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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073317 ID=TCONS_00073317|Name=TCONS_00073317|organism=Clytia hemisphaerica|type=transcript|length=1348bp
TGCTGGTTCAGAACAGATGATTTCAAAGAACCTCTCTGTGGATGCTTTCA
AGTACAGAGAGGCTTTTCATGTCCAAGATTTAACTCATtacatttttgaa
tttcagtcccattcagggtcacttttttcgcaaatttcgagtcccacgta
gggtccatttttcgaacctcagcggagcacccctgtcggtcgacaagggt
agtcccccccccccgggtccaATATTTAACTCATTATTTAGCAACAGGTG
ACAAGAGATTGTGACAAATAAATCTTTACTATTAGCACAAcagctttttt
tgttttcattcaaaggATAACAAAAAACACTATATAccttttttaatttc
ttattgatattttgtagattcaataattgaaaaatgagTGGAGGTCTTGC
CCCCAGCAAAAGTACAGTTTATGTTGGTAATCTACCTTTCTCCCTTACTA
ATAATGATTTACAcaaggtttttgaaaaattcggaCGGATAGCTAAAGTT
ACAATCTTAAGAGATAAAGTAACACGAACCAGTAAAGGCGTTGCTTTCGT
TCAATTCATCGAGAGAGATTCTGCTATCACATGTTGTAAATCAGTTAatg
aaaaaacgttgtttgaacgGAAAATAAAATGTGTCATTGCAAAAGACAAT
GGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTATCCAGATAAATCTAG
TTGTTATGAATGTGGAGAGACTGGACATCTTAGCTATGCTTGCCCAAAAA
ATTTACTTGGGAGCCGAGAGCCACCacctaaaaaagagaaaaaaactaag
aaaGAGAAAGCAGAGGAGAAAGAACATTCAAAGAAtttaatcaagagtta
ttaTGATGCTGATGAGGCAAATGATGGTGTTAATGAAGAAGAACAAGGGG
AAGACCCTTATGAATCAAGTCTCAGTTATGCAATTGCTCTTGATTCTAGT
CaacaaaaaagacatttttcCTCTATAGTTGTCCAACCTTCAACATCAAG
GACTTCAACAGATTACGATGGTTACAAGGATAATAATGATAGGGAAGAAG
AGAGTTatgtcaaaagaaaaaagtataaacCGTCATCATATTTCAGTGAC
GAGGAGGAAGAAGATGAATCTTAGGATAACAATTTGTGAACTTCTTCTTT
GTTCATTTAGtatcactaaatttgcaataaaaatatttggctgATTTATA
AATTATTATGTAAGCCAAATGccttttttaaatcaatgacatcttagaat
aaaaataaaatgcttCTGATTATTCGAACAATATGAAGGAATGGTTTGAT
AAgaacactttttaaatttagcaACTTGATTTCTGTGCTTCTAAaaac Run BLAST on NCBI transcript from alignment at scaffold_9:192786..194133- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073317 ID=TCONS_00073317|Name=TCONS_00073317|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at scaffold_9:192786..194133- (Clytia hemisphaerica)
TGCTGGTTCAGAACAGATGATTTCAAAGAACCTCTCTGTGGATGCTTTCA
AGTACAGAGAGGCTTTTCATGTCCAAGATTTAACTCATTACATTTTTGAA
TTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGTA
GGGTCCATTTTTCGAACCTCAGCGGAGCACCCCTGTCGGTCGACAAGGGT
AGTCCCCCCCCCCCGGGTCCAATATTTAACTCATTATTTAGCAACAGGTG
ACAAGAGATTGTGACAAATAAATCTTTACTATTAGCACAACAGCTTTTTT
TGTTTTCATTCAAAGGATAACAAAAAACACTATATACCTTTTTTAATTTC
TTATTGATATTTTGTAGATTCAATAATTGAAAAATGAGTGGAGGTCTTGC
CCCCAGCAAAAGTACAGTTTATGTTGGTAATCTACCTTTCTCCCTTACTA
ATAATGATTTACACAAGGTTTTTGAAAAATTCGGACGGATAGCTAAAGTT
ACAATCTTAAGAGATAAAGTAACACGAACCAGTAAAGGCGTTGCTTTCGT
TCAATTCATCGAGAGAGATTCTGCTATCACATGTTGTAAATCAGTTAATG
AAAAAACGTTGTTTGAACGGAAAATAAAATGTGTCATTGCAAAAGACAAT
GGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTATCCAGATAAATCTAG
TTGTTATGAATGTGGAGAGACTGGACATCTTAGCTATGCTTGCCCAAAAA
ATTTACTTGGGAGCCGAGAGCCACCACCTAAAAAAGAGAAAAAAACTAAG
AAAGAGAAAGCAGAGGAGAAAGAACATTCAAAGAATTTAATCAAGAGTTA
TTATGATGCTGATGAGGCAAATGATGGTGTTAATGAAGAAGAACAAGGGG
AAGACCCTTATGAATCAAGTCTCAGTTATGCAATTGCTCTTGATTCTAGT
CAACAAAAAAGACATTTTTCCTCTATAGTTGTCCAACCTTCAACATCAAG
GACTTCAACAGATTACGATGGTTACAAGGATAATAATGATAGGGAAGAAG
AGAGTTATGTCAAAAGAAAAAAGTATAAACCGTCATCATATTTCAGTGAC
GAGGAGGAAGAAGATGAATCTTAGGATAACAATTTGTGAACTTCTTCTTT
GTTCATTTAGTATCACTAAATTTGCAATAAAAATATTTGGCTGATTTATA
AATTATTATGTAAGCCAAATGCCTTTTTTAAATCAATGACATCTTAGAAT
AAAAATAAAATGCTTCTGATTATTCGAACAATATGAAGGAATGGTTTGAT
AAGAACACTTTTTAAATTTAGCAACTTGATTTCTGTGCTTCTAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073317-exon-scaffold_9-1575043694:192786..194133 | TCONS_00073317-exon-scaffold_9-1575043694:192786..194133 | Clytia hemisphaerica | exon |
| TCONS_00073317-exon-scaffold_9-1510915933:192786..194133 | TCONS_00073317-exon-scaffold_9-1510915933:192786..194133 | Clytia hemisphaerica | exon |
| TCONS_00073317-exon-scaffold_9-1491911889:192786..194133 | TCONS_00073317-exon-scaffold_9-1491911889:192786..194133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:192786..194133 - |
Blast
BLAST of TCONS_00073317 vs. Swiss-Prot (Human)
Match: ZCRB1 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 6.254e-60 Identity = 88/128 (68.75%), Postives = 109/128 (85.16%), Query Frame = 3
Query: 384 MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTSKGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKDYPDKSSCYECGETGHLSYACPKNLLGSR 767
MSGGLAPSKSTVYV NLPFSLTNNDL+++F K+G++ KVTI++DK TR SKGVAF+ F+++DSA C +++N K LF R IK IA DNGRA+EFIR+++Y DKS CYECGE+GHLSYACPKN+LG R
Sbjct: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 128
The following BLAST results are available for this feature:
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