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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=transcript|length=2209bp
CGCACTGTTATGGATTCAAGTCCAACtgtaaatatatttcaaagCTTATA
AGAGAAAATGACTGTATCTATTTGACCGAAACTTGGCTTCTTAAATCAGA
GGAGCACTTCTTACATGAATTTGAGTCAGAGTATAAAATTATAACCGTTC
AAGCAGAAAAACGAAACAGCGGTAGACCTTTTGGAGGAACAATTCTACTc
ctgaaaaataataaattctcTCAGACTAATACAATACTACAAGAAATGAA
CTACACTACAATCAATACACACCTTGGTAACACATCAATCACCATCTCAG
GAGTCTACTTACCAACATCAAGTAATACAGACTATATAGAAACCTACAAA
ACCCAATTGTCAACTTTGATGGGAATCCATACTCAATTTGCTTCAACCTC
TGAATCTATCATATTAGGTGATTTCCAGTGCTTTCCAAATATCCCAAACT
CACCAAGGACTGCTAAACTCAACAccctttcaaaatttcttacAAACTTT
ATAAACGAAATGGATCTGATTGCAATTGATATCATGAACGGAACAGGCCC
ATCATACACATATCATCACCATACCCTACCAAATAAATCGTACATTGATC
ACATTCTTGTTTCACAAGACATTGCAAATATGACATCCGAGACTGCGGTA
ATAGAACCAGCGCCTGAGAATACCAGTGACCATCTCCCAGTTTCCACTTC
CTTATTTCTCGAGAACACATCAGATCATCATCAACAGCAAACAACACCTC
CGAGATTGTCTCAAATACCCAACTACCTTTGGTCCAATGAAAGATTTCTG
GAGCTCTACAGAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAAGCGA
AAATATTAACAAAGATCTAGACACTCTCTCTGATCTACTTAAAGAATGTG
CTAGTAAAAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAACCA
AAACAGTGGTGGAATCAGGATCTAACAAGGTGCAGAAATACACTCAAACA
AACCTTCAATATATGGAGAGACAATGGTTTCGAAAAGGATATGAATTCAG
TGTATTATGCCCGATATGTGTTTGCCAGGAAAAGATTTCGTTTATCTCGT
GCGCCATTACAAAAACCAAGCGACAGCCAAATACTACGTAAACATTGATc
ggttaaagaaaataaacccTAGAAACTATTGGAAAAAGATTAGACTTAAC
AAAACATCAGCAGAAAAACTATACACAATTAACAACAAAACGTCAACAGA
GGAGATCACAGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAACGAAC
CTAGAGTCCAACANGACATCTCACAAATCCTGGACAATAAAAAACTCAGT
CTCCTAAAGGAACTTATCGAAAACAACAACACTAGACACTACGCCCTATA
CGTCACCACACTGGGTAAAGATGATAGAGGCTTCTCGACAATCGAAGACC
TCAACAAGACATGtgagaaatatgaaatagaTTTATTCGAAagctttatt
aaaaaacaatcaATCAAGGTGATTGACTCTAATATGCCTGGTGAAGACTT
GGATCAACTCCGTCTGTGTGTCGAAAACTGGCACAAGTATGAAAATAGAT
TGCGATTCAGAGAAATCCTTGAGGAGTCAATCAAGCGCTGAATCTTAGCT
TCTTAAATCCCTCTATCATTTAAGTAATCTAGCTAATCTACCAAATTTTA
TCTTAATTTTATCCCTTTCCTTTCTACGCTAAGAAACAACACTGGTTCTT
CCCAAGGACTTCTCTTGGATCTACAATTCTGTATATAAGATATAAGATAG
TTTAATTACGACTTTAATAACTATACTTCCATCCTGGCCTTGTGAGATAA
TCACCCATTAATTCATTATAATCAATCTCCTCAATTTTTATTCTAAATCT
ATCTTCCAgactttgtttgttttgattttgcaggATGAGATTCCCACGCT
ACACTTTTTTTGCTAACTCATCATTTTGTCAGTTTTCCTTTTGTTCTCGT
GGGTGATTCCCCACTGCCTTTTGGATTTTATAAGGGCGGCAATTTTGGAA
GATTCCCATTCGTCTCGAGCTCCGCGATCTATATATATATACCACCGCCC
TTCTCCCTCAGTCGACTacctcaatatttttattttaatcaacaaaaaaa
gaaaaaacttttttaaatgtacataactcaagcatatattttaaaaaaaa
