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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073321 ID=TCONS_00073321|Name=TCONS_00073321|organism=Clytia hemisphaerica|type=transcript|length=1287bp
CCTCCAATATTGTCACCAGATAGTCTTTTCAAAAGGACACCCATCATTTT
TGGTGTGTTCCATGTCATTCCGTACATTGTTGGAATCTCCTCAAGTCGTC
CATAACCTTGCACGGAATTACTAGCGTACAAGAGTGGTTTCAAtaattga
agattttcatcgtcaagaaattcttcaaaagttttaTCAACTCTCTCTTT
GTCCTGTATGAGTGAATAGTATACATGAATGACAAcaataaaagttaaat
ttccTGTTTGAGCTTTTGTTGCTGTTGCTTTGTGTTGAAAATATGCAGTT
CAGTTGCCGACAGTTTCAAGATAAAAGCCTAAAACAATTTCATAGCCCAC
GCAAGAATTAACCTTTTGATATTCTGTTGTTCAAAAGGAGAGACCTCATT
CAACTGCTAAATCGAAATAGAGTAATCTAAGGGAACTAAGTACGAGTATT
TACCTTTGGTTCGACCAGCTCTGGCAGATGTTCACCATCATAGACACCAA
ACAGTTCACGATGAATTCTTATATAGCCTGAGATGGCATCAAAAAAACCT
TTCTTAATGACAGTTATATTTGTAGTCTTCAGGTGCTGGATGGCGTAACg
aaaaatatagcttttataGTCTGCAGGCTCTTTCCCATCAAGCCATATTG
ATGCAGGTGGGAAATGAACTAAATCGCCGGGTGCATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACgaaaaatatagc
ttttataGTCTGCAGGCTCTTTCCCATCAAGCCATATTGATGCAGGTGGG
AAATGAACTAAATCGCCGGGTGCATATTCATTCACTAAGGAGATTATATT
ATCTTCATAATCAGGCTGTAAATAGACAGTGCCCATCTCATGAGGAGCCC
CACGTCTTTCTATTGTCCATGATTTACCACCAAAATCGTTCGATCTTTCA
AGGATCGTTACATCAGTAAATTTCAACTTCTTTAACAATAGTGCCATGTG
AATACCGGATGGTCCAGCTCCTATAATGGCTATCCGGTCATTGAGTGATT
TCGGTCCTGGTATCTTGAAATTCAATTTACGTTGAGCGTTCGATAATTTA
TGCAATGCGCAAAATAACGCCAGCAAAGTTATTGttgtcaatttcatttt
ttcttgattttgtcACTAAAATCCAAATAAAAGTAGTGGTCAAAGAATTT
AGAAGAAAACTGTTTTTACTTCGGGTTTTTCCTTCTT Run BLAST on NCBI transcript from alignment at scaffold_9:303680..305093- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073321 ID=TCONS_00073321|Name=TCONS_00073321|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_9:303680..305093- (Clytia hemisphaerica)
CCTCCAATATTGTCACCAGATAGTCTTTTCAAAAGGACACCCATCATTTT
TGGTGTGTTCCATGTCATTCCGTACATTGTTGGAATCTCCTCAAGTCGTC
CATAACCTTGCACGGAATTACTAGCGTACAAGAGTGGTTTCAATAATTGA
AGATTTTCATCGTCAAGAAATTCTTCAAAAGTTTTATCAACTCTCTCTTT
GTCCTGTATGAGTGAATAGTATACATGAATGACAACAATAAAAGTTAAAT
TTCCTGTTTGAGCTTTTGTTGCTGTTGCTTTGTGTTGAAAATATGCAGTT
CAGTTGCCGACAGTTTCAAGATAAAAGCCTAAAACAATTTCATAGCCCAC
GCAAGAATTAACCTTTTGATATTCTGTTGTTCAAAAGGAGAGACCTCATT
CAACTGCTAAATCGAAATAGAGTAATCTAAGGGAACTAAGTACGAGTATT
TACCTTTGGTTCGACCAGCTCTGGCAGATGTTCACCATCATAGACACCAA
ACAGTTCACGATGAATTCTTATATAGCCTGAGATGGCATCAAAAAAACCT
TTCTTAATGACAGTTATATTTGTAGTCTTCAGGTGCTGGATGGCGTAACG
AAAAATATAGCTTTTATAGTCTGCAGGCTCTTTCCCATCAAGCCATATTG
ATGCAGGTGGGAAATGAACTAAATCGCCGGGTGCATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGAAAAATATAGC
TTTTATAGTCTGCAGGCTCTTTCCCATCAAGCCATATTGATGCAGGTGGG
AAATGAACTAAATCGCCGGGTGCATATTCATTCACTAAGGAGATTATATT
ATCTTCATAATCAGGCTGTAAATAGACAGTGNTAGTCTGCAGGCTCTTTC
CCATCAAGCCATATTGATGCAGGTGGGAAATGAACTAAATCGCCGGGTGC
ATACTCATTCACTAAGGAGATTATATTATCTTCATAATCAGGCTGTAAAT
AGACAGTGCCCATCTCATGAGGAGCCCCACGTCTTTCTATTGTCCATGAT
TTACCACCAAAATCGTTCGATCTTTCAAGGATCGTTACATCAGTAAATTT
CAACTTCTTTAACAATAGTGCCATGTGAATACCGGATGGTCCAGCTCCTA
TAATGGCTATCCGGTCATTGAGTGATTTCGGTCCTGGTATCTTGAAATTC
AATTTACGTTGAGCGTTCGATAATTTATGCAATGCGCAAAATAACGCCAG
CAAAGTTATTGTTGTCAATTTCATTTTTTCTTGATTTTGTCACTAAAATC
CAAATAAAAGTAGTGGTCAAAGAATTTAGAAGAAAACTGTTTTTACTTCG
GGTTTTTCCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073321-exon-scaffold_9-1575043694:304180..305093 | TCONS_00073321-exon-scaffold_9-1575043694:304180..305093 | Clytia hemisphaerica | exon |
| TCONS_00073321-exon-scaffold_9-1575043694:303680..304052 | TCONS_00073321-exon-scaffold_9-1575043694:303680..304052 | Clytia hemisphaerica | exon |
| TCONS_00073321-exon-scaffold_9-1510915933:304180..305093 | TCONS_00073321-exon-scaffold_9-1510915933:304180..305093 | Clytia hemisphaerica | exon |
| TCONS_00073321-exon-scaffold_9-1510915933:303680..304052 | TCONS_00073321-exon-scaffold_9-1510915933:303680..304052 | Clytia hemisphaerica | exon |
| TCONS_00073321-exon-scaffold_9-1491911889:304180..305093 | TCONS_00073321-exon-scaffold_9-1491911889:304180..305093 | Clytia hemisphaerica | exon |
| TCONS_00073321-exon-scaffold_9-1491911889:303680..304052 | TCONS_00073321-exon-scaffold_9-1491911889:303680..304052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:303680..305093 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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