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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073362 ID=TCONS_00073362|Name=TCONS_00073362|organism=Clytia hemisphaerica|type=transcript|length=1547bpRun BLAST on NCBI protein sequence of TCONS_00073362-protein >TCONS_00073362-protein ID=TCONS_00073362-protein|Name=TCONS_00073362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MSGTLTTKMAAGNSSATDGAKYHCNYCHADCSGLRVSCAECPDFDACIQCRun BLAST on NCBI transcript from alignment at scaffold_90:196096..241834- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073362 ID=TCONS_00073362|Name=TCONS_00073362|organism=Clytia hemisphaerica|type=transcript|length=45739bp|location=Sequence derived from alignment at scaffold_90:196096..241834- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_90:196096..241834- >TCONS_00073362 ID=TCONS_00073362|Name=TCONS_00073362|organism=Clytia hemisphaerica|type=CDS|length=25365bp|location=Sequence derived from alignment at scaffold_90:196096..241834- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073362 vs. Swiss-Prot (Human)
Match: TAD2B (Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2) HSP 1 Score: 328.561 bits (841), Expect = 1.205e-106 Identity = 177/438 (40.41%), Postives = 265/438 (60.50%), Query Frame = 1
Query: 58 AKYHCNYCHADCSGLRVSCAECPDFDACIQCFASGAEMGNHKRGHDYHLIDNGTFYL----IVKGWTADEEMLLLDAIEQHGLGNWDDISDHVG-TKSPQEAQDHFEEVYLKKNIGKVTLPKSV-SHIPDHASVEG-QLSPTLLKPMESLDLPVAEQQELGYMMFRDDFEREYDNDAENLIKTLVCSRDDDELETALKLQLADMYWRVLHERSRWKKIARDYGLITS------KHRLIASRRKLSKEDREFKDKIRPFAQFVQPQQWEELVNNRIRERELKARIKELTKYRRYGIKKLTGCQEYEDLKTQRERKKENRKRMQVISPPRTTKTSGK-KEFXXXXXXXXXXXXXATXXXXXXXXXMSSDTSFQLLSDKEKHLCATVQLRCSRYMTLKSYLLNEYASSRMKIPHKTKPPHYLTPSLRLALQEFFIQCGWIS 1329
K +C YC A+ S LR C EC D + C +CF++GAE+G+H+R H Y L+D G F L GWT+ EE LLLDAIEQ G GNW+D++ HVG +++PQE +H+ +Y+ N+GK +P ++ + + DH G LSP+L P+ LD+ VAEQQ+LGYM RDD+E EYD DAE LI L + DDD++E LK DMY R L ER R K IARDY L+ + K + A +RK++KE++E + K+RP QF+ +++++L N +E+ L+A+I+EL +YRR GI K+ EYE + +RE++KEN+ ++ + K GK EF++ + + F+LLSD+EK LC+++ L +RY+T+K+ ++ ++ R IP K++ P YL L+ + F + GWIS
Sbjct: 5 GKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLGKACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRELQRYRRNGITKMEESAEYEAARHKREKRKENKN----LAGSKRGKEDGKDSEFAA----------------------IENLPGFELLSDREKVLCSSLNLSPARYVTVKTIIIKDHLQKRQGIPSKSRLPSYLDKVLKKRILNFLTESGWIS 416 The following BLAST results are available for this feature:
BLAST of TCONS_00073362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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