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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073281 ID=TCONS_00073281|Name=TCONS_00073281|organism=Clytia hemisphaerica|type=transcript|length=1554bp
cccccccccggtttcgccggccctgcagtacagccctcactaaccggtca
ttattacATTGGTACTTACTTTGTGCataacctcccccccccctcgggGA
CACGTTTATAAGAGACAAAATATATACCAAAAAGCGTGTAGTTGACACCA
TTGTGCATTACTTAATCATTTTACTTTTGGTATTTGCTTCTATGAAGTCT
CTGAGTCTTGATATCTCTTTACGCTAAATATCTTTCCTTAACCCGTCTAA
ctaatgaaaataatgaaaagttATTTGACCATTCCTAAATACTGCGGTGC
CAAAATGACTGTAGACTAATAAACTCGTCATAATCTTGTTTGAGGGTTCC
TGACTGAAGAGAGATATCTCGTCATCGGTTGTTAAAAGGTTAAAAGTAGc
tcaaaaaaagtaaataaggTTCTTAAATTTCAGGAATCAATCTTGAAGAT
TCTTTGGAATACATCCTCATGCATTGATCACGTGTTTGAATAATAGCACC
ATCTTGAATCAGCCTCATTTCACAGATCTCCCGAACGTCAAACGAAATAA
AATTGGATAAAGGCCATACATCAATACCACTTTGTAGCACCAGCTCACCA
ATATAAACATCAGGATTAGGATGTggttttgaccaatggaatttaCGAAT
CCCACTGTCAACGACATCAAAAGACATTAGATACGCATTCTCGATAAAAC
GTGGATAACCTTTAATTAGTGTCTTTTTAGCACTATGGAAAGTCGTGGTT
CGGTTTGAATCATACACTACATGCCCAGCGTACAGTTCAGTGCTAGGTAT
TCTTGGGTCAGACAGTAAGGAGAACATCTTGGGTGTGTTTAAGAACATAT
GACTTTTAATTCTAGCCAGGAAGGTGAACTCACAATTTTGGTCAACCCAC
TCCATACTTGCCATGAGTTTTAATGTCTCTTTCCGTGATGAACTTGACCA
AAAtccaatgacgtcattatgACGTAATTGCTCTTCTTTGAAAGCAGCTC
GTTCAGCTAGCCCGTTTGGCACGTCAACAACAAATACAATTTTCCAGTCT
AGAGATTTCATGCCGTCTGAAGTCAAGATTCGCTCCTTCTCTGATGCCCA
TGTCTGTCGATACAGATTTCTTCTTGTCGTATTTGTATTATCGAGACAAA
GCACCAAAAGTTGGTACGGATTTCTACATATTCCTGTCTCGATTTGCCTG
TTGTTACCATGGTAAATATAATCTCGATGGTATGGTTTCGATTCATCAGG
TTTGATATCAGCTTTTTGAATATCCGAGTCAAATTGTTTAATCAAGTCCA
TCGATAAAGATTGAGTTTGCTCGATTAATTTTTCGATCTCTTGTGAATTA
CTGTTTTGCGAGTTTGCGTCAGACAGATGatattttgagcttttttttgA
AGTAATTTTGACTTGAATGCGATTATCAGCCCCTGTTCCGATGTCTAGCC
TTTCTTCTTGATGATTTAAAGTCCAAACATATATgaatccaatcaaaaca
aagaatatGATACATATTGTGTATAACACTGTTTTGgaccaatttctttt
ttct Run BLAST on NCBI protein sequence of TCONS_00073281-protein >TCONS_00073281-protein ID=TCONS_00073281-protein|Name=TCONS_00073281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
EKRNWSKTVLYTICIIFFVLIGFIYVWTLNHQEERLDIGTGADNRIQVKI
TSKKSSKYHLSDANSQNSNSQEIEKLIEQTQSLSMDLIKQFDSDIQKADI
KPDESKPYHRDYIYHGNNRQIETGICRNPYQLLVLCLDNTNTTRRNLYRQ
TWASEKERILTSDGMKSLDWKIVFVVDVPNGLAERAAFKEEQLRHNDVIG
FWSSSSRKETLKLMASMEWVDQNCEFTFLARIKSHMFLNTPKMFSLLSDP
RIPSTELYAGHVVYDSNRTTTFHSAKKTLIKGYPRFIENAYLMSFDVVDS
GIRKFHWSKPHPNPDVYIGELVLQSGIDVWPLSNFISFDVREICEMRLIQ
DGAIIQTRDQCMRMYSKESSRLIPEI Run BLAST on NCBI transcript from alignment at scaffold_89:155406..156959 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073281 ID=TCONS_00073281|Name=TCONS_00073281|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at scaffold_89:155406..156959 (Clytia hemisphaerica)
agaaaaaagaaattggtcCAAAACAGTGTTATACACAATATGTATCatat
tctttgttttgattggattcATATATGTTTGGACTTTAAATCATCAAGAA
GAAAGGCTAGACATCGGAACAGGGGCTGATAATCGCATTCAAGTCAAAAT
TACTTcaaaaaaaagctcaaaatatCATCTGTCTGACGCAAACTCGCAAA
ACAGTAATTCACAAGAGATCGAAAAATTAATCGAGCAAACTCAATCTTTA
TCGATGGACTTGATTAAACAATTTGACTCGGATATTCAAAAAGCTGATAT
CAAACCTGATGAATCGAAACCATACCATCGAGATTATATTTACCATGGTA
ACAACAGGCAAATCGAGACAGGAATATGTAGAAATCCGTACCAACTTTTG
GTGCTTTGTCTCGATAATACAAATACGACAAGAAGAAATCTGTATCGACA
