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TCONS_00073317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073317
Unique NameTCONS_00073317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073317 ID=TCONS_00073317|Name=TCONS_00073317|organism=Clytia hemisphaerica|type=transcript|length=1348bp
TGCTGGTTCAGAACAGATGATTTCAAAGAACCTCTCTGTGGATGCTTTCA
AGTACAGAGAGGCTTTTCATGTCCAAGATTTAACTCATtacatttttgaa
tttcagtcccattcagggtcacttttttcgcaaatttcgagtcccacgta
gggtccatttttcgaacctcagcggagcacccctgtcggtcgacaagggt
agtcccccccccccgggtccaATATTTAACTCATTATTTAGCAACAGGTG
ACAAGAGATTGTGACAAATAAATCTTTACTATTAGCACAAcagctttttt
tgttttcattcaaaggATAACAAAAAACACTATATAccttttttaatttc
ttattgatattttgtagattcaataattgaaaaatgagTGGAGGTCTTGC
CCCCAGCAAAAGTACAGTTTATGTTGGTAATCTACCTTTCTCCCTTACTA
ATAATGATTTACAcaaggtttttgaaaaattcggaCGGATAGCTAAAGTT
ACAATCTTAAGAGATAAAGTAACACGAACCAGTAAAGGCGTTGCTTTCGT
TCAATTCATCGAGAGAGATTCTGCTATCACATGTTGTAAATCAGTTAatg
aaaaaacgttgtttgaacgGAAAATAAAATGTGTCATTGCAAAAGACAAT
GGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTATCCAGATAAATCTAG
TTGTTATGAATGTGGAGAGACTGGACATCTTAGCTATGCTTGCCCAAAAA
ATTTACTTGGGAGCCGAGAGCCACCacctaaaaaagagaaaaaaactaag
aaaGAGAAAGCAGAGGAGAAAGAACATTCAAAGAAtttaatcaagagtta
ttaTGATGCTGATGAGGCAAATGATGGTGTTAATGAAGAAGAACAAGGGG
AAGACCCTTATGAATCAAGTCTCAGTTATGCAATTGCTCTTGATTCTAGT
CaacaaaaaagacatttttcCTCTATAGTTGTCCAACCTTCAACATCAAG
GACTTCAACAGATTACGATGGTTACAAGGATAATAATGATAGGGAAGAAG
AGAGTTatgtcaaaagaaaaaagtataaacCGTCATCATATTTCAGTGAC
GAGGAGGAAGAAGATGAATCTTAGGATAACAATTTGTGAACTTCTTCTTT
GTTCATTTAGtatcactaaatttgcaataaaaatatttggctgATTTATA
AATTATTATGTAAGCCAAATGccttttttaaatcaatgacatcttagaat
aaaaataaaatgcttCTGATTATTCGAACAATATGAAGGAATGGTTTGAT
AAgaacactttttaaatttagcaACTTGATTTCTGTGCTTCTAAaaac
Run BLAST on NCBI

transcript from alignment at scaffold_9:192786..194133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073317 ID=TCONS_00073317|Name=TCONS_00073317|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at scaffold_9:192786..194133- (Clytia hemisphaerica)
TGCTGGTTCAGAACAGATGATTTCAAAGAACCTCTCTGTGGATGCTTTCA AGTACAGAGAGGCTTTTCATGTCCAAGATTTAACTCATTACATTTTTGAA TTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGTA GGGTCCATTTTTCGAACCTCAGCGGAGCACCCCTGTCGGTCGACAAGGGT AGTCCCCCCCCCCCGGGTCCAATATTTAACTCATTATTTAGCAACAGGTG ACAAGAGATTGTGACAAATAAATCTTTACTATTAGCACAACAGCTTTTTT TGTTTTCATTCAAAGGATAACAAAAAACACTATATACCTTTTTTAATTTC TTATTGATATTTTGTAGATTCAATAATTGAAAAATGAGTGGAGGTCTTGC CCCCAGCAAAAGTACAGTTTATGTTGGTAATCTACCTTTCTCCCTTACTA ATAATGATTTACACAAGGTTTTTGAAAAATTCGGACGGATAGCTAAAGTT ACAATCTTAAGAGATAAAGTAACACGAACCAGTAAAGGCGTTGCTTTCGT