
ATCAGATTCtattgtaactttttattttagcaCATTTTCGATAGAGCTTT
CAAAGATTATTTTATACTAAACTTTAGACAGGatatctattttttattac
cTGTCATATTGGTGCTTAGCAACTTCGTGGCTGTCTCGCCCGTTTTTTGT
CTTGTACggtttttttgttgtgtttt

Run BLAST on NCBI

protein sequence of TCONS_00073386-protein

>TCONS_00073386-protein ID=TCONS_00073386-protein|Name=TCONS_00073386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
FKSQMTEQSSLEKIATDAIKKVDSNFSLKRKQMDCIDNVVAGKDTLAILP
TAYGKSMIYQLLPSIFRALPNSSKHPIVLVVSPLQNLIPNQIAEAEELGS
YLNIKACSLDKCSDVETLKMNGYNILFGIPEKWLLSSVKDFLTTSFLRKN
VVCVVVDEAHKISWGVPASSSTESVFREAFSRIGEIRSFCSEKVPVLALS
ATIEMDFTEILRGACSLSKYVKYIHSSPDRKNIRLSIVDAGSKSISCFNW
LLNIISQNSENTPKVLIYCRSQKLVSWLFGQFLSKLRLGIYKNREKHYDN
FLVGMFHADTSPHNKEKYLASLTSVDDTLPRVIIATSTIGCGINAKRLKY
VCHFGPAFSLPADWAGRTE

Run BLAST on NCBI

transcript from alignment at scaffold_91:82369..87649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073386 ID=TCONS_00073386|Name=TCONS_00073386|organism=Clytia hemisphaerica|type=transcript|length=5281bp|location=Sequence derived from alignment at scaffold_91:82369..87649+ (Clytia hemisphaerica)
TTTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTG
ATGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATG
GACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCC
TACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCC
GGGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCT
TTACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTC
ATACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAA
CACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGG
CTTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAA
CGTTGtttgtgttgttgttgatgaAGCCCATAAAATTTCGTGgtaagtaa
tttttatttctatgaAAATGCCTAAAGCAAGGCCTTTTTATTTGCTAGCA
AATTGAAACAGAAAAATCTTTCATCCTGCATATATGTTCCatgtattttt
taaatcaaaatttcaatttgtgACATTCCCAGGCTCAATCATGATATATC
ATGATATATCTTAACAGAATCAATGCcaagaaaaaagcaaaacgaATTTC
GACATTCGATTTTGCAACACTGTACACAACCCTTCCACACGATCTTCTCA
TTGAATTCTGGGTTGTACAAAATTCTTCGCCTGTTATTGGACATCTTAAC
AGAATCAATGCcaagaaaaaagcaaaacgaATTTCGACATTCGATTTTGC
AACACTGTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NATAAGCATGAGGCTCAAAAAATTCGTTTTGCTAAGCATAGAGGCTCACC
AAAATTTACCCTTACTGCATTGAGAagttttttactctttttttcaGGGG
TGTTCCTGCTTCATCTTCTACAGAAAGCGTATTCAGAGAAGCCTTTTCTC
GCATCGGAGAGATTCGATCATTTTGTTCAGAGAAAGTTCCCGTTCTGGCC
CTTAGCGCAACAATTGAGATGGACTTCACTGAAATTTTGCGTGGTGCATG
CAGTCTGTCTAAATATGTAAAGTATATTCATTCTTCTCCTGATAGAAAGA
ATATTAGACTATCAATCGTAGATGCTGGGAGCAAATCAATATCGTGCTTC
AATTGGCTGCTCAACATTATCAGtcaaaacagtgaaaacactccaAAAGT
GTTGATATATTGTCGATCTCAGAAACTGGTTTCTTGGTTATTTGGGCAGT
TTCTATCCAAACTTAGATTAGGAATCTACAAAAATCGGGAAAAGCATTAT
GATAATTTTCTTGTTGGCATGTTTCATGCAGACACATCACCACACAACAA
AGAGAAGTACCTTGCTTCGCTTACTTCTGTAGATGATACATTACCTCGTG
TCATAATTGCAACAAGCACAATCGGGTGTGGTATCAATGCAAAAAGATTA
AAGTATGTTTGTCATTTTGGGCCTGCTTTTTCACTGCCAGCAGATTGGGC
GGGCAGGACGGAATGATGAATCGGATTATCATGCCATATTATACCCAAAT
AAGACTCAGGGCAGCAGATGGCTCCATCTTAATACGAAAGAATGATTTTA
AAACTGTGTAGGCATATTTACTTCTTCCATAACACTTGAAATAAAGGACT
GCAACTCGATAATGCTCAAACAGCCTTTCTCCATCCCCCTCTTTGATTGC
ATCATTTATTGACCTCAACAACAAATTGTAAGTAAACAATGCTTTCTGAT
AACTCAATTTGTGATTGATAGTTTCCTTCTCTTCCTCCTCAGTAGGTTCG
TTAGTTGACTCCATAGCATTTCTAGAAATGAAGAAAttatttctatatat
tttttcaaatattattgtATTTGAGTGATATTTTCTGCTAAACATTTTCT
GTTATATCAGATTCtattgtaactttttattttagcaCATTTTCGATAGA
GCTTTCAAAGATTATTTTATACTAAACTTTAGACAGGatatctatttttt
attaccTGTCATATTGGTGCTTAGCAACTTCGTGGCTGTCTCGCCCGTTT
TTTGTCTTGTACggtttttttgttgtgtttt