agagagaga Run BLAST on NCBI protein sequence of TCONS_00073338-protein >TCONS_00073338-protein ID=TCONS_00073338-protein|Name=TCONS_00073338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
HCYGFKSNCKYISKLIRENDCIYLTETWLLKSEEHFLHEFESEYKIITVQ
AEKRNSGRPFGGTILLLKNNKFSQTNTILQEMNYTTINTHLGNTSITISG
VYLPTSSNTDYIETYKTQLSTLMGIHTQFASTSESIILGDFQCFPNIPNS
PRTAKLNTLSKFLTNFINEMDLIAIDIMNGTGPSYTYHHHTLPNKSYIDH
ILVSQDIANMTSETAVIEPAPENTSDHLPVSTSLFLENTSDHHQQQTTPP
RLSQIPNYLWSNERFLELYRKKVAEAMPLKSSENINKDLDTLSDLLKECA
SKSYTEIESNFRKVEPKQWWNQDLTRCRNTLKQTFNIWRDNGFEKDMNSV
YYARYVFARKRFRLSRAPLQKPSDSQILRKH Run BLAST on NCBI transcript from alignment at scaffold_9:207654..209862 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at scaffold_9:207654..209862 (Clytia hemisphaerica)
tctctctctttttttttaaaatatatgcttgagttatgtacatttaaaaa
agttttttctttttttgttgattaaaataaaaatattgaggtAGTCGACT
GAGGGAGAAGGGCGGTGGTATATATATATAGATCGCGGAGCTCGAGACGA
ATGGGAATCTTCCAAAATTGCCGCCCTTATAAAATCCAAAAGGCAGTGGG
GAATCACCCACGAGAACAAAAGGAAAACTGACAAAATGATGAGTTAGCAA
AAAAAGTGTAGCGTGGGAATCTCATcctgcaaaatcaaaacaaacaaagt
cTGGAAGATAGATTTAGAATAAAAATTGAGGAGATTGATTATAATGAATT
AATGGGTGATTATCTCACAAGGCCAGGATGGAAGTATAGTTATTAAAGTC
GTAATTAAACTATCTTATATCTTATATACAGAATTGTAGATCCAAGAGAA
GTCCTTGGGAAGAACCAGTGTTGTTTCTTAGCGTAGAAAGGAAAGGGATA
AAATTAAGATAAAATTTGGTAGATTAGCTAGATTACTTAAATGATAGAGG
GATTTAAGAAGCTAAGATTCAGCGCTTGATTGACTCCTCAAGGATTTCTC
TGAATCGCAATCTATTTTCATACTTGTGCCAGTTTTCGACACACAGACGG
AGTTGATCCAAGTCTTCACCAGGCATATTAGAGTCAATCACCTTGATtga
ttgttttttaataaagctTTCGAATAAAtctatttcatatttctcaCATG
TCTTGTTGAGGTCTTCGATTGTCGAGAAGCCTCTATCATCTTTACCCAGT
GTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTTGTTTTCGATAAGTTC
CTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTTGTGAGATGTCNTGTT
GGACTCTAGGTTCGTTCAAAACGGATTGGAAATGATGGCCAAATTCTTCT
GTGATCTCCTCTGTTGACGTTTTGTTGTTAATTGTGTATAGTTTTTCTGC
TGATGTTTTGTTAAGTCTAATCTTTTTCCAATAGTTTCTAgggtttattt
tctttaaccgATCAATGTTTACGTAGTATTTGGCTGTCGCTTGGTTTTTG
TAATGGCGCACGAGATAAACGAAATCTTTTCCTGGCAAACACATATCGGG
CATAATACACTGAATTCATATCCTTTTCGAAACCATTGTCTCTCCATATA
TTGAAGGTTTGTTTGAGTGTATTTCTGCACCTTGTTAGATCCTGATTCCA
CCACTGTTTTGGTTCGACTTTCCGGAAATTGCTTTCTATCTCTGTATAGC
TTTTACTAGCACATTCTTTAAGTAGATCAGAGAGAGTGTCTAGATCTTTG
TTAATATTTTCGCTTGATTTGAGTGGCATTGCCTCAGCAACCTTTTTTCT
GTAGAGCTCCAGAAATCTTTCATTGGACCAAAGGTAGTTGGGTATTTGAG
ACAATCTCGGAGGTGTTGTTTGCTGTTGATGATGATCTGATGTGTTCTCG
AGAAATAAGGAAGTGGAAACTGGGAGATGGTCACTGGTATTCTCAGGCGC
TGGTTCTATTACCGCAGTCTCGGATGTCATATTTGCAATGTCTTGTGAAA
CAAGAATGTGATCAATGTACGATTTATTTGGTAGGGTATGGTGATGATAT
GTGTATGATGGGCCTGTTCCGTTCATGATATCAATTGCAATCAGATCCAT
