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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073335 ID=TCONS_00073335|Name=TCONS_00073335|organism=Clytia hemisphaerica|type=transcript|length=1348bp
tgaAGAAAAtaggtcgatttccgcaattccgaaataccgtacgccctcCA
CAATGTAGAAGATTTATGGCGCTTTTTAGCCTGTTTAAGCCTTGATTTGC
GAAAAACATTTCTTCGTCAAATTCgagaaagtaaatgtcgtaaatttcga
GATTTTTTGACCTCACGAAAATTTGTACACCTAAAGTATTCTGGCCACGA
TAGTTTATTCTTTTTTATCTGAAATAGTCAATcggagaaaagaaaaacat
ttNCgagaaagtaaatgtcgtaaatttcgaGATTTTTTGACCTCACGAaa
atttgtacgcctaaagtattctgGCCACGATAGTATATTCTTTTTTATCT
GAAATAGTCAAtcagagaaaagaaaaacattcaatttttgtgtttctttt
ttaaatataatcgATATTGAATTGGGCGCATGGCGTTCTAAAATACAGGC
CTAGTAAACATGTATCCGCGGCGATTTTACGAAGGCCACggaattttcat
aattttcaaaaaaagtgcgTTATCAAAAGGCTGTCGAACCATGAACAGTC
TTAGTAATGAAGAGAAGAAATTTGGAACCATCAGAGGAACATTATGAAAA
CCTACAGCTTTCCGAACAAAGCGAAGTATGCAAGTGGATCAAATCAATTC
CGTTTTGGGAGGAAGATGAAATTGAAGCGATGGTAGTTCATGTTGTCTGC
GAAAAACACTGGCCCGTTGGCTTCTTCGAAAAGAAAGGGGACCGTGAAAA
AATGCGACCCGTCCACCCTCCGTCAGTAAAGAAATGCTCGATCCCAACTC
CTCCTACAAAAGAAAGACCGACAAAGAAATCATCGTTTGAGACTAAGACG
CACAAAGAAGATCAACTTGACAAGTTCAAATTGATGGACGCAGTCAATTG
TAAATCCTTTCTTTAAAAGTCCAATCTATGTAATAAAATGGAGTTCCAAA
AAGCCATTTGATGGAATGCGGTCTTCAAACGTTCCTTCTGTATGATCAAT
GCCTTCACGGGACATTTGTAGTAAACTGACAGTTAAGCCAGTGAGTACCA
GGGCTATATATCATAAAATAACATCCAGATAAAAACATCGATGAATTGAA
TGTGGTTGTGAAagtatttggattaaaaaatccGACGAAATAAGCAACAT
TCATATCTAGAGCATTTTTTATTGCTTTCAATTTTAAATCTCGCGGCATT
AAAGTTCAGGGTATTGTTACATTAAAAAGCAACGGCTTTCTGccatattt
ttcattatttttttctaaatactgTAATAGCAAATAGACATTAGTACCGT
CCGTTGTCCGATAAATAGCGAGCCTATGGtcgaaatttggatttcttg Run BLAST on NCBI protein sequence of TCONS_00073335-protein >TCONS_00073335-protein ID=TCONS_00073335-protein|Name=TCONS_00073335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MKRRNLEPSEEHYENLQLSEQSEVCKWIKSIPFWEEDEIEAMVVHVVCEK
HWPVGFFEKKGDREKMRPVHPPSVKKCSIPTPPTKERPTKKSSFETKTHK
EDQLDKFKLMDAVNCKSFL Run BLAST on NCBI transcript from alignment at scaffold_9:165259..166606 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073335 ID=TCONS_00073335|Name=TCONS_00073335|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at scaffold_9:165259..166606 (Clytia hemisphaerica)
caagaaatccaaatttcgaCCATAGGCTCGCTATTTATCGGACAACGGAC
GGTACTAATGTCTATTTGCTATTAcagtatttagaaaaaaataatgaaaa
atatggCAGAAAGCCGTTGCTTTTTAATGTAACAATACCCTGAACTTTAA
TGCCGCGAGATTTAAAATTGAAAGCAATAAAAAATGCTCTAGATATGAAT