Coding sequence (CDS) from alignment at scaffold_91:82369..87649+

>TCONS_00073386 ID=TCONS_00073386|Name=TCONS_00073386|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_91:82369..87649+ (Clytia hemisphaerica)
TTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTGA
TGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATGG
ACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCCT
ACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCCG
GGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCTT
TACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTCA
TACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAAC
ACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGGC
TTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAAC
GTTGtttgtgttgttgttgatgaAGCCCATAAAATTTCGTGGGGTGTTCC
TGCTTCATCTTCTACAGAAAGCGTATTCAGAGAAGCCTTTTCTCGCATCG
GAGAGATTCGATCATTTTGTTCAGAGAAAGTTCCCGTTCTGGCCCTTAGC
GCAACAATTGAGATGGACTTCACTGAAATTTTGCGTGGTGCATGCAGTCT
GTCTAAATATGTAAAGTATATTCATTCTTCTCCTGATAGAAAGAATATTA
GACTATCAATCGTAGATGCTGGGAGCAAATCAATATCGTGCTTCAATTGG
CTGCTCAACATTATCAGtcaaaacagtgaaaacactccaAAAGTGTTGAT
ATATTGTCGATCTCAGAAACTGGTTTCTTGGTTATTTGGGCAGTTTCTAT
CCAAACTTAGATTAGGAATCTACAAAAATCGGGAAAAGCATTATGATAAT
TTTCTTGTTGGCATGTTTCATGCAGACACATCACCACACAACAAAGAGAA
GTACCTTGCTTCGCTTACTTCTGTAGATGATACATTACCTCGTGTCATAA
TTGCAACAAGCACAATCGGGTGTGGTATCAATGCAAAAAGATTAAAGTAT
GTTTGTCATTTTGGGCCTGCTTTTTCACTGCCAGCAGATTGGGCGGGCAG
GACGGAATGATTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAA
TTGCAACTGATGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGA
AAGCAGATGGACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGC
TATCCTTCCTACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTT
CAATCTTCCGGGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTG
GTTTCGCCTTTACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGA
ACTTGGTTCATACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAG
ACGTTGAAACACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCT
GAAAAATGGCTTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCT
TCGAAAGAACGTTGtttgtgttgttgttgatgaAGCCCATAAAATTTCGT
GGGGTGTTCCTGCTTCATCTTCTACAGAAAGCGTATTCAGAGAAGCCTTT
TCTCGCATCGGAGAGATTCGATCATTTTGTTCAGAGAAAGTTCCCGTTCT
GGCCCTTAGCGCAACAATTGAGATGGACTTCACTGAAATTTTGCGTGGTG
CATGCAGTCTGTCTAAATATGTAAAGTATATTCATTCTTCTCCTGATAGA
AAGAATATTAGACTATCAATCGTAGATGCTGGGAGCAAATCAATATCGTG
CTTCAATTGGCTGCTCAACATTATCAGtcaaaacagtgaaaacactccaA
AAGTGTTGATATATTGTCGATCTCAGAAACTGGTTTCTTGGTTATTTGGG
CAGTTTCTATCCAAACTTAGATTAGGAATCTACAAAAATCGGGAAAAGCA
TTATGATAATTTTCTTGTTGGCATGTTTCATGCAGACACATCACCACACA
ACAAAGAGAAGTACCTTGCTTCGCTTACTTCTGTAGATGATACATTACCT
CGTGTCATAATTGCAACAAGCACAATCGGGTGTGGTATCAATGCAAAAAG
ATTAAAGTATGTTTGTCATTTTGGGCCTGCTTTTTCACTGCCAGCAGATT
GGGCGGGCAGGACGGAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045539	XLOC_045539	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00073386-protein	TCONS_00073386-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00073386-exon-scaffold_91-1491911889:82369..82860	TCONS_00073386-exon-scaffold_91-1491911889:82369..82860	Clytia hemisphaerica	exon
TCONS_00073386-exon-scaffold_91-1510915933:82369..82860	TCONS_00073386-exon-scaffold_91-1510915933:82369..82860	Clytia hemisphaerica	exon
TCONS_00073386-exon-scaffold_91-1575043694:82369..82860	TCONS_00073386-exon-scaffold_91-1575043694:82369..82860	Clytia hemisphaerica	exon
TCONS_00073386-exon-scaffold_91-1491911889:86466..87649	TCONS_00073386-exon-scaffold_91-1491911889:86466..87649	Clytia hemisphaerica	exon
TCONS_00073386-exon-scaffold_91-1510915933:86466..87649	TCONS_00073386-exon-scaffold_91-1510915933:86466..87649	Clytia hemisphaerica	exon
TCONS_00073386-exon-scaffold_91-1575043694:86466..87649	TCONS_00073386-exon-scaffold_91-1575043694:86466..87649	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_91	supercontig	scaffold_91:82369..87649 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0323985	0.143642	0.035709	1.24629	0.686547	1.464	1.93904	0.375465	0.697982	0.262652	0.428243	0.296317	0.333575	0.115737	0.22506	0	0.0978057	0.0355812	0.0323005	0	0	0	0	0	0.103316	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR011545	DEAD/DEAH_box_helicase_dom
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00073386 vs. Swiss-Prot (Human)

BLAST of TCONS_00073386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00073386 (transcript) - C. hemisphaerica