TCONS_00073328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073328
Unique NameTCONS_00073328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073328 ID=TCONS_00073328|Name=TCONS_00073328|organism=Clytia hemisphaerica|type=transcript|length=1451bp
ATTTCAtcttttactcattttttgtgATGAGTGCACGGtgtatgacgtca
taaacaaaTTGTGTCAGGAATTGCGTTAAACAGGGCAACATCATTGCTTT
GTTTCGAAAACGGTGGCAGATACCACTGTAAAAAAACTGCCATCAGCAAG
TGAACATATAGTTGACCCTCGCTAACCTAAAATTTGGTGGGGGATCTAGT
TTCGACATACAGAGAGATTTAAATCATAGAAAATCCATCAAGGTTCCGGG
CCATGAcaaagaattattttgaatttgtagaAGGGATCGAATGCCAACTC
TGGTTTCTTTCGGATCTTTCGCAGACTACATTAGCCAATATAGAGCTACT
TTTTTTGAAACGATTCGGAAAAAACGAtttaaagtgctgatttactgtCG
TCCTCAATCattcaggatctagacaaataaAGTCGCTaccggtaaggttc
taattggACTGTATCCTGACCAATNTAGCCGTCTTCGCCACAGGACAAAC
TCCATACATAAAGTCGCTaccggtaaggttctaattggACTATATCCTGA
CCAATTGTGGACGACATTTTAGGGGTTAGAAGTGCGAATTATTccaaata
cataaacttgccACTATTAATGTGACGCAGAGGTAAACACATGTACGACT
CATTCATTTTGAGTTTTCACGCTAAAATATCTTCATATTTTCACAGATTG
TGAATGGTTCAAAGGATAGGAAGTGTTCCAACTCCTTCCTGCACTTCCGT
CATTCGAGATGTTGAATAGCACAAGTACAACTTTTGAACTTCTGGTTCAA
TGATGGTCGTCTCCAGTGGTGTATTCGCAGAACTTGCTTCGTGGACACAC
TACGTGGTCACTTTCTCTCGTCTGGGAAGGCCATGTCTCATCAACGAGAG
CCTATGCTGCTGtactttcaaatttcaattttattttttcggtAGCTGCA
TAAAAAATCATCAGTGTAACCAGAGCTCTCTTATAAGAAGCAGCAAACTT
TTTTGAGGCttagctgttcttattttttggcactatGAACCTTAAGATAT
TCTGATCCTGCTCTTGTTTTAGGGAAAGATTTAAATAtcattcttcttaa
tttgttcttaacatttgaCGCTTTAAAGTTTCATTGTTGTATTGAAACAT
AAGGAGTGCATTCAGATTGGATTTCCCCGAGTTCTCGTTAAGTTTATTTT
AGGTGTTTTAAAAtccattttgtttttctgactattttattttttataag
atttctAAGATTTACCCAGATGAAACATGTAGCAAATTTAACCAGATTTT
ATTTATATagatattttataattttaattcCTATTATTTTATTGACAGAG
TATAAGATTTTacgagatttttatttttttgaattttggattgAAATTTT
TAGTTTATAAATAAGTATAGAAAATAtctattgattttgatttatgAATT
C
Run BLAST on NCBI

transcript from alignment at scaffold_9:13057..14507

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073328 ID=TCONS_00073328|Name=TCONS_00073328|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_9:13057..14507 (Clytia hemisphaerica)
GAATTcataaatcaaaatcaatagaTATTTTCTATACTTATTTATAAACT AAAAATTTcaatccaaaattcaaaaaaataaaaatctcgtAAAATCTTAT ACTCTGTCAATAAAATAATAGgaattaaaattataaaatatctATATAAA TAAAATCTGGTTAAATTTGCTACATGTTTCATCTGGGTAAATCTTagaaa tcttataaaaaataaaatagtcagaaaaacaaaatggaTTTTAAAACACC TAAAATAAACTTAACGAGAACTCGGGGAAATCCAATCTGAATGCACTCCT TATGTTTCAATACAACAATGAAACTTTAAAGCGtcaaatgttaagaacaa attaagaagaatgaTATTTAAATCTTTCCCTAAAACAAGAGCAGGATCAG AATATCTTAAGGTTCatagtgccaaaaaataagaacagctaaGCCTCAAA AAAGTTTGCTGCTTCTTATAAGAGAGCTCTGGTTACACTGATGATTTTTT ATGCAGCTaccgaaaaaataaaattgaaatttgaaagtaCAGCAGCATAG GCTCTCGTTGATGAGACATGGCCTTCCCAGACGAGAGAAAGTGACCACGT AGTGTGTCCACGAAGCAAGTTCTGCGAATACACCACTGGAGACGACCATC ATTGAACCAGAAGTTCAAAAGTTGTACTTGTGCTATTCAACATCTCGAAT GACGGAAGTGCAGGAAGGAGTTGGAACACTTCCTATCCTTTGAACCATTC ACAATCTGTGAAAATATGAAGATATTTTAGCGTGAAAACTCAAAATGAAT GAGTCGTACATGTGTTTACCTCTGCGTCACATTAATAGTggcaagtttat gtatttggAATAATTCGCACTTCTAACCCCTAAAATGTCGTCCACAATTG GTCAGGATATAGTccaattagaaccttaccggtAGCGACTTTATGTATGG AGTTTGTCCTGTGGCGAAGACGGCTANATTGGTCAGGATACAGTccaatt agaaccttaccggtAGCGACTttatttgtctagatcctgaatGATTGAGG ACGacagtaaatcagcactttaaaTCGTTTTTTCCGAATCGTTTCAAAAA AAGTAGCTCTATATTGGCTAATGTAGTCTGCGAAAGATCCGAAAGAAACC AGAGTTGGCATTCGATCCCTtctacaaattcaaaataattctttgTCATG GCCCGGAACCTTGATGGATTTTCTATGATTTAAATCTCTCTGTATGTCGA AACTAGATCCCCCACCAAATTTTAGGTTAGCGAGGGTCAACTATATGTTC ACTTGCTGATGGCAGTTTTTTTACAGTGGTATCTGCCACCGTTTTCGAAA CAAAGCAATGATGTTGCCCTGTTTAACGCAATTCCTGACACAAtttgttt atgacgtcatacaCCGTGCACTCATcacaaaaaatgagtaaaagaTGAAA T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045492XLOC_045492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073328-exon-scaffold_9-1491911889:13057..14507TCONS_00073328-exon-scaffold_9-1491911889:13057..14507Clytia hemisphaericaexon
TCONS_00073328-exon-scaffold_9-1510915933:13057..14507TCONS_00073328-exon-scaffold_9-1510915933:13057..14507Clytia hemisphaericaexon
TCONS_00073328-exon-scaffold_9-1575043694:13057..14507TCONS_00073328-exon-scaffold_9-1575043694:13057..14507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:13057..14507 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0573767 0.0531289 0.0316423 1.05814 0.699824 1.13235 1.07956 0.772976 0.710928 0.499923 0.550901 2.08152 1.62694 0.428633 0.3375 0.389628 0.753966 0.582597 0.698087 0.629952 0.542496 0.351448 0.44752 0.436809 0.388306 1.34395 1.06094 1.2415 0.679679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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