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TCONS_00073338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073338
Unique NameTCONS_00073338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=transcript|length=2209bp
CGCACTGTTATGGATTCAAGTCCAACtgtaaatatatttcaaagCTTATA
AGAGAAAATGACTGTATCTATTTGACCGAAACTTGGCTTCTTAAATCAGA
GGAGCACTTCTTACATGAATTTGAGTCAGAGTATAAAATTATAACCGTTC
AAGCAGAAAAACGAAACAGCGGTAGACCTTTTGGAGGAACAATTCTACTc
ctgaaaaataataaattctcTCAGACTAATACAATACTACAAGAAATGAA
CTACACTACAATCAATACACACCTTGGTAACACATCAATCACCATCTCAG
GAGTCTACTTACCAACATCAAGTAATACAGACTATATAGAAACCTACAAA
ACCCAATTGTCAACTTTGATGGGAATCCATACTCAATTTGCTTCAACCTC
TGAATCTATCATATTAGGTGATTTCCAGTGCTTTCCAAATATCCCAAACT
CACCAAGGACTGCTAAACTCAACAccctttcaaaatttcttacAAACTTT
ATAAACGAAATGGATCTGATTGCAATTGATATCATGAACGGAACAGGCCC
ATCATACACATATCATCACCATACCCTACCAAATAAATCGTACATTGATC
ACATTCTTGTTTCACAAGACATTGCAAATATGACATCCGAGACTGCGGTA
ATAGAACCAGCGCCTGAGAATACCAGTGACCATCTCCCAGTTTCCACTTC
CTTATTTCTCGAGAACACATCAGATCATCATCAACAGCAAACAACACCTC
CGAGATTGTCTCAAATACCCAACTACCTTTGGTCCAATGAAAGATTTCTG
GAGCTCTACAGAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAAGCGA
AAATATTAACAAAGATCTAGACACTCTCTCTGATCTACTTAAAGAATGTG
CTAGTAAAAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAACCA
AAACAGTGGTGGAATCAGGATCTAACAAGGTGCAGAAATACACTCAAACA
AACCTTCAATATATGGAGAGACAATGGTTTCGAAAAGGATATGAATTCAG
TGTATTATGCCCGATATGTGTTTGCCAGGAAAAGATTTCGTTTATCTCGT
GCGCCATTACAAAAACCAAGCGACAGCCAAATACTACGTAAACATTGATc
ggttaaagaaaataaacccTAGAAACTATTGGAAAAAGATTAGACTTAAC
AAAACATCAGCAGAAAAACTATACACAATTAACAACAAAACGTCAACAGA
GGAGATCACAGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAACGAAC
CTAGAGTCCAACANGACATCTCACAAATCCTGGACAATAAAAAACTCAGT
CTCCTAAAGGAACTTATCGAAAACAACAACACTAGACACTACGCCCTATA
CGTCACCACACTGGGTAAAGATGATAGAGGCTTCTCGACAATCGAAGACC
TCAACAAGACATGtgagaaatatgaaatagaTTTATTCGAAagctttatt
aaaaaacaatcaATCAAGGTGATTGACTCTAATATGCCTGGTGAAGACTT
GGATCAACTCCGTCTGTGTGTCGAAAACTGGCACAAGTATGAAAATAGAT
TGCGATTCAGAGAAATCCTTGAGGAGTCAATCAAGCGCTGAATCTTAGCT
TCTTAAATCCCTCTATCATTTAAGTAATCTAGCTAATCTACCAAATTTTA
TCTTAATTTTATCCCTTTCCTTTCTACGCTAAGAAACAACACTGGTTCTT
CCCAAGGACTTCTCTTGGATCTACAATTCTGTATATAAGATATAAGATAG
TTTAATTACGACTTTAATAACTATACTTCCATCCTGGCCTTGTGAGATAA
TCACCCATTAATTCATTATAATCAATCTCCTCAATTTTTATTCTAAATCT
ATCTTCCAgactttgtttgttttgattttgcaggATGAGATTCCCACGCT
ACACTTTTTTTGCTAACTCATCATTTTGTCAGTTTTCCTTTTGTTCTCGT
GGGTGATTCCCCACTGCCTTTTGGATTTTATAAGGGCGGCAATTTTGGAA
GATTCCCATTCGTCTCGAGCTCCGCGATCTATATATATATACCACCGCCC
TTCTCCCTCAGTCGACTacctcaatatttttattttaatcaacaaaaaaa
gaaaaaacttttttaaatgtacataactcaagcatatattttaaaaaaaa
agagagaga
Run BLAST on NCBI

