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TCONS_00073310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073310
Unique NameTCONS_00073310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073310 ID=TCONS_00073310|Name=TCONS_00073310|organism=Clytia hemisphaerica|type=transcript|length=1430bp
GTTTCAGATACATGTAAAAgttctcaaacaaaatcaaaacaacaaaaagg
aaaatgttaTTCACATTAAAAGAATTGGAGAAATGGCTACAAGTGACCAT
CTTTGAGATCACGATCGCATGTGCATCCGCCCTTGTTTTTTCATTACTGT
TGGCGTTGAAACTTGAAAACGTTCTAGACGCTTCATGGTGGACAATTTTC
ACACCCTTATACGCCTGTGATACACTGATTGCTTACTTTGATTTGATCGT
CTTCATACATTTGTATAAAGCGAACGAACGACAGATGGCGGTCAAACGAA
TCATGATCAACACTACCATTATACTTTTGTTGATTATTTACAAAGTGTTG
CTATGCCAACAATTGGAAGGCATAAAGCAAATGAGATATTCGACCATCCA
TTCGCCCTTGTTCATTTTATTCTTCATACTTTTAGTTCGTTCTTGTATCG
TTTCCGCAAACACCTGAATGTGGTGAAGCTAGAGATTAATGAGATAAAAG
ATGGAGCTCTAACGAGAGTTTATATCTTCAGAAGCTTATGACTGGTTTGG
TCTTTCGTCTCACTTTTAAACGACAGAGAGATCAACTCAACTCAAAATAA
TGTATTAGATGAGTCAATGATACGTATACCAGATTCTACGAAGAAGCTTA
TTGTGTGGATTTTCTTCTTAAAGCTCTATGTGTAAATGATTGTGGACCCG
ATTGTGGGCTTTAAATTTTTCCGGATAACGCTGAATGTTTCATTGGTGAG
TCTTCATGGAAGAATTTGTAGGGTTATTTATGCAAGATGTAATTTGATTC
GACTTTCATGGTATTCGATTCGGATGGAAACTTTTAAAGGAATATAGAAA
TTAACTATATACATCAATTCTAATGCTGTTGCTGTTAATGTGGCAAATAC
AAAACAATTGCTAGTTCAACTTGAGACGAACTGAATGTAAATGAATGTGT
AAATATTGTGAATAGTATTTACTGACATTTAGTCTCAAGAATgagaaaac
gagaaaaaaatgCTGATTTGAAAAGTTAGGAGTgccattttagaaatttt
gactTTAGCCCCTCCATCCAGAAAATCTTTCCCATGTTTTGGTCCAATTG
AAATTTATTGTCAAATTTCCTTAACCTTTAGATATTTGTTCGAAGAAGGG
CTGTTTACTGGCCCTCCACCAGCTGGCAATAGCTTAGAACCACTGCATGT
TTGGCACTAAACTTTTGTAATCCTCCAAggatttttggaaagttttcttc
gattttcgaaaacttttaATCAGGGTATTTTTAGCCTGAGATCCGATGTT
AAACATTTGATGTGGTTATTCTAATTTCGCGAGTCGGCAATTTCACGTGA
TTTTGgagttttattttcgcgaaaaaggaaaaatttcgtAAAagcactac
atgttttttttataagcaagtgtatgccct
Run BLAST on NCBI

protein sequence of TCONS_00073310-protein

>TCONS_00073310-protein ID=TCONS_00073310-protein|Name=TCONS_00073310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MLFTLKELEKWLQVTIFEITIACASALVFSLLLALKLENVLDASWWTIFT
PLYACDTLIAYFDLIVFIHLYKANERQMAVKRIMINTTIILLLIIYKVLL
CQQLEGIKQMRYSTIHSPLFILFFILLVRSCIVSANT
Run BLAST on NCBI

transcript from alignment at scaffold_9:248197..249700+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073310 ID=TCONS_00073310|Name=TCONS_00073310|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_9:248197..249700+ (Clytia hemisphaerica)
GTTTCAGATACATGTAAAAgttctcaaacaaaatcaaaacaacaaaaagg aaaatgttaTTCACATTAAAAGAATTGGAGAAATGGCTACAAGTGACCAT CTTTGAGATCACGATCGCATGTGCATCCGCCCTTGTTTTTTCATTACTGT TGGCGTTGAAACTTGAAAACGTTCTAGACGCTTCATGGTGGACAATTTTC ACACCCTTATACGCCTGTGATACACTGATTGCTTACTTTGATTTGATCGT CTTCATACATTTGTATAAAGCGAACGAACGACAGATGGCGGTCAAACGAA TCATGATCAACACTACCATTATACTTTTGTTGATTATTTACAAAGTGTTG CTATGCCAACAATTGGAAGGCATAAAGCAAATGAGATATTCGACCATCCA TTCGCCCTTGTTCATTTTATTCTTCATACTTTTAGTTCGTTCTTGTATCG TTTCCGCAAACACCTGAATGTGGTGAAGCTAGAGATTAATGAGATAAAAG ATGGAGCTCTAACGAGAGTTTATATCTTCAGAAGCTTATGACTGGTTTGG TCTTTCGTCTCACTTTTAAACGACAGAGAGATCAACTCAACTCAAAATAA TGTATTAGATGAGTCAATGATACGTATACCAGATTCTACGAAGAAGCTTA TTGTGTGGATTTTCTTCTTAAAGCTCTATGTGTAAATGATTGTGGACCCG ATTGTGGGCTTTAAATTTTTCCGGATAACGCTGAATGTTTCATTGGTGAG TCTTCATGGAAGAATTTGTAGGGTTATTTATGCAAGATGTAATTTGATTC GACTTTCATGGTATTCGATTCGGATGGAAACTTTTAAAGGAATATAGAAA TTAACTATATACATCAATTCTAATGCTGTTGCTGTTAATGTGGCAAATAC AAAACAATTGCTAGTTCAACTTGAGACGAACTGAATGTAAATGAATGTGT AAATATTGTGAATAGTATTTACTGACATTTAGTCTCAAGAATgagaaaac gagaaaaaaatgCTGATTTGAAAAGTTAGGAGTgccattttagaaatttt gactTTAGCCCCTCCATCCAGAAAATCTTTCCCATGTTTTGGTCCAATTG AAATTTATTGTCAAATTTCCTTAACCTTTAGATATTTGTTCGAAGAAGGG CTGTTTACTGGCCCTCCACCAGCTGGCAATAGCTTAGAACCACTGCATGT TTGGCACTAAACTTTTGTAATCCTCCAAggatttttggaaagttttcttc gattttcgaaaacttttaatCAGTGTATTTTTAGCCTGAGATCCGATGTT AAAAATTTGATGTGGTTATTCTAATTTCGCGAGTCGGCAANCATCAGGGT ATTTTTAGCCTGAGATCCGATGTTAAACATTTGATGTGGTTATTCTAATT TCGCGAGTCGGCAATTTCACGTGATTTTGgagttttattttcgcgaaaaa ggaaaaatttcgtAAAagcactacatgttttttttataagcaagtgtatg ccct

