TCONS_00073381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073381
Unique NameTCONS_00073381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073381 ID=TCONS_00073381|Name=TCONS_00073381|organism=Clytia hemisphaerica|type=transcript|length=806bp
NTAATGGCGGCGAAGGGGCGTGGTTCCATCATTATCTTTTCCACCCGAGA
TCATTACTTGAGAGATTATGGATATCAAAAGAGAATGGATGAATTAGAAG
CGAATGGAACCTGGAAACTAGCCAAAAGTCTTTTGACTCACAAATATGAT
AAACTGGGTGATCAAAACCTTGGAAGATACAAAAAGACCGACGTAAGAAT
ATGTGCCTATGAAATCTTGTGATCATAAAGTATTAGAAATTCaaactaaa
atgtcgaaatgaACAATctaataaaattttaacttcgtttttttaattca
ttgaaTGTTTTTCCACTAACATAACTTGCCTCGTGtccaaacaattacca
tggtgattatgtcccctgagacatgaaatgattttttttatgaatagaat
aGTTTTAATAGTAAAAGTTTTAATAAaaccgctgggagttaatcaccatg
acaataatttcaaaacgaggcaagtatTGTTCGTGAcgtgatttatgaaa
aggtcttttATTCGTTATCGTTTCCAAATAATACTCGCATTGAAAGTTCA
AATGGTACCCGTCCGTTTGTTGAAGTGAAAAAAAGCAGCAAAAAACAGCT
TGGTAactccccagctggcacacaacgtgtttcaacgttcatctgacgtt
atatggatgttgtgaacgttaaataaacgttgaaacaacgttgtgtgcca
gctgggtctcTAGCGGCCTAGAGTCTTTagcttatcttttcaacggtata
tagCTTATAAGTTTAAAGCATGGATATACTCAGAAATATCTATTCTGATC
TTCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_90:289698..290503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073381 ID=TCONS_00073381|Name=TCONS_00073381|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_90:289698..290503 (Clytia hemisphaerica)
CTCGAAGATCAGAATAGATATTTCTGAGTATATCCATGCTTTAAACTTAT
AAGctatataccgttgaaaagataagctAAAGACTCTAGGCCGCTAgaga
cccagctggcacacaacgttgtttcaacgtttatttaacgttcacaacat
ccatataacgtcagatgaacgttgaaacacgttgtgtgccagctggggag
tTACCAAGCTGTTTTTTGCTGCTTTTTTTCACTTCAACAAACGGACGGGT
ACCATTTGAACTTTCAATGCGAGTATTATTTGGAAACGATAACGAATaaa
agaccttttcataaatcacgTCACGAACAatacttgcctcgttttgaaat
tattgtcatggtgattaactcccagcggttTTATTAAAACTTTTACTATT
AAAACtattctattcataaaaaaaatcatttcatgtctcaggggacataa
tcaccatggtaattgtttggaCACGAGGCAAGTTATGTTAGTGGAAAAAC
AttcaatgaattaaaaaaacgaagttaaaattttattagATTGTtcattt
cgacattttagtttGAATTTCTAATACTTTATGATCACAAGATTTCATAG
GCACATATTCTTACGTCGGTCTTTTTGTATCTTCCAAGGTTTTGATCACC
CAGTTTATCATATTTGTGAGTCAAAAGACTTTTGGCTAGTTTCCAGGTTC
CATTCGCTTCTAATTCATCCATTCTCTTTTGATATCCATAATCTCTCAAG
TAATGATCTCGGGTGGAAAAGATAATGATGGAACCACGCCCCTTCGCCGC
CATTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045535XLOC_045535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073381-exon-scaffold_90-1491911889:289698..290503TCONS_00073381-exon-scaffold_90-1491911889:289698..290503Clytia hemisphaericaexon
TCONS_00073381-exon-scaffold_90-1510915933:289698..290503TCONS_00073381-exon-scaffold_90-1510915933:289698..290503Clytia hemisphaericaexon
TCONS_00073381-exon-scaffold_90-1575043694:289698..290503TCONS_00073381-exon-scaffold_90-1575043694:289698..290503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:289698..290503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0746143	0.211424	0.257015	1.36865	0.933914	9.92607	11.4893	9.47923	7.76321	7.37408	4.64268	2.21703	2.32795	6.5802	10.5991	1.38216	1.29029	1.14498	2.2788	7.09429	6.73241	12.9167	15.6468	2.15702	0.83092	6.19377	4.59566	48.5013	23.1773
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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