TTCGTTTATAAAGTTTgtaagaaattttgaaagggTGTTGAGTTTAGCAG
TCCTTGGTGAGTTTGGGATATTTGGAAAGCACTGGAAATCACCTAATATG
ATAGATTCAGAGGTTGAAGCAAATTGAGTATGGATTCCCATCAAAGTTGA
CAATTGGGTTTTGTAGGTTTCTATATAGTCTGTATTACTTGATGTTGGTA
AGTAGACTCCTGAGATGGTGATTGATGTGTTACCAAGGTGTGTATTGATT
GTAGTGTAGTTCATTTCTTGTAGTATTGTATTAGTCTGAgagaatttatt
atttttcaggAGTAGAATTGTTCCTCCAAAAGGTCTACCGCTGTTTCGTT
TTTCTGCTTGAACGGTTATAATTTTATACTCTGACTCAAATTCATGTAAG
AAGTGCTCCTCTGATTTAAGAAGCCAAGTTTCGGTCAAATAGATACAGTC
ATTTTCTCTTATAAGctttgaaatatatttacaGTTGGACTTGAATCCAT
AACAGTGCG Coding sequence (CDS) from alignment at scaffold_9:207654..209862 >TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_9:207654..209862 (Clytia hemisphaerica)
TCAATGTTTACGTAGTATTTGGCTGTCGCTTGGTTTTTGTAATGGCGCAC
GAGATAAACGAAATCTTTTCCTGGCAAACACATATCGGGCATAATACACT
GAATTCATATCCTTTTCGAAACCATTGTCTCTCCATATATTGAAGGTTTG
TTTGAGTGTATTTCTGCACCTTGTTAGATCCTGATTCCACCACTGTTTTG
GTTCGACTTTCCGGAAATTGCTTTCTATCTCTGTATAGCTTTTACTAGCA
CATTCTTTAAGTAGATCAGAGAGAGTGTCTAGATCTTTGTTAATATTTTC
GCTTGATTTGAGTGGCATTGCCTCAGCAACCTTTTTTCTGTAGAGCTCCA
GAAATCTTTCATTGGACCAAAGGTAGTTGGGTATTTGAGACAATCTCGGA
GGTGTTGTTTGCTGTTGATGATGATCTGATGTGTTCTCGAGAAATAAGGA
AGTGGAAACTGGGAGATGGTCACTGGTATTCTCAGGCGCTGGTTCTATTA
CCGCAGTCTCGGATGTCATATTTGCAATGTCTTGTGAAACAAGAATGTGA
TCAATGTACGATTTATTTGGTAGGGTATGGTGATGATATGTGTATGATGG
GCCTGTTCCGTTCATGATATCAATTGCAATCAGATCCATTTCGTTTATAA
AGTTTgtaagaaattttgaaagggTGTTGAGTTTAGCAGTCCTTGGTGAG
TTTGGGATATTTGGAAAGCACTGGAAATCACCTAATATGATAGATTCAGA
GGTTGAAGCAAATTGAGTATGGATTCCCATCAAAGTTGACAATTGGGTTT
TGTAGGTTTCTATATAGTCTGTATTACTTGATGTTGGTAAGTAGACTCCT
GAGATGGTGATTGATGTGTTACCAAGGTGTGTATTGATTGTAGTGTAGTT
CATTTCTTGTAGTATTGTATTAGTCTGAgagaatttattatttttcaggA
GTAGAATTGTTCCTCCAAAAGGTCTACCGCTGTTTCGTTTTTCTGCTTGA
ACGGTTATAATTTTATACTCTGACTCAAATTCATGTAAGAAGTGCTCCTC
TGATTTAAGAAGCCAAGTTTCGGTCAAATAGATACAGTCATTTTCTCTTA
TAAGctttgaaatatatttacaGTTGGACTTGAATCCATAACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073338-exon-scaffold_9-1491911889:207654..209862 | TCONS_00073338-exon-scaffold_9-1491911889:207654..209862 | Clytia hemisphaerica | exon |
| TCONS_00073338-exon-scaffold_9-1510915933:207654..209862 | TCONS_00073338-exon-scaffold_9-1510915933:207654..209862 | Clytia hemisphaerica | exon |
| TCONS_00073338-exon-scaffold_9-1575043694:207654..209862 | TCONS_00073338-exon-scaffold_9-1575043694:207654..209862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_9 | supercontig | scaffold_9:207654..209862 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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