TCAATTCATCGAGAGAGATTCTGCTATCACATGTTGTAAATCAGTTAATG AAAAAACGTTGTTTGAACGGAAAATAAAATGTGTCATTGCAAAAGACAAT GGGAGAGCTTCAGAGTTCATTCGAAAAAAGGATTATCCAGATAAATCTAG TTGTTATGAATGTGGAGAGACTGGACATCTTAGCTATGCTTGCCCAAAAA ATTTACTTGGGAGCCGAGAGCCACCACCTAAAAAAGAGAAAAAAACTAAG AAAGAGAAAGCAGAGGAGAAAGAACATTCAAAGAATTTAATCAAGAGTTA TTATGATGCTGATGAGGCAAATGATGGTGTTAATGAAGAAGAACAAGGGG AAGACCCTTATGAATCAAGTCTCAGTTATGCAATTGCTCTTGATTCTAGT CAACAAAAAAGACATTTTTCCTCTATAGTTGTCCAACCTTCAACATCAAG GACTTCAACAGATTACGATGGTTACAAGGATAATAATGATAGGGAAGAAG AGAGTTATGTCAAAAGAAAAAAGTATAAACCGTCATCATATTTCAGTGAC GAGGAGGAAGAAGATGAATCTTAGGATAACAATTTGTGAACTTCTTCTTT GTTCATTTAGTATCACTAAATTTGCAATAAAAATATTTGGCTGATTTATA AATTATTATGTAAGCCAAATGCCTTTTTTAAATCAATGACATCTTAGAAT AAAAATAAAATGCTTCTGATTATTCGAACAATATGAAGGAATGGTTTGAT AAGAACACTTTTTAAATTTAGCAACTTGATTTCTGTGCTTCTAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045485XLOC_045485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073317-exon-scaffold_9-1575043694:192786..194133TCONS_00073317-exon-scaffold_9-1575043694:192786..194133Clytia hemisphaericaexon
TCONS_00073317-exon-scaffold_9-1510915933:192786..194133TCONS_00073317-exon-scaffold_9-1510915933:192786..194133Clytia hemisphaericaexon
TCONS_00073317-exon-scaffold_9-1491911889:192786..194133TCONS_00073317-exon-scaffold_9-1491911889:192786..194133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:192786..194133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.43108 5.57649 3.3494 6.18548 4.43308 4.07246 3.12373 4.2222 0.986143 1.23413 1.91676 1.51114 2.06744 2.10849 1.66957 2.01862 1.54473 1.58376 1.90814 2.5654 2.96426 2.75417 6.90191 7.44398 2.57378 2.19707 2.40824 4.30862 3.54117 6.45631
Blast
BLAST of TCONS_00073317 vs. Swiss-Prot (Human)
Match: ZCRB1 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 6.254e-60
Identity = 88/128 (68.75%), Postives = 109/128 (85.16%), Query Frame = 3
Query:  384 MSGGLAPSKSTVYVGNLPFSLTNNDLHKVFEKFGRIAKVTILRDKVTRTSKGVAFVQFIERDSAITCCKSVNEKTLFERKIKCVIAKDNGRASEFIRKKDYPDKSSCYECGETGHLSYACPKNLLGSR 767
            MSGGLAPSKSTVYV NLPFSLTNNDL+++F K+G++ KVTI++DK TR SKGVAF+ F+++DSA  C +++N K LF R IK  IA DNGRA+EFIR+++Y DKS CYECGE+GHLSYACPKN+LG R
Sbjct:    1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGER 128          
The following BLAST results are available for this feature:
BLAST of TCONS_00073317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCRB16.254e-6068.75Zinc finger CCHC-type and RNA-binding motif-contai... [more]
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