protein sequence of TCONS_00073338-protein

>TCONS_00073338-protein ID=TCONS_00073338-protein|Name=TCONS_00073338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
HCYGFKSNCKYISKLIRENDCIYLTETWLLKSEEHFLHEFESEYKIITVQ
AEKRNSGRPFGGTILLLKNNKFSQTNTILQEMNYTTINTHLGNTSITISG
VYLPTSSNTDYIETYKTQLSTLMGIHTQFASTSESIILGDFQCFPNIPNS
PRTAKLNTLSKFLTNFINEMDLIAIDIMNGTGPSYTYHHHTLPNKSYIDH
ILVSQDIANMTSETAVIEPAPENTSDHLPVSTSLFLENTSDHHQQQTTPP
RLSQIPNYLWSNERFLELYRKKVAEAMPLKSSENINKDLDTLSDLLKECA
SKSYTEIESNFRKVEPKQWWNQDLTRCRNTLKQTFNIWRDNGFEKDMNSV
YYARYVFARKRFRLSRAPLQKPSDSQILRKH
Run BLAST on NCBI

transcript from alignment at scaffold_9:207654..209862

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at scaffold_9:207654..209862 (Clytia hemisphaerica)
tctctctctttttttttaaaatatatgcttgagttatgtacatttaaaaa agttttttctttttttgttgattaaaataaaaatattgaggtAGTCGACT GAGGGAGAAGGGCGGTGGTATATATATATAGATCGCGGAGCTCGAGACGA ATGGGAATCTTCCAAAATTGCCGCCCTTATAAAATCCAAAAGGCAGTGGG GAATCACCCACGAGAACAAAAGGAAAACTGACAAAATGATGAGTTAGCAA AAAAAGTGTAGCGTGGGAATCTCATcctgcaaaatcaaaacaaacaaagt cTGGAAGATAGATTTAGAATAAAAATTGAGGAGATTGATTATAATGAATT AATGGGTGATTATCTCACAAGGCCAGGATGGAAGTATAGTTATTAAAGTC GTAATTAAACTATCTTATATCTTATATACAGAATTGTAGATCCAAGAGAA GTCCTTGGGAAGAACCAGTGTTGTTTCTTAGCGTAGAAAGGAAAGGGATA AAATTAAGATAAAATTTGGTAGATTAGCTAGATTACTTAAATGATAGAGG GATTTAAGAAGCTAAGATTCAGCGCTTGATTGACTCCTCAAGGATTTCTC TGAATCGCAATCTATTTTCATACTTGTGCCAGTTTTCGACACACAGACGG AGTTGATCCAAGTCTTCACCAGGCATATTAGAGTCAATCACCTTGATtga ttgttttttaataaagctTTCGAATAAAtctatttcatatttctcaCATG TCTTGTTGAGGTCTTCGATTGTCGAGAAGCCTCTATCATCTTTACCCAGT GTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTTGTTTTCGATAAGTTC CTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTTGTGAGATGTCNTGTT GGACTCTAGGTTCGTTCAAAACGGATTGGAAATGATGGCCAAATTCTTCT GTGATCTCCTCTGTTGACGTTTTGTTGTTAATTGTGTATAGTTTTTCTGC TGATGTTTTGTTAAGTCTAATCTTTTTCCAATAGTTTCTAgggtttattt tctttaaccgATCAATGTTTACGTAGTATTTGGCTGTCGCTTGGTTTTTG TAATGGCGCACGAGATAAACGAAATCTTTTCCTGGCAAACACATATCGGG CATAATACACTGAATTCATATCCTTTTCGAAACCATTGTCTCTCCATATA TTGAAGGTTTGTTTGAGTGTATTTCTGCACCTTGTTAGATCCTGATTCCA CCACTGTTTTGGTTCGACTTTCCGGAAATTGCTTTCTATCTCTGTATAGC TTTTACTAGCACATTCTTTAAGTAGATCAGAGAGAGTGTCTAGATCTTTG TTAATATTTTCGCTTGATTTGAGTGGCATTGCCTCAGCAACCTTTTTTCT GTAGAGCTCCAGAAATCTTTCATTGGACCAAAGGTAGTTGGGTATTTGAG ACAATCTCGGAGGTGTTGTTTGCTGTTGATGATGATCTGATGTGTTCTCG AGAAATAAGGAAGTGGAAACTGGGAGATGGTCACTGGTATTCTCAGGCGC TGGTTCTATTACCGCAGTCTCGGATGTCATATTTGCAATGTCTTGTGAAA CAAGAATGTGATCAATGTACGATTTATTTGGTAGGGTATGGTGATGATAT GTGTATGATGGGCCTGTTCCGTTCATGATATCAATTGCAATCAGATCCAT TTCGTTTATAAAGTTTgtaagaaattttgaaagggTGTTGAGTTTAGCAG TCCTTGGTGAGTTTGGGATATTTGGAAAGCACTGGAAATCACCTAATATG ATAGATTCAGAGGTTGAAGCAAATTGAGTATGGATTCCCATCAAAGTTGA CAATTGGGTTTTGTAGGTTTCTATATAGTCTGTATTACTTGATGTTGGTA AGTAGACTCCTGAGATGGTGATTGATGTGTTACCAAGGTGTGTATTGATT GTAGTGTAGTTCATTTCTTGTAGTATTGTATTAGTCTGAgagaatttatt atttttcaggAGTAGAATTGTTCCTCCAAAAGGTCTACCGCTGTTTCGTT TTTCTGCTTGAACGGTTATAATTTTATACTCTGACTCAAATTCATGTAAG AAGTGCTCCTCTGATTTAAGAAGCCAAGTTTCGGTCAAATAGATACAGTC ATTTTCTCTTATAAGctttgaaatatatttacaGTTGGACTTGAATCCAT AACAGTGCG

