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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=transcript|length=1412bp
ttaatttatttaaatttatcctacacgttttttatataagaacaaactat
ataagaacataaggcttcgatggctaaaatgttaagaacattttaagact
tacAAACTCAAGAACActgaatttcataggaaaatgggcaaaattattca
aataatggcgaaaataagaacatgttaagaacatttttaggcttaaagaa
catcccaaggcttcaaaatttttggatgttcttataagacATACATGTAT
CCTAGTTATAATCCCTGTACAATACTTTAGCACATTTTTCACTAGCATCA
TAATTTTGTATaaactttttgtcattttcacaACATAAAAATTTGCAGCG
AAGttttttcgtaaaatttgtTACATTTTGTGCTTGTATTCCATACCCCA
TTGCAGCTGCAGCTACCATTATGTCTTGATTAAGTGATCGAAAATTGCTA
AGATAAGATAAATCATTTATTATGGTTTCCAAGGTGACACGTGACAATAT
GGCAGAACGTCCTTGAATATATTCAACCCATTCTGCTTTCCTATATTTTT
TCTGTGAACGATCTAGACTAGGAAGCTGGATTTCTTTCTTAGCCAAGCTA
CCAGCAAACAGAAATCTCTCATTGTGAGCATCTGATGATACAAAGTTATA
CAGAGCTGGAAGATTGACAAAATTGTGTGCAGTTGTGTACATGATGTATT
TGAAATTACAATTGTTCAGTACCCATCGAAGGGCGGAATATAATTTCAAC
GCCCTCTTTGTGTGATGTTCTTGGATTTCAACTTCTAATATATCTGGTTG
CATTCTAAGTTCAGTTTCGACGAAAGAGGCGCCCGCCCATTCTTCTCCAC
CCCGACTAATCACGAACAGTTTGCGCCACTTGAATTCTTTATATTGATTA
TTCTGTCTGATATATTTAGCAGTTGGGGCGTGTTTATCCGCCCATGTCTT
CCGAATATCCATACGTAACGCGAGTTCTTTGTATTCGCTTAAAACGAGTA
TCAACACTTTCAGAGTCGTTGTTCCACAAAGAAGCTGTCCTTTATCGTTG
TGTAAAAACATTCCCGTATCTTGGCTTTTCCGAACCAAGTGCGTAACCGG
TGTTTCAATAATTTTTGTGTTCTTTTTAAAACTTGTCAATAATGATACTT
TCAAGGAAGATAATAAGTTGTAGGTGAAATCGAATGTCGAGGAGAGCTCT
ATTTTTCCTTTGTTGTCATATTGATATAAATGTCCATTGAAATCAAGGGT
CGACCCAAACTCAGACATCAACTTATAGTGATAAAAATTAAGTGCAATAA
AAATGGCTCcgaaaaagaaaatacaaaagaaaattataaaatttcgtCTT
TTCTTAAAAATCCATAATCGTTTCAAACTTGTCGCTATTtcgtccgccat
ctttgtttacac Run BLAST on NCBI protein sequence of TCONS_00073280-protein >TCONS_00073280-protein ID=TCONS_00073280-protein|Name=TCONS_00073280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MADEIATSLKRLWIFKKRRNFIIFFCIFFFGAIFIALNFYHYKLMSEFGS
TLDFNGHLYQYDNKGKIELSSTFDFTYNLLSSLKVSLLTSFKKNTKIIET
PVTHLVRKSQDTGMFLHNDKGQLLCGTTTLKVLILVLSEYKELALRMDIR
KTWADKHAPTAKYIRQNNQYKEFKWRKLFVISRGGEEWAGASFVETELRM
QPDILEVEIQEHHTKRALKLYSALRWVLNNCNFKYIMYTTAHNFVNLPAL
YNFVSSDAHNERFLFAGSLAKKEIQLPSLDRSQKKYRKAEWVEYIQGRSA
ILSRVTLETIINDLSYLSNFRSLNQDIMVAAAAMGYGIQAQNVTNFTKKL
RCKFLCCENDKKFIQNYDASEKCAKVLYRDYN Run BLAST on NCBI transcript from alignment at scaffold_89:150677..152088 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=transcript|length=1412bp|location=Sequence derived from alignment at scaffold_89:150677..152088 (Clytia hemisphaerica)
gtgtaaacaaagatggcggacgaAATAGCGACAAGTTTGAAACGATTATG
GATTTTTAAGAAAAGacgaaattttataattttcttttgtattttctttt
tcgGAGCCATTTTTATTGCACTTAATTTTTATCACTATAAGTTGATGTCT
GAGTTTGGGTCGACCCTTGATTTCAATGGACATTTATATCAATATGACAA
CAAAGGAAAAATAGAGCTCTCCTCGACATTCGATTTCACCTACAACTTAT
TATCTTCCTTGAAAGTATCATTATTGACAAGTTTTAAAAAGAACACAAAA
ATTATTGAAACACCGGTTACGCACTTGGTTCGGAAAAGCCAAGATACGGG
AATGTTTTTACACAACGATAAAGGACAGCTTCTTTGTGGAACAACGACTC
TGAAAGTGTTGATACTCGTTTTAAGCGAATACAAAGAACTCGCGTTACGT
ATGGATATTCGGAAGACATGGGCGGATAAACACGCCCCAACTGCTAAATA
TATCAGACAGAATAATCAATATAAAGAATTCAAGTGGCGCAAACTGTTCG
TGATTAGTCGGGGTGGAGAAGAATGGGCGGGCGCCTCTTTCGTCGAAACT
GAACTTAGAATGCAACCAGATATATTAGAAGTTGAAATCCAAGAACATCA
CACAAAGAGGGCGTTGAAATTATATTCCGCCCTTCGATGGGTACTGAACA
ATTGTAATTTCAAATACATCATGTACACAACTGCACACAATTTTGTCAAT
CTTCCAGCTCTGTATAACTTTGTATCATCAGATGCTCACAATGAGAGATT
TCTGTTTGCTGGTAGCTTGGCTAAGAAAGAAATCCAGCTTCCTAGTCTAG
ATCGTTCACAGAAAAAATATAGGAAAGCAGAATGGGTTGAATATATTCAA
GGACGTTCTGCCATATTGTCACGTGTCACCTTGGAAACCATAATAAATGA
TTTATCTTATCTTAGCAATTTTCGATCACTTAATCAAGACATAATGGTAG
CTGCAGCTGCAATGGGGTATGGAATACAAGCACAAAATGTAacaaatttt
acgaaaaaaCTTCGCTGCAAATTTTTATGTtgtgaaaatgacaaaaagtt
tATACAAAATTATGATGCTAGTGAAAAATGTGCTAAAGTATTGTACAGGG
ATTATAACTAGGATACATGTATgtcttataagaacatccaaaaattttga
agccttgggatgttctttaagcctaaaaatgttcttaacatgttcttatt
ttcgccattatttgaataattttgcccattttcctatgaaattcagTGTT
CTTGAGTTTgtaagtcttaaaatgttcttaacattttagccatcgaagcc
ttatgttcttatatagtttgttcttatataaaaaacgtgtaggataaatt
taaataaattaa Coding sequence (CDS) from alignment at scaffold_89:150677..152088 >TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_89:150677..152088 (Clytia hemisphaerica)
atggcggacgaAATAGCGACAAGTTTGAAACGATTATGGATTTTTAAGAA
AAGacgaaattttataattttcttttgtattttctttttcgGAGCCATTT
TTATTGCACTTAATTTTTATCACTATAAGTTGATGTCTGAGTTTGGGTCG
ACCCTTGATTTCAATGGACATTTATATCAATATGACAACAAAGGAAAAAT
AGAGCTCTCCTCGACATTCGATTTCACCTACAACTTATTATCTTCCTTGA
AAGTATCATTATTGACAAGTTTTAAAAAGAACACAAAAATTATTGAAACA
CCGGTTACGCACTTGGTTCGGAAAAGCCAAGATACGGGAATGTTTTTACA
CAACGATAAAGGACAGCTTCTTTGTGGAACAACGACTCTGAAAGTGTTGA
TACTCGTTTTAAGCGAATACAAAGAACTCGCGTTACGTATGGATATTCGG
AAGACATGGGCGGATAAACACGCCCCAACTGCTAAATATATCAGACAGAA
TAATCAATATAAAGAATTCAAGTGGCGCAAACTGTTCGTGATTAGTCGGG
GTGGAGAAGAATGGGCGGGCGCCTCTTTCGTCGAAACTGAACTTAGAATG
CAACCAGATATATTAGAAGTTGAAATCCAAGAACATCACACAAAGAGGGC
GTTGAAATTATATTCCGCCCTTCGATGGGTACTGAACAATTGTAATTTCA
AATACATCATGTACACAACTGCACACAATTTTGTCAATCTTCCAGCTCTG
TATAACTTTGTATCATCAGATGCTCACAATGAGAGATTTCTGTTTGCTGG
TAGCTTGGCTAAGAAAGAAATCCAGCTTCCTAGTCTAGATCGTTCACAGA
AAAAATATAGGAAAGCAGAATGGGTTGAATATATTCAAGGACGTTCTGCC
ATATTGTCACGTGTCACCTTGGAAACCATAATAAATGATTTATCTTATCT
TAGCAATTTTCGATCACTTAATCAAGACATAATGGTAGCTGCAGCTGCAA
TGGGGTATGGAATACAAGCACAAAATGTAacaaattttacgaaaaaaCTT
CGCTGCAAATTTTTATGTtgtgaaaatgacaaaaagtttATACAAAATTA
TGATGCTAGTGAAAAATGTGