TCONS_00073300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073300
Unique NameTCONS_00073300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073300 ID=TCONS_00073300|Name=TCONS_00073300|organism=Clytia hemisphaerica|type=transcript|length=2389bp
atgttgttgttgatttttgtGTTTGTCACCCTTGCTTGTTCGTCACCAGT
CCTCTCAAAACCACCTTCCATCAACTCCTCCATACGAAACCTTCAAGATG
ATCACGTGGTAGTGCTTCAACAACAAAGAACTTCTTTCAAACAAGAACAG
AAATTTCATCCACCACAACAAAGTGATGAGAACACATCAAAAACCATCCA
TAAATTACGTTTGAAATTCCGCAAACTCCGTGATCGAGTACGACAACTGG
AAGAAAAGCTGGAAAGATTGACTTTATCGCAATATAAGTCATCGTATATT
CAAGGGCCAAAGgGTGAGAAAGGTGACAGAGGACCCAGGGGACCGACAGG
TGCAAGAGGATCAATGGGTTTCCGAGGACTAACAGGACTACCAGGGCGTG
ATGGATCGTTCAGCCAACTACCATCCTGCAccccaaaacaatatttgtct
tCCAATGGAAAGAGGTTGATCTGCTTTACTTTCGagaaAGACATCCAACC
AAACAATGGTAACGGAGGAAACAGCGGAAAAGAACGATCAACGGAACAGC
CGTCGTCAGGGGGGAATACGGACGACAGTACCACCGAAGAGACAGTCAAC
CCTGATGGAGGTGTGGATGAAGGTCTGGTTGGAAAGATCGACAAATTCTC
AGAGAAAAAtcgcatccaaaatttttatgCCGATACCTGGGATTTACATT
CATTCATTTGGGATCAAAATACATATCTGGGTGTTTCCCAACTTAGCACC
CAgtcttttattttgaagaaatgGGTACAGAATGAGTTTATTGAGAAGGC
CATTCTTACGGTACCGAACGCAAGGAAATGGACGTCATTCGAATGGCAAT
CAGAGCTTTACATCGTCATCGCCTGCAACACGAAACCCGCCCCGGGCGGT
GGCGCCGCTTACTCTTATGTTTACAAAATGAAGTATGATGAAATCACTCT
TTTCCAAAGATTGGAAACCAGGACTGCTTTTGGTGTGGATGCCATTGAAA
TTGGAAATGAGCTATACCTTGTTTTCGCGTACTTGCTTGGCGTTGGGAAT
GATGCTTATTCAGATGTATTCAAATGGTCGCAAGGAGAATTCAAGAAGGA
TCACTTGATCCCTGTGACGGGTACCGACGTTGATACTTTCAGTGTGGGTT
CAGAGCATTTTGCTGCTGTTGTGGGTGTGACGTCACGTGAcccatttgtt
tatcttttgaaatataatGGAACGCAATTTGTGACCCATTACAACATTCC
GATGGATTCGCGACCGTACGGTCTTACGTTCGTCCGTACCCGGAACGAAT
ACTTCCTGGCGGTAGCGTTTTACGACTTGCGACAATCTCTCATCTTGAAG
TGGAATGGTGTGACTTTTCAAACGAACCAAAAGCTTGTTTCATCAAAGGC
GAGAGATTTCGCAACAACAACCATCAACCGAGCAGGGCGAGAAATCACGT
ATCTGGCACTTGTAAACTACGAAGGGAAACCCATCATTTATATTTATAAT
gaacaaacaaaacaatttggaaAACTCCAACAAACGAACTCTAAGTGGAC
AAGAGATATTGAATTTTTGCGTGTACCAAATAGTATTCATTTGAATTTAG
CAGTAGCTTCAACTCGAGAGATTGTGATATATAAAGGAAACACTACTTAA
AGAGATTTCTCTGGTTGAGAACATGATTTAGAGGTGCGAAAAATCATTCG
TTGGAGGTGCAAAGAACCAATCATCCAAGATTCTGAAAGGGAAATACATG
ATCGAGCAGAATGCTGTGTCTTAACCCTGTACTAAATTACACAAGCTTGA
TATCTTTGTTTCGAGATGGAAACAGTTATTATCGAATAACTGAAAAGCGA
AAATGAGCTGTCATACATTATCAGAGTTTTAAAGGATGTACAATAAATAA
ATGAATGGATAGAGGGAATGAATGAATGTATAAAAGTACAATAGCCAAAG
AATAGTTTCTATGAGGCTTTAAAATTGCATCATTGATGTTGTTGAGAGCG
AACATttaataaaaatggaaaaagctggaaaaaatcattccaaacaaaca
aagaaatgaAGTGTTGTTATCCTGCGACCGACTTTTTATCTTAATTAAAA
GTAGAATCTTCTTTTTACGTATCCATTAAAActtcaaaaggaaaaaaatt
gcaaagaatAAGACTTAAGAGATTCTTAATttatatattattatgataat