Coding sequence (CDS) from alignment at scaffold_9:207654..209862

>TCONS_00073338 ID=TCONS_00073338|Name=TCONS_00073338|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_9:207654..209862 (Clytia hemisphaerica)
TCAATGTTTACGTAGTATTTGGCTGTCGCTTGGTTTTTGTAATGGCGCAC
GAGATAAACGAAATCTTTTCCTGGCAAACACATATCGGGCATAATACACT
GAATTCATATCCTTTTCGAAACCATTGTCTCTCCATATATTGAAGGTTTG
TTTGAGTGTATTTCTGCACCTTGTTAGATCCTGATTCCACCACTGTTTTG
GTTCGACTTTCCGGAAATTGCTTTCTATCTCTGTATAGCTTTTACTAGCA
CATTCTTTAAGTAGATCAGAGAGAGTGTCTAGATCTTTGTTAATATTTTC
GCTTGATTTGAGTGGCATTGCCTCAGCAACCTTTTTTCTGTAGAGCTCCA
GAAATCTTTCATTGGACCAAAGGTAGTTGGGTATTTGAGACAATCTCGGA
GGTGTTGTTTGCTGTTGATGATGATCTGATGTGTTCTCGAGAAATAAGGA
AGTGGAAACTGGGAGATGGTCACTGGTATTCTCAGGCGCTGGTTCTATTA
CCGCAGTCTCGGATGTCATATTTGCAATGTCTTGTGAAACAAGAATGTGA
TCAATGTACGATTTATTTGGTAGGGTATGGTGATGATATGTGTATGATGG
GCCTGTTCCGTTCATGATATCAATTGCAATCAGATCCATTTCGTTTATAA
AGTTTgtaagaaattttgaaagggTGTTGAGTTTAGCAGTCCTTGGTGAG
TTTGGGATATTTGGAAAGCACTGGAAATCACCTAATATGATAGATTCAGA
GGTTGAAGCAAATTGAGTATGGATTCCCATCAAAGTTGACAATTGGGTTT
TGTAGGTTTCTATATAGTCTGTATTACTTGATGTTGGTAAGTAGACTCCT
GAGATGGTGATTGATGTGTTACCAAGGTGTGTATTGATTGTAGTGTAGTT
CATTTCTTGTAGTATTGTATTAGTCTGAgagaatttattatttttcaggA
GTAGAATTGTTCCTCCAAAAGGTCTACCGCTGTTTCGTTTTTCTGCTTGA
ACGGTTATAATTTTATACTCTGACTCAAATTCATGTAAGAAGTGCTCCTC
TGATTTAAGAAGCCAAGTTTCGGTCAAATAGATACAGTCATTTTCTCTTA
TAAGctttgaaatatatttacaGTTGGACTTGAATCCATAACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045502XLOC_045502Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073338-proteinTCONS_00073338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073338-exon-scaffold_9-1491911889:207654..209862TCONS_00073338-exon-scaffold_9-1491911889:207654..209862Clytia hemisphaericaexon
TCONS_00073338-exon-scaffold_9-1510915933:207654..209862TCONS_00073338-exon-scaffold_9-1510915933:207654..209862Clytia hemisphaericaexon
TCONS_00073338-exon-scaffold_9-1575043694:207654..209862TCONS_00073338-exon-scaffold_9-1575043694:207654..209862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:207654..209862 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174285 0.17771 0.294296 0.0962143 0.659005 0.932349 0.966 0.771993 0.308087 0.748519 0.49733 0.441773 0.302174 0.539708 0.348003 0.439955 0.348944 0.176864 0.508285 0.60125 0.792469 0.654595 0.411623 0.44136 0.760535 1.5998 0.530914 0.529174 0.268099 0.28681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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