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TCONS_00073331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073331
Unique NameTCONS_00073331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073331 ID=TCONS_00073331|Name=TCONS_00073331|organism=Clytia hemisphaerica|type=transcript|length=925bp
ATTTCTTCTTCTGGTAATAAGGAACAGAGGATCAGTTGCTAGAATTATTT
CTTTcatgataaaataaaaatttcttcctccatgtttcactgatttttgt
atTCCATTTTCCAACAATGCTGAGATAGCTTCATACCAATCCTTGTACGA
AGTGAAAAGATTTGATCCTGTTTCTTTGCCAAGAAAGTACTTATTAGCAC
CCCAGAGCAGTTTATCTTCTTTGTTAGTAGCGGATGATGGTAGCTGCACA
ATTGGCAAACTTCCAGGCAACGGATCTTTCTTTAACTCATTTTCATTATT
GGCTTCCAttaattcgattttttgacgaaGAGCTTGTATTGCcaattctt
tttctctttccatCTGCCCTAGTTTAATCTCATTGTTTTTCTCTAAGTCC
TTCATCTTCAATGCGAACTCATTTTCCTTGGCAGCCATTTTGGTTTGGTA
ATCATGCTCTTTCACCAGAAATGCTTTCTCCATTTCATTGATTTTCGCCT
tgcattcattttccttggcaGCGACTTCCTTGTCTTTTTCAGCTAGTTTG
TTCTGCAACTCATTCTGCTGTTTCAGCATTTCTTGATTAACTACACCTTT
GTGTGAGTCCAACTCATTCGTTTTCTTTAACTTCATGAGTTCCAGGTCAT
GAGTTAAAGATTGATTGTCCTTTTCAAGCtgcaaaatcttcattttttgc
tCTTTGTCTTGGTTGGACATTTCTTTCTCCAATTCAAGAATTTTGATGCG
ATTTTCAAATATCATATTTTGAATCTGATTGCCATGGTCATCTTTAAGTT
TTGCGCATTCACTGCTGTTGTCAACTTTGTTGGTGGCATTTCTACCAGTA
GCACTGTGTGCCAAATTGTGATCATCAAAGTGTGCAGAATCcattttttc
gtttcttttttgGTCTACATGAGAA
Run BLAST on NCBI

protein sequence of TCONS_00073331-protein

>TCONS_00073331-protein ID=TCONS_00073331-protein|Name=TCONS_00073331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
SHVDQKRNEKMDSAHFDDHNLAHSATGRNATNKVDNSSECAKLKDDHGNQ
IQNMIFENRIKILELEKEMSNQDKEQKMKILQLEKDNQSLTHDLELMKLK
KTNELDSHKGVVNQEMLKQQNELQNKLAEKDKEVAAKENECKAKINEMEK
AFLVKEHDYQTKMAAKENEFALKMKDLEKNNEIKLGQMEREKELAIQALR
QKIELMEANNENELKKDPLPGSLPIVQLPSSATNKEDKLLWGANKYFLGK
ETGSNLFTSYKDWYEAISALLENGIQKSVKHGGRNFYFIMKEIILATDPL
FLITRRRN
Run BLAST on NCBI

