TCONS_00073324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073324
Unique NameTCONS_00073324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073324 ID=TCONS_00073324|Name=TCONS_00073324|organism=Clytia hemisphaerica|type=transcript|length=246bp
ATTTATTTCCTATCAAACTTggTGCTTAGTGAAATGCTAGAAAAAGTTCG
AGAATACATTGGATGTCTTCATAAACTAGCGGAATGTGTTTCCATGCTTG
ATTTGTTAGTCTCGTTTGCGCATGCGTGCACATTGTCAAATTATGTGCGA
CCAGAGTTTACAGACACGTTGGCAATTAAAGAAGGACGCCATCCCATTCT
TGATAAAATTTCTACGGATAAACAGCTCATCGGAAATGATGTTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_9:315870..318191-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073324 ID=TCONS_00073324|Name=TCONS_00073324|organism=Clytia hemisphaerica|type=transcript|length=2322bp|location=Sequence derived from alignment at scaffold_9:315870..318191- (Clytia hemisphaerica)
ATTTATTTCCTATCAAACTTGTAGGTTACATTTCTTTCCACATCTTTTAA TCTTTTAAAAGTAAAATTAATATTTAACGTTAAAATTCTAGTCATTTTTG GCAATACCAAGCCTCTGCAAGCATAAGTAGGAGGAAGAGAGAAGATCCAT AACAAGTTATCTCCGGTTTTTGGTACTTACTACATGTTTTAGAAATGTGT CTGTCTCACAGCTCCGGTGGGATTTTTTTTCCTTAGTGGGGATAAAAATT CCTTTTCAAAATCCAATGGGGATAGAAATTCTATTGCTTCAAGCGTAAAA AATCCAGTGGGAATGGTTTCGGAGTACAATTTTCAAACATTGAATGTTGA ATGGGGATGAAATTAAAGTCAATCTCCCAGTGGGGCTGAAATTCTAGGGT AATTTCCCACCGGGGACGAAATTTTTGCCAAATTTTCCAATGGAGCTGGG GTCCCAGCGGGTCTGTAACACAGGGATGTGTCTAAGCAGTTTTAATGAAA TTCCAAGCCCCCCCCCCCTTTGGAGCTTATTTATTTAACCAATTCAACAT TTTTCTCATTTTTAGGGTGCTTAGTGAAATGCTAGAAAAAGTTCGAGAAT ACATTGGATGTCTTCATAAACTAGCGGAATGTGTTTCCATGCTTGATTTG TTAGTCTCGTTTGCGCATGCGTGCACATTGTCAAATTATGGTATGATTTA TTTTACATGCCTCTTAAATAATACAAAATTAAAGTGGTAAGTATTCATAA AAGGGTCATANAGAGAAGATCCATAACAAGTTATCTCCGGTTTTTGGTAC TTACTACATGTTTTAGAAATGTGTCTGTCTCACAGCTCCGGTGGGATTTT TTTCCTTAGTGGGGATAAAAATTCCTTTTCAAAATCCAATGGGGATAGAA ATTCTATTGCTTCAAGCGTAAAAAATCCAGTGGGAATGGTTTCGGAGTAC AATTTTCAAACATTGAATGTTGAATGGGGATGAAATTAAAGTCAATCTCC CAGTGGGGCTGAAATTCTAGGGTAATTTCCCACCGGGGACGAAATTTTTG CCAAATTTTCCAATGGAGCTGGGGTCCCAGCGGGTCTGTAACACAGGGAT GTGTCTAAGCAGTTTTAATGAAATTCCAAGCCCCCCCCCCCTTTGGAGCT TATTTATTTAACCAATTCAACATTTTTCTCATTTTTAGGGTGCTTAGTGA AATGCTAGAAAAAGTTCGAGAATACATTGGATGTCTTCATAAACTAGCGG AATGTGTTTCCATGCTTGATTTGTTAGTCTCGTTTGCGCATGCGTGCACA TTGTCAAATTATGGTATGATTTATTTTACATGCCTCTTAAATAATACAAA ATTAAAGTGGTAAGTATTCATAAAAGGGTCATAATAATCAACATTCCCTG AAACACTAAGGCCTAGATTCTTTTAACAAAGGATATTTTACGATGTTAGC TATTAACTTATGCTTAGTGTTTAAACTCTTGGTTTGAGACTTTCTTTGGC AATTTGCGACTTATATTGTGCTTAACCTGTTCTTTTCAGGGCGAACTTCT GGCTTTTTACTCTAAATTCTTGCTAAAAACTCTGCAATTCCGAAAAGACT TATGTTATATTGTCCTTAAATTGTCCTTATTTGTTGAAGATCTGAGCCTC ACATTTCTAAAAATTGTTTTTATAAAAAATGAGTACCTATAACTTTCTGG AAAAGGTCCTTTCTTTCATCACTCCTGCTGACACACAGGTTCGTCCATAA GGCGAGACCAATTTGATTAGTTGTTTTACAGGCCCGATCAACCCTGAAAT TTCAAAATCGAAATAAAAATAAAATTTAATCTCATGGTATGTTTTTATTT TCATTGCTTTACAGACTGTCAAATTTTCAAATTTTGGCAGTTTTTCAAAG