GACATGGGCATCAGAGAAGGAGCGAATCTTGACTTCAGACGGCATGAAAT
CTCTAGACTGGAAAATTGTATTTGTTGTTGACGTGCCAAACGGGCTAGCT
GAACGAGCTGCTTTCAAAGAAGAGCAATTACGTcataatgacgtcattgg
aTTTTGGTCAAGTTCATCACGGAAAGAGACATTAAAACTCATGGCAAGTA
TGGAGTGGGTTGACCAAAATTGTGAGTTCACCTTCCTGGCTAGAATTAAA
AGTCATATGTTCTTAAACACACCCAAGATGTTCTCCTTACTGTCTGACCC
AAGAATACCTAGCACTGAACTGTACGCTGGGCATGTAGTGTATGATTCAA
ACCGAACCACGACTTTCCATAGTGCTAAAAAGACACTAATTAAAGGTTAT
CCACGTTTTATCGAGAATGCGTATCTAATGTCTTTTGATGTCGTTGACAG
TGGGATTCGtaaattccattggtcaaaaccACATCCTAATCCTGATGTTT
ATATTGGTGAGCTGGTGCTACAAAGTGGTATTGATGTATGGCCTTTATCC
AATTTTATTTCGTTTGACGTTCGGGAGATCTGTGAAATGAGGCTGATTCA
AGATGGTGCTATTATTCAAACACGTGATCAATGCATGAGGATGTATTCCA
AAGAATCTTCAAGATTGATTCCTGAAATTTAAGAAccttatttacttttt
ttgagCTACTTTTAACCTTTTAACAACCGATGACGAGATATCTCTCTTCA
GTCAGGAACCCTCAAACAAGATTATGACGAGTTTATTAGTCTACAGTCAT
TTTGGCACCGCAGTATTTAGGAATGGTCAAATaacttttcattattttca
ttagTTAGACGGGTTAAGGAAAGATATTTAGCGTAAAGAGATATCAAGAC
TCAGAGACTTCATAGAAGCAAATACCAAAAGTAAAATGATTAAGTAATGC
ACAATGGTGTCAACTACACGCTTTTTGGTATATATTTTGTCTCTTATAAA
CGTGTCcccgaggggggggggaggttatGCACAAAGTAAGTACCAATgta
ataatgaccggttagtgagggctgtactgcagggccggcgaaaccggggg
gggg Coding sequence (CDS) from alignment at scaffold_89:155406..156959 >TCONS_00073281 ID=TCONS_00073281|Name=TCONS_00073281|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at scaffold_89:155406..156959 (Clytia hemisphaerica)
gaaaaaagaaattggtcCAAAACAGTGTTATACACAATATGTATCatatt
ctttgttttgattggattcATATATGTTTGGACTTTAAATCATCAAGAAG
AAAGGCTAGACATCGGAACAGGGGCTGATAATCGCATTCAAGTCAAAATT
ACTTcaaaaaaaagctcaaaatatCATCTGTCTGACGCAAACTCGCAAAA
CAGTAATTCACAAGAGATCGAAAAATTAATCGAGCAAACTCAATCTTTAT
CGATGGACTTGATTAAACAATTTGACTCGGATATTCAAAAAGCTGATATC
AAACCTGATGAATCGAAACCATACCATCGAGATTATATTTACCATGGTAA
CAACAGGCAAATCGAGACAGGAATATGTAGAAATCCGTACCAACTTTTGG
TGCTTTGTCTCGATAATACAAATACGACAAGAAGAAATCTGTATCGACAG
ACATGGGCATCAGAGAAGGAGCGAATCTTGACTTCAGACGGCATGAAATC
TCTAGACTGGAAAATTGTATTTGTTGTTGACGTGCCAAACGGGCTAGCTG
AACGAGCTGCTTTCAAAGAAGAGCAATTACGTcataatgacgtcattgga
TTTTGGTCAAGTTCATCACGGAAAGAGACATTAAAACTCATGGCAAGTAT
GGAGTGGGTTGACCAAAATTGTGAGTTCACCTTCCTGGCTAGAATTAAAA
GTCATATGTTCTTAAACACACCCAAGATGTTCTCCTTACTGTCTGACCCA
AGAATACCTAGCACTGAACTGTACGCTGGGCATGTAGTGTATGATTCAAA
CCGAACCACGACTTTCCATAGTGCTAAAAAGACACTAATTAAAGGTTATC
CACGTTTTATCGAGAATGCGTATCTAATGTCTTTTGATGTCGTTGACAGT
GGGATTCGtaaattccattggtcaaaaccACATCCTAATCCTGATGTTTA
TATTGGTGAGCTGGTGCTACAAAGTGGTATTGATGTATGGCCTTTATCCA
ATTTTATTTCGTTTGACGTTCGGGAGATCTGTGAAATGAGGCTGATTCAA
GATGGTGCTATTATTCAAACACGTGATCAATGCATGAGGATGTATTCCAA
AGAATCTTCAAGATTGATTCCTGAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073281-exon-scaffold_89-1491911889:155406..156959 | TCONS_00073281-exon-scaffold_89-1491911889:155406..156959 | Clytia hemisphaerica | exon |
| TCONS_00073281-exon-scaffold_89-1510915933:155406..156959 | TCONS_00073281-exon-scaffold_89-1510915933:155406..156959 | Clytia hemisphaerica | exon |
| TCONS_00073281-exon-scaffold_89-1575043694:155406..156959 | TCONS_00073281-exon-scaffold_89-1575043694:155406..156959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:155406..156959 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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