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TCONS_00073377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073377
Unique NameTCONS_00073377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073377 ID=TCONS_00073377|Name=TCONS_00073377|organism=Clytia hemisphaerica|type=transcript|length=1222bp
TTAGAATGCGCGATATGAGTTACCTGAGGAAACCCAGGGCAAAAGCACAT
AACATGGCGGGGAAATGGCCGGGAAATAAGGGGGTCAATCTTATGGTTGG
CGTTTCTTTTTCTGCTTTGTTTCAGTGGTTTTAAgtcaatgttttttgtt
ttttttaaagatatatgatagtaattggttatcgaagtaatcaattgatt
attgaagttattgaaattaatcaataacaatcaaagtgcTCGAACANTGT
TTCAGTGGTTTTAAgtcaatgttttttgttttttttaaagatatatgata
gtaattggttatcgaagtaatcaattgaTTATTGAAGTTATTGAAATTAA
TGAATAACAATCAAAGTGCTCAAACAGTTATCAAGTCTtcgaagggttgt
taagaaagtgatcgaatactcacattttttttgaaattttgatactcAAA
TTTgattgttaatcgataagtggtcgccaataatcagatttattgatatt
ggctttttggcaaaaatattttcagggtcttataatatcatgaatagaat
gAACACACTAAAATTTGAGAGGATTTTGTTCAGCGAAATTTAAGAAAAGC
TCCAAAAATTGACTTTCCCTAAGGAAACCCCTAGTAAGCAAATACAAGTt
ggtttacctccagagaccaaacaaTGGAGAGCAACAAAATAATGCACACa
ctttttttgagaattatGGGAAAGGTGTACTGATaaacaaaaatcacaat
cgaatAAATGAAATGTAATTGAACACTATTGAATGATTGCttttcgattg
tcaaacgcaattgCATCTCAATCAAATGGTCAATTCCTAGGTACTGTTAC
AGCCTTTCTAATTCAGATTTATTTGTGTTGGCAAAAAATTCTgggtaagt
aagtaagtaagtactTTAACGTCATCAAAAGCCAAATTTACGTTTCGTCA
GCGTTCATGTTAGTTGGTCTTATGAAACATCCCTCATTTCATTCTGACAC
CATTCTTTGGAGCTGGGAATAATAGGAAGGGTTAGAAAAAATGCCTCcag
gaggggtgtttatttgtAACAAGTGGCTGTAAAGGGGTAGCATCATCAGT
GTAGCTCGACCTCTTCAAAATACTTGGTAAGAAAAAGCTATACCAATTTG
AAAAACCCTAACCGTTGATCATGTACCAAACCTTTGCCAAACACACAAAA
AACCCGCAATCTAGTTTTCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_90:250641..251862

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073377 ID=TCONS_00073377|Name=TCONS_00073377|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_90:250641..251862 (Clytia hemisphaerica)
GTTGAAAACTAGATTGCGGGTTTTTTGTGTGTTTGGCAAAGGTTTGGTAC ATGATCAACGGTTAGGGTTTTTCAAATTGGTATAGCTTTTTCTTACCAAG TATTTTGAAGAGGTCGAGCTACACTGATGATGCTACCCCTTTACAGCCAC TTGTTacaaataaacacccctcctgGAGGCATTTTTTCTAACCCTTCCTA TTATTCCCAGCTCCAAAGAATGGTGTCAGAATGAAATGAGGGATGTTTCA TAAGACCAACTAACATGAACGCTGACGAAACGTAAATTTGGCTTTTGATG ACGTTAAagtacttacttacttacttacccAGAATTTTTTGCCAACACAA ATAAATCTGAATTAGAAAGGCTGTAACAGTACCTAGGAATTGACCATTTG ATTGAGATGcaattgcgtttgacaatcgaaaaGCAATCATTCAATAGTGT TCAATTACATTTCATTTattcgattgtgatttttgtttATCAGTACACCT TTCCCataattctcaaaaaaagtGTGTGCATTATTTTGTTGCTCTCCAtt gtttggtctctggaggtaaaccaACTTGTATTTGCTTACTAGGGGTTTCC TTAGGGAAAGTCAATTTTTGGAGCTTTTCTTAAATTTCGCTGAACAAAAT CCTCTCAAATTTTAGTGTGTTcattctattcatgatattataagaccctg aaaatatttttgccaaaaagccaatatcaataaatctgattattggcgac cacttatcgattaacaatcAAATTTgagtatcaaaatttcaaaaaaaatg tgagtattcgatcactttcttaacaacccttcgaAGACTTGATAACTGTT TGAGCACTTTGATTGTTATTCATTAATTTCAATAACTTCAATAAtcaatt gattacttcgataaccaattactatcatatatctttaaaaaaaacaaaaa acattgacTTAAAACCACTGAAACANTGTTCGAgcactttgattgttatt gattaatttcaataacttcaataatcaattgattacttcgataaccaatt actatcatatatctttaaaaaaaacaaaaaacattgacTTAAAACCACTG AAACAAAGCAGAAAAAGAAACGCCAACCATAAGATTGACCCCCTTATTTC CCGGCCATTTCCCCGCCATGTTATGTGCTTTTGCCCTGGGTTTCCTCAGG TAACTCATATCGCGCATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045531XLOC_045531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073377-exon-scaffold_90-1491911889:250641..251862TCONS_00073377-exon-scaffold_90-1491911889:250641..251862Clytia hemisphaericaexon
TCONS_00073377-exon-scaffold_90-1510915933:250641..251862TCONS_00073377-exon-scaffold_90-1510915933:250641..251862Clytia hemisphaericaexon
TCONS_00073377-exon-scaffold_90-1575043694:250641..251862TCONS_00073377-exon-scaffold_90-1575043694:250641..251862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:250641..251862 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0700449 0.239067 0.594813 1.31905 0.283378 0.268484 0.225134 0.252922 0.449082 0.109669 0.106447 0.466495 0.334458 0.677301 0.338077 0.45389 0.578407 0.377267 0.819052 0.506456 0.92599 1.09009 0.128495 0.0730154 0.413623 0.30203 0.144379 0.256256 0.427594 0.603769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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