tATTTGGCATAATTATTTCATGCTCAAAATATTATGtacatattattttc
ttttatatttttaaattccaTCAATGTCACAGTATTCATCACTATTGTTT
TCTCCATTGAATCTAATACCTTCACAGTTTCCATCCACAAAAGTTAAGTC
CCAATAGACATTTGACCATCCCCATAAAATGTAAACCTG
Run BLAST on NCBI

transcript from alignment at scaffold_9:103033..108485+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073300 ID=TCONS_00073300|Name=TCONS_00073300|organism=Clytia hemisphaerica|type=transcript|length=5453bp|location=Sequence derived from alignment at scaffold_9:103033..108485+ (Clytia hemisphaerica)
atgttgttgttgatttttgtGTTTGTCACCCTTGCTTGTTCGTCACCAGT
CCTCTCAAAACCACCTTCCATCAACTCCTCCATACGAAACCTTCAAGATG
ATCACGTGGTAGTGCTTCAACAACAAAGAACTTCTTTCAAACAAGAACAG
AAATTTCATCCACCACAACAAAGTGATGAGAACACATCAAAAACCATCCA
TAAATTACGTTTGAAATTCCGCAAACTCCGTGTACGTTTGAACAACAATA
TCTGGAAAGCGTGATTTATTCCACTGCTGAGTCGCTAATTCAATTTTCTG
ATACGACTTCTGGTTCACTTAAGTAGTGTGTTATAGAGAGAGAGACTTTG
GATATACTGTGCTGGAACATTTGTACGAGTAGAAGCTCTTAATGAAGCTT
TTGCTTTTTCAGCAAGATTTCCAGTTCTGTTCGGTGAgccttttcaaatg
aaatttttattcttGTGTTTTTAGGATCGAGTACGACAACTGGAAGAAAA
GCTGNTGAgcgttttcaaatgaaatttttattcttGTGTTTTTAGGATCG
AGTACGACAACTGGAAGAAAAGCTGGAAAGATTGACTTTATCGCAATATA
AGTCATCGTATATTCAAGGGCCAAAGGTAGGAGTTGATTATATTCACTAC
AAGTTCTTGAGAGCGTGTATCAAACAACTTTGTGATACAAAGAGTGTGTT
TCCCTGGGAAAGAATCTTTGTTACCAAAAGTACGGTGTATACTGTCGAGA
TCAAAGTGTGCTCGAAGATTCAATTACTTTGGTCTAATAATAACAAAGGT
TAGAAACTTATGCACTTTGTATTTGGGGCAAACCTTGCTCAGCtttgaaa
acagaaaaaaaacaagcaacgtgattttcattttcaacttttattcatat
gaaaaattatttttaccatGAATTTAAAAATAAGATAATGTTGACCTTTC
TATATGAATCATAAAAGGTCGACgacttttcattgaaataaTTAGCACTT
GAAAGCTATTAAAAGCATAATTAATGATACTTTGGCGCCTCATCTTTGTC
AAAGAAAATTAGTCCCATATCCGCAGGGGTTGTTCATTGAACAATATCCT
TAATGATGTATCCATCACATTATTATTaccctttctttgttttccttttt
tccaggGTGAGAAAGGTGACAGAGGACCCAGGGTAAGtttgtcttttctt
tttctgcAAAATTTACTGCATTTTGAAGACCATTTTAGGTATCACTTGAG
GATAACAAACTTACTTGGCatcaattttaaggcttttcccAAAAGGCACA
AACATCTCATTAACATTCATTGACGCTCGCTATCTGGACGTCTCAAATcg
ttaaaatcatttttttttgtgttgatGAGAATAAGAGATATCAAGTTTTA
CATCGCTTTCATTGTGGCCCATgttaaacaaaagaaacctcAATTAATCT
GAGCTGTTAGTGAAAGAAACATTCAGCGAAAGCATAAGATTAGTTCAGCT
TGGTACCAAAAGTCCTGATGCAATACAAAAAACCGTTATACGCGCTTCAT
TTGATAAGCTTCTAAAAGCCTTCATGTAAATCAAAAACTCCTTCAATCAA
ATTATAATGCCATGGTGACAAAGGCATCAACATGACGTCAGATGAATGTC
TCAGAGACATAACTTTTGTGATGTCATCAACAAAAGTGTCCTTTATACCA
CCGCGTAGTCAATAAGCATCTTAATTCAATTTTTGGTACTTTCTTGaaat
agcattttttacaaaagagtGAATAGACAATGATTTATGTTTTCTTATGA
CAGTAAAGCTTTTAGCTTGCTCGTGTCAGGGCGCCAATGCAAATTGATTG
ATCGATCTGGTTcaattaaaactcaaaaagatcATCCAGTAGCATACCCT
TTTTGTCTCGTAAGCCGCTTTTTTGGCCaggaaatttctttcaataaacT