transcript from alignment at scaffold_9:69911..70835

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073331 ID=TCONS_00073331|Name=TCONS_00073331|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at scaffold_9:69911..70835 (Clytia hemisphaerica)
TTCTCATGTAGACcaaaaaagaaacgaaaaaatgGATTCTGCACACTTTG ATGATCACAATTTGGCACACAGTGCTACTGGTAGAAATGCCACCAACAAA GTTGACAACAGCAGTGAATGCGCAAAACTTAAAGATGACCATGGCAATCA GATTCAAAATATGATATTTGAAAATCGCATCAAAATTCTTGAATTGGAGA AAGAAATGTCCAACCAAGACAAAGagcaaaaaatgaagattttgcaGCTT GAAAAGGACAATCAATCTTTAACTCATGACCTGGAACTCATGAAGTTAAA GAAAACGAATGAGTTGGACTCACACAAAGGTGTAGTTAATCAAGAAATGC TGAAACAGCAGAATGAGTTGCAGAACAAACTAGCTGAAAAAGACAAGGAA GTCGCtgccaaggaaaatgaatgcaAGGCGAAAATCAATGAAATGGAGAA AGCATTTCTGGTGAAAGAGCATGATTACCAAACCAAAATGGCTGCCAAGG AAAATGAGTTCGCATTGAAGATGAAGGACTTAGAGAAAAACAATGAGATT AAACTAGGGCAGatggaaagagaaaaagaattgGCAATACAAGCTCttcg tcaaaaaatcgaattaaTGGAAGCCAATAATGAAAATGAGTTAAAGAAAG ATCCGTTGCCTGGAAGTTTGCCAATTGTGCAGCTACCATCATCCGCTACT AACAAAGAAGATAAACTGCTCTGGGGTGCTAATAAGTACTTTCTTGGCAA AGAAACAGGATCAAATCTTTTCACTTCGTACAAGGATTGGTATGAAGCTA TCTCAGCATTGTTGGAAAATGGAatacaaaaatcagtgaaacatggagga agaaatttttattttatcatgAAAGAAATAATTCTAGCAACTGATCCTCT GTTCCTTATTACCAGAAGAAGAAAT

Coding sequence (CDS) from alignment at scaffold_9:69911..70835

>TCONS_00073331 ID=TCONS_00073331|Name=TCONS_00073331|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_9:69911..70835 (Clytia hemisphaerica)
TCTCATGTAGACcaaaaaagaaacgaaaaaatgGATTCTGCACACTTTGA
TGATCACAATTTGGCACACAGTGCTACTGGTAGAAATGCCACCAACAAAG
TTGACAACAGCAGTGAATGCGCAAAACTTAAAGATGACCATGGCAATCAG
ATTCAAAATATGATATTTGAAAATCGCATCAAAATTCTTGAATTGGAGAA
AGAAATGTCCAACCAAGACAAAGagcaaaaaatgaagattttgcaGCTTG
AAAAGGACAATCAATCTTTAACTCATGACCTGGAACTCATGAAGTTAAAG
AAAACGAATGAGTTGGACTCACACAAAGGTGTAGTTAATCAAGAAATGCT
GAAACAGCAGAATGAGTTGCAGAACAAACTAGCTGAAAAAGACAAGGAAG
TCGCtgccaaggaaaatgaatgcaAGGCGAAAATCAATGAAATGGAGAAA
GCATTTCTGGTGAAAGAGCATGATTACCAAACCAAAATGGCTGCCAAGGA
AAATGAGTTCGCATTGAAGATGAAGGACTTAGAGAAAAACAATGAGATTA
AACTAGGGCAGatggaaagagaaaaagaattgGCAATACAAGCTCttcgt
caaaaaatcgaattaaTGGAAGCCAATAATGAAAATGAGTTAAAGAAAGA
TCCGTTGCCTGGAAGTTTGCCAATTGTGCAGCTACCATCATCCGCTACTA
ACAAAGAAGATAAACTGCTCTGGGGTGCTAATAAGTACTTTCTTGGCAAA
GAAACAGGATCAAATCTTTTCACTTCGTACAAGGATTGGTATGAAGCTAT
CTCAGCATTGTTGGAAAATGGAatacaaaaatcagtgaaacatggaggaa
gaaatttttattttatcatgAAAGAAATAATTCTAGCAACTGATCCTCTG
TTCCTTATTACCAGAAGAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045495XLOC_045495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073331-exon-scaffold_9-1491911889:69911..70835TCONS_00073331-exon-scaffold_9-1491911889:69911..70835Clytia hemisphaericaexon
TCONS_00073331-exon-scaffold_9-1510915933:69911..70835TCONS_00073331-exon-scaffold_9-1510915933:69911..70835Clytia hemisphaericaexon
TCONS_00073331-exon-scaffold_9-1575043694:69911..70835TCONS_00073331-exon-scaffold_9-1575043694:69911..70835Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073331-proteinTCONS_00073331-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:69911..70835 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.650233 0.724785 0.56103 0.329328 0.334104 0.686435 1.21038 1.61026 2.40065 3.85555 1.55622 1.32 1.8896 1.84805 7.98713 7.36802 3.6081 4.03846 2.07275 2.57693 1.74012 1.82268 4.48822 6.17222 4.89436 4.98533 10.4317 11.3841 4.8397 3.70674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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