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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073348 ID=TCONS_00073348|Name=TCONS_00073348|organism=Clytia hemisphaerica|type=transcript|length=3047bpRun BLAST on NCBI protein sequence of TCONS_00073348-protein >TCONS_00073348-protein ID=TCONS_00073348-protein|Name=TCONS_00073348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MPMHGTAAPQPGANNKANEGGGGGGGKDSLDPFTRKSSVKKIGKHPKKQQRun BLAST on NCBI transcript from alignment at scaffold_90:16284..52279+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073348 ID=TCONS_00073348|Name=TCONS_00073348|organism=Clytia hemisphaerica|type=transcript|length=35996bp|location=Sequence derived from alignment at scaffold_90:16284..52279+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_90:16284..52279+ >TCONS_00073348 ID=TCONS_00073348|Name=TCONS_00073348|organism=Clytia hemisphaerica|type=CDS|length=18837bp|location=Sequence derived from alignment at scaffold_90:16284..52279+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073348 vs. Swiss-Prot (Human)
Match: 2A5E (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Homo sapiens GN=PPP2R5E PE=1 SV=1) HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0 Identity = 317/420 (75.48%), Postives = 365/420 (86.90%), Query Frame = 3
Query: 237 DSLDPFTRKSSVKKIGKHPKKQQGSSRFRNNPHVEIQPLPLLKDSPAQERQELMIKKIQLCCNMFDFMDPVSDLRGKEVKRSTLNELVEYINAETGVLTEPVYPEIIRMVAINCFRTLPPSINPDFDPEEDEPTLECSWPHLQIVFEFFLRYLESHEFQPTIAKKYIDQKFVLQLLELFDSEDPREREFLKTVLHRIYGKFLGLRAYIRKQINHIFLRFIYETEHFNGVGELLEILGSIINGFALPLKAEHKQFLLKVLIPLHKVRCLSLYHAQLAYCVVQFLEKDPALTEPVVMGLIKYWPKTSSQKEVMFLGELEEVLDSIEAAQFQKIMEPFFKKIAKCVSSPHFQVAERALYYWNNEYILTLIQENSNVILPIMFSCLYRISKDHWNQTIVALVYNVLKAFMEMNGKLFDELTSSY 1496
D +D F+RKS V+K + + R + P +E+ PLPLLKD P+ E+ EL +KK+Q CC +FDFMD +SDL+ KE KRSTLNELV+YI G LTE YPE++RMV+ N FRTLPPS + +FDPEEDEPTLE SWPHLQ+V+EFF+R+LES EFQP+IAKKYIDQKFVLQLLELFDSEDPRER++LKTVLHRIYGKFLGLRA+IRKQIN+IFLRF+YETEHFNGV ELLEILGSIINGFALPLKAEHKQFL+KVLIPLH VR LSL+HAQLAYC+VQFLEKDP+LTEPV+ GL+K+WPKT SQKEVMFLGELEE+LD IE +QF KI EP FK+IAKCVSSPHFQVAERALYYWNNEYI++LI+ENSNVILPIMFS LYRISK+HWN IVALVYNVLKAFMEMN +FDELT++Y
Sbjct: 12 DKVDGFSRKS-VRKARQKRSQSSSQFRSQGKP-IELTPLPLLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDSEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATY 429 The following BLAST results are available for this feature:
BLAST of TCONS_00073348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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