GTTGCTTATTTCGTCggattttttaatccaaatactTTCACAACCACATT
CAATTCATCGATGTTTTTATCTGGATGTTATTTTATGATATATAGCCCTG
GTACTCACTGGCTTAACTGTCAGTTTACTACAAATGTCCCGTGAAGGCAT
TGATCATACAGAAGGAACGTTTGAAGACCGCATTCCATCAAATGGCTTTT
TGGAACTCCATTTTATTACATAGATTGGACTTTTAAAGAAAGGATTTACA
ATTGACTGCGTCCATCAATTTGAACTTGTCAAGTTGATCTTCTTTGTGCG
TCTTAGTCTCAAACGATGATTTCTTTGTCGGTCTTTCTTTTGTAGGAGGA
GTTGGGATCGAGCATTTCTTTACTGACGGAGGGTGGACGGGTCGCATTTT
TTCACGGTCCCCTTTCTTTTCGAAGAAGCCAACGGGCCAGTGTTTTTCGC
AGACAACATGAACTACCATCGCTTCAATTTCATCTTCCTCCCAAAACGGA
ATTGATTTGATCCACTTGCATACTTCGCTTTGTTCGGAAAGCTGTAGGTT
TTCATAATGTTCCTCTGATGGTTCCAAATTTCTTCTCTTCATTACTAAGA
CTGTTCATGGTTCGACAGCCTTTTGATAAcgcactttttttgaaaattat
gaaaattccGTGGCCTTCGTAAAATCGCCGCGGATACATGTTTACTAGGC
CTGTATTTTAGAACGCCATGCGCCCAATTCAATATcgattatatttaaaa
aagaaacacaaaaattgaatgtttttcttttctctgaTTGACTATTTCAG
ATAAAAAAGAATATACTATCGTGGCcagaatactttaggcgtacaaattt
TCGTGAGGTCAAAAAATCtcgaaatttacgacatttactttctcGNaaat
gtttttcttttctccgATTGACTATTTCAGATAAAAAAGAATAAACTATC
GTGGCCAGAATACTTTAGGTGTACAAATTTTCGTGAGGTCAAAAAATCtc
gaaatttacgacatttactttctcGAATTTGACGAAGAAATGTTTTTCGC
AAATCAAGGCTTAAACAGGCTAAAAAGCGCCATAAATCTTCTACATTGTG
gagggcgtacggtatttcggaattgcggaaatcgacctaTTTTCTtca Coding sequence (CDS) from alignment at scaffold_9:165259..166606 >TCONS_00073335 ID=TCONS_00073335|Name=TCONS_00073335|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_9:165259..166606 (Clytia hemisphaerica)
TTAAAGAAAGGATTTACAATTGACTGCGTCCATCAATTTGAACTTGTCAA
GTTGATCTTCTTTGTGCGTCTTAGTCTCAAACGATGATTTCTTTGTCGGT
CTTTCTTTTGTAGGAGGAGTTGGGATCGAGCATTTCTTTACTGACGGAGG
GTGGACGGGTCGCATTTTTTCACGGTCCCCTTTCTTTTCGAAGAAGCCAA
CGGGCCAGTGTTTTTCGCAGACAACATGAACTACCATCGCTTCAATTTCA
TCTTCCTCCCAAAACGGAATTGATTTGATCCACTTGCATACTTCGCTTTG
TTCGGAAAGCTGTAGGTTTTCATAATGTTCCTCTGATGGTTCCAAATTTC
TTCTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073335-exon-scaffold_9-1491911889:165259..166606 | TCONS_00073335-exon-scaffold_9-1491911889:165259..166606 | Clytia hemisphaerica | exon |
| TCONS_00073335-exon-scaffold_9-1510915933:165259..166606 | TCONS_00073335-exon-scaffold_9-1510915933:165259..166606 | Clytia hemisphaerica | exon |
| TCONS_00073335-exon-scaffold_9-1575043694:165259..166606 | TCONS_00073335-exon-scaffold_9-1575043694:165259..166606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:165259..166606 . |
Blast
The following BLAST results are available for this feature:
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