Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00073310-protein ID=TCONS_00073310-protein|Name=TCONS_00073310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MLFTLKELEKWLQVTIFEITIACASALVFSLLLALKLENVLDASWWTIFT
PLYACDTLIAYFDLIVFIHLYKANERQMAVKRIMINTTIILLLIIYKVLL
CQQLEGIKQMRYSTIHSPLFILFFILLVRSCIVSANT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019396 | TM_Fragile-X-F-assoc |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR019396 | Transmembrane Fragile-X-F-associated protein | PFAM | PF10269 | Tmemb_185A | coord: 35..129
e-value: 2.0E-9
score: 37.5 |
Blast
BLAST of TCONS_00073310-protein vs. Swiss-Prot (Human)
Match: TM203 (Transmembrane protein 203 OS=Homo sapiens GN=TMEM203 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.284e-30 Identity = 55/136 (40.44%), Postives = 91/136 (66.91%), Query Frame = 0 Query: 1 MLFTLKELEKWLQVTIFEITIACASALVFSLLLALKLENVLDA-SWWTIFTPLYACDTLIAYFDLIVFIHLYKANERQMAVKRIMINTTIILLLIIYKVLLCQQL-EGIKQMRYSTIHSPLFILFFILLVRSCIVS 134
MLF+L+EL +WL FEI + + LVFS+LLAL+++ ++ SWW +F P +A D L YF IV + L++ E+++AV R+ T++ L ++++LLCQ+L E +++ + I SPLFIL +L++R+C V+
Sbjct: 1 MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSPLFILLQLLMIRACRVN 136
The following BLAST results are available for this feature:
BLAST of TCONS_00073310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| TM203 | 1.284e-30 | 40.44 | Transmembrane protein 203 OS=Homo sapiens GN=TMEM2... | [more] |
back to top
|