GTTTCGAGGTTGCTCAATTTTTCATTTTATCCATGAATTCGAGCTTTTTG TGTCTTTTTAACTTCTTTTTCGCATTTTTGTCAAGATGTAGTAGTTTTTG CTGGGTTTTTAGGAGATTTTATAGGTGAAATTCTACTTTTATTTTTATTT TTTCGCCGACCGACCCTTTTTTGGGCAGCTATGCCCGTAAAACAACAAAT TAAATTAGCTTCGCCTAACTATATGGATGTTATAGCCGTTAGATGAACGT CGTTATAACATTTTTGTGCCAGCTTGGGGTTTGGACTTGCCATAACTGAG CCGTTTGGTCTTCCTTTTCAGTGCGACCAGAGTTTACAGACACGTTGGCA ATTAAAGAAGGACGCCATCCCATTCTTGATAAAATTTCTACGGATAAACA GCTCATCGGAAATGATGTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045490XLOC_045490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073324-exon-scaffold_9-1575043694:318172..318191TCONS_00073324-exon-scaffold_9-1575043694:318172..318191Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1575043694:317502..317626TCONS_00073324-exon-scaffold_9-1575043694:317502..317626Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1575043694:315870..315970TCONS_00073324-exon-scaffold_9-1575043694:315870..315970Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1510915933:318172..318191TCONS_00073324-exon-scaffold_9-1510915933:318172..318191Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1510915933:317502..317626TCONS_00073324-exon-scaffold_9-1510915933:317502..317626Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1510915933:315870..315970TCONS_00073324-exon-scaffold_9-1510915933:315870..315970Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1491911889:318172..318191TCONS_00073324-exon-scaffold_9-1491911889:318172..318191Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1491911889:317502..317626TCONS_00073324-exon-scaffold_9-1491911889:317502..317626Clytia hemisphaericaexon
TCONS_00073324-exon-scaffold_9-1491911889:315870..315970TCONS_00073324-exon-scaffold_9-1491911889:315870..315970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:315870..318191 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.53541 4.77979 9.71214 5.88207 2.75418 0.870555 6.30172 5.40796 5.16306 5.96893 7.03507 2.99237 3.53153 1.97482 1.15969 3.98249 0.919895 3.45716 2.60523 1.81746 1.97463 2.88946 2.34168 2.12893 28.5057 17.2213 0.560084 1.19547 1.36009 1.38571
Blast
BLAST of TCONS_00073324 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.134e-28
Identity = 48/82 (58.54%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 IYFLSNLVLSEMLEKVREYIGCLHKLAECVSMLDLLVSFAHACTLSNYVRPEFTDTLAIKEGRHPILDKISTDKQLIGNDVV 246
            IY ++ +++ ++L ++ E+I CL+KL++ VSMLD+L+SFAHACTLS+YVRPEFTDTLAIK+G HPIL+KIS +K +  N  V
Sbjct:  588 IYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISAEKPIANNTYV 669          
The following BLAST results are available for this feature:
BLAST of TCONS_00073324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH46.134e-2858.54MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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