Coding sequence (CDS) from alignment at scaffold_9:248197..249700+

>TCONS_00073310 ID=TCONS_00073310|Name=TCONS_00073310|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_9:248197..249700+ (Clytia hemisphaerica)
atgttaTTCACATTAAAAGAATTGGAGAAATGGCTACAAGTGACCATCTT
TGAGATCACGATCGCATGTGCATCCGCCCTTGTTTTTTCATTACTGTTGG
CGTTGAAACTTGAAAACGTTCTAGACGCTTCATGGTGGACAATTTTCACA
CCCTTATACGCCTGTGATACACTGATTGCTTACTTTGATTTGATCGTCTT
CATACATTTGTATAAAGCGAACGAACGACAGATGGCGGTCAAACGAATCA
TGATCAACACTACCATTATACTTTTGTTGATTATTTACAAAGTGTTGCTA
TGCCAACAATTGGAAGGCATAAAGCAAATGAGATATTCGACCATCCATTC
GCCCTTGTTCATTTTATTCTTCATACTTTTAGTTCGTTCTTGTATCGTTT
CCGCAAACACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045479XLOC_045479Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073310-proteinTCONS_00073310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073310-exon-scaffold_9-1491911889:248197..249464TCONS_00073310-exon-scaffold_9-1491911889:248197..249464Clytia hemisphaericaexon
TCONS_00073310-exon-scaffold_9-1510915933:248197..249464TCONS_00073310-exon-scaffold_9-1510915933:248197..249464Clytia hemisphaericaexon
TCONS_00073310-exon-scaffold_9-1575043694:248197..249464TCONS_00073310-exon-scaffold_9-1575043694:248197..249464Clytia hemisphaericaexon
TCONS_00073310-exon-scaffold_9-1491911889:249539..249700TCONS_00073310-exon-scaffold_9-1491911889:249539..249700Clytia hemisphaericaexon
TCONS_00073310-exon-scaffold_9-1510915933:249539..249700TCONS_00073310-exon-scaffold_9-1510915933:249539..249700Clytia hemisphaericaexon
TCONS_00073310-exon-scaffold_9-1575043694:249539..249700TCONS_00073310-exon-scaffold_9-1575043694:249539..249700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:248197..249700 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.5019 32.3296 19.2788 14.3874 6.58292 4.39685 4.48278 5.59563 4.70116 3.24519 2.85548 2.92205 1.60393 1.60549 2.35938 2.51426 4.3843 3.77834 2.25479 2.68269 3.03407 2.67207 19.123 15.326 6.23929 5.20647 2.39052 2.63627 10.1588 10.3502
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019396TM_Fragile-X-F-assoc
Blast
BLAST of TCONS_00073310 vs. Swiss-Prot (Human)
Match: TM203 (Transmembrane protein 203 OS=Homo sapiens GN=TMEM203 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.215e-16
Identity = 55/136 (40.44%), Postives = 91/136 (66.91%), Query Frame = 3
Query:   54 MLFTLKELEKWLQVTIFEITIXXXXXXXXXXXXXXXXENVLDA-SWWTIFTPLYACDTLIAYFDLIVFIHLYKANERQMAVKRXXXXXXXXXXXXXXXXXXCQQL-EGIKQMRYSTIHSPLFILFFILLVRSCIVS 455
            MLF+L+EL +WL    FEI +   + LVFS+LLAL+++ ++   SWW +F P +A D L  YF  IV + L++  E+++AV R+    T++ L  ++++LLCQ+L E  +++ +  I SPLFIL  +L++R+C V+
Sbjct:    1 MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSPLFILLQLLMIRACRVN 136          
The following BLAST results are available for this feature:
BLAST of TCONS_00073310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2031.215e-1640.44Transmembrane protein 203 OS=Homo sapiens GN=TMEM2... [more]
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