AGACTCGCCTTTACCATTTGCTCAATACAAAGGAAGAGAATTCGATTTCC
AGAATAGTCCATTTCTCACTTGAGAAATCAAATCATACAAAGCTGAACTA
AACGtttatttcatttcattcaGGGACCGACAGGTGCAAGAGGATCAATG
GGTTTCCGAGGACTAACAGGACTACCAGGGCGTGATGGATCGTTCAGCCA
ACTACCATCCTGCAccccaaaacaatatttgtcttCCAATGGAAAGAGGT
TGATCTGCTTTACTTTCGGTAAGTGAAATTTCGCTTCAATTGTTATATAG
TTTCAATCTCATCATCATATATGTCCAAAATGGTTCTGCTTTGTGTAAGC
CAAAACAAATAAAAGTGCTCAATGTTAATGATAACAGAGCTTTatactag
tttgagtaaagaaaacgattaaagttaatttcaaactcaaaatgCCAAAA
TGGTTCTTCCAACATGAGATCTTTGAAGTAAACAAATTTCTTAATCAGAT
TTTATAAAAGTGGCGTACCACTCACTGACTTGAAATCACTACCAGTGATA
CCTCTACATATGTTAACAAGATGCTCCATTAAAAATATAAGTCCttgaat
aaattgaaattgaaacaacATGGCTATCTTGACGTCGAACAAACTAATTC
TCGAtatgaatttttcattttcagagaaAGACATCCAACCAAACAATGGT
AACGGAGGAAACAGCGGAAAAGAACGATCAACGGAACAGCCGTCGTCAGG
GGGGAATACGGACGACAGTACCACCGAAGAGACAGTCAACCCTGATGGAG
GTGTGGATGAAGGTAATGGAATAAGGCTACCGAACCCAACTATAAACGAG
GGTAAGAACTCATCCTCAACTCTTACACAACACACTAACCCCTCTAACAC
TTTAAACCTTGTCTTGTTGAGAATAATCTCTAACTAACCTTGTTAAGTAT
TAATCTATTCAAGCTATGTTTTCGCTTAAAAAACTAGATTGACGAAGGAA
ACATTTTTGGCCACAAAGTCTGCACACAGCAAGATTATTCATATTCCAAA
AATAACCGAATATAACTCCTCTTTACAGGTCTGGTTGGAAAGATCGACAA
ATTCTCAGAGAAAAAtcgcatccaaaatttttatgCCGATACCTGGGATT
TACATTCATTCATTTGGGATCAAAATACATATCTGGGTGTTTCCCAACTT
AGCACCCAgtcttttattttgaagaaatgGGTACAGAATGAGTAAGTATC
TTACAGGTTAAAAAGAGGTGGTCTAGCATTAAAGCTTCAATTTCCTGATG
ACAAAGAATAATTTGCCATCAATTTTTATGCCATCTCTTATGTTCACGAC
TTGGAAACGTCATAATCATATCCCGTTTTAATAGTGAATCCTGACTAATT
TCAAAGGCCATAAAACTGTATAAGGATTACTTTTTTAGAAGAAGAAGATT
ATTCACAATTTAGTAATTATTTCAACCATTTCACACAACACAGGTTTATT
GAGAAGGCCATTCTTACGGTACCGAACGCAAGGAAATGGACGTCATTCGA
ATGGCAATCAGAGCTTTACATCGTCATCGCCTGCAACACGAAACCCGCCC
CGGGCGGTGGCGCCGCTTACTCTTATGTTTACAAAATGAAGTATGATGAA
ATCACTCTTTTCCAAAGATTGGAAACCAGGACTGCTTTTGGTGTGGATGC
CATTGAAATTGGTGAGTTGTTAACATGAGAAAATTGATATAGATATGAAA
GATGCTAGACTCTTTTTTTCTTCCATAAAGATAACTATAATATACAACGA
ATACATTAAAACTAGATATTTGTAAGTGGAATTCGTAATCATTGAGACTG
AAAATATTATGGCGCATTTGATTTCTAATCATAATTTTCTCTTTTCATGA
ACAGGAAATGAGCTATACCTTGTTTTCGCGTACTTGCTTGGCGTTGGGAA
TGATGCTTATTCAGATGTATTCAAATGGTCGCAAGGAGAATTCAAGAAGG
ATCACTTGATCCCTGTGACGGGTACCGACGTTGATACTTTCAGTGTGGGT
TCAGAGCATTTTGCTGCTGTTGTGGGTGTGACGTCACGTGAcccatttgt
ttatcttttgaaatataatGGAACGCAATTTGTGACCCATTACAACATTC
CGATGGATTCGCGACCGTACGGTCTTACGTTCGTCCGTACCCGGAACGAA
TACTTCCTGGCGGTAGCGTTTTACGACTTGCGACAATCTCTCATCTTGAA
GTGGAATGGTGTGACTTTTCAAACGAACCAAAAGCTTGTTTCATCAAAGG
TAAAATTCATATCACCATCAGTCCTCTGACCGGCAGAGAATCAAATTACT
CTCCGAGCTATTTAATTCCACACAACGAATAAGAGAAAGATCAGCATCCT
AGGTCACAAAAATCTTACTACTTGAAATAAATCTCAAAGCCATGAATTAA
CGGAATAATGATGAGTAGAATCAGTGCATGATTTCCTCAACCCTTTTCTT
TTCGTTTTATAGGCGAGAGATTTCGCAACAACAACCATCAACCGAGCAGG
GCGAGAAATCACGTATCTGGCACTTGTAAACTACGAAGGGAAACCCATCA
TTTATATTTATAATgaacaaacaaaacaatttggaaAACTCCAACAAACG
AACTCTAAGTGGACAAGAGATATTGAATTTTTGCGTGTACCAAATAGTAT
TCATTTGAATTTAGCAGTAGCTTCAACTCGAGAGATTGTGATATATAAAG
GAAACACTACTTAAAGAGATTTCTCTGGTTGAGAACATGATTTAGAGGTG
CGAAAAATCATTCGTTGGAGGTGCAAAGAACCAATCATCCAAGATTCTGA
AAGGGAAATACATGATCGAGCAGAATGCTGTGTCTTAACCCTGTACTAAA
TTACACAAGCTTGATATCTTTGTTTCGAGATGGAAACAGTTATTATCGAA
TAACTGAAAAGCGAAAATGAGCTGTCATACATTATCAGAGTTTTAAAGGA
TGTACAATAAATAAATGAATGGATAGAGGGAATGAATGAATGTATAAAAG
TACAATAGCCAAAGAATAGTTTCTATGAGGCTTTAAAATTGCATCATTGA
TGTTGTTGAGAGCGAACATttaataaaaatggaaaaagctggaaaaaatc
attccaaacaaacaaagaaatgaAGTGTTGTTATCCTGCGACCGACTTTT
TATCTTAATTAAAAGTAGAATCTTCTTTTTACGTATCCATTAAAActtca
aaaggaaaaaaattgcaaagaatAAGACTTAAGAGATTCTTAATttatat
attattatgataattATTTGGCATAATTATTTCATGCTCAAAATATTATG
tacatattattttcttttatatttttaaattccaTCAATGTCACAGTATT
CATCACTATTGTTTTCTCCATTGAATCTAATACCTTCACAGTTTCCATCC
ACAAAAGTTAAGTCCCAATAGACATTTGACCATCCCCATAAAATGTAAAC
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045472XLOC_045472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073300-exon-scaffold_9-1491911889:103033..103263TCONS_00073300-exon-scaffold_9-1491911889:103033..103263Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:103033..103263TCONS_00073300-exon-scaffold_9-1510915933:103033..103263Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:103033..103263TCONS_00073300-exon-scaffold_9-1575043694:103033..103263Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:103578..103658TCONS_00073300-exon-scaffold_9-1491911889:103578..103658Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:103578..103658TCONS_00073300-exon-scaffold_9-1510915933:103578..103658Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:103578..103658TCONS_00073300-exon-scaffold_9-1575043694:103578..103658Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:104188..104214TCONS_00073300-exon-scaffold_9-1491911889:104188..104214Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:104188..104214TCONS_00073300-exon-scaffold_9-1510915933:104188..104214Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:104188..104214TCONS_00073300-exon-scaffold_9-1575043694:104188..104214Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:105106..105250TCONS_00073300-exon-scaffold_9-1491911889:105106..105250Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:105106..105250TCONS_00073300-exon-scaffold_9-1510915933:105106..105250Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:105106..105250TCONS_00073300-exon-scaffold_9-1575043694:105106..105250Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:105657..105794TCONS_00073300-exon-scaffold_9-1491911889:105657..105794Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:105657..105794TCONS_00073300-exon-scaffold_9-1510915933:105657..105794Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:105657..105794TCONS_00073300-exon-scaffold_9-1575043694:105657..105794Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:106061..106223TCONS_00073300-exon-scaffold_9-1491911889:106061..106223Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:106061..106223TCONS_00073300-exon-scaffold_9-1510915933:106061..106223Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:106061..106223TCONS_00073300-exon-scaffold_9-1575043694:106061..106223Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:106476..106693TCONS_00073300-exon-scaffold_9-1491911889:106476..106693Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:106476..106693TCONS_00073300-exon-scaffold_9-1510915933:106476..106693Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:106476..106693TCONS_00073300-exon-scaffold_9-1575043694:106476..106693Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:106887..107281TCONS_00073300-exon-scaffold_9-1491911889:106887..107281Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:106887..107281TCONS_00073300-exon-scaffold_9-1510915933:106887..107281Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:106887..107281TCONS_00073300-exon-scaffold_9-1575043694:106887..107281Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1491911889:107495..108485TCONS_00073300-exon-scaffold_9-1491911889:107495..108485Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1510915933:107495..108485TCONS_00073300-exon-scaffold_9-1510915933:107495..108485Clytia hemisphaericaexon
TCONS_00073300-exon-scaffold_9-1575043694:107495..108485TCONS_00073300-exon-scaffold_9-1575043694:107495..108485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:103033..108485 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0906963	0.000396385	3.8719e-10	8.88052e-10	0	1.15147e-07	8.09994e-10	0	0	5.62209e-10	0.00275149	0	0	3.22761	3.40844	2.04049	0.00641262	4.02373	2.52907	1.48854	1.90631	2.48499	3.36667	32.0227	29.4866	0.38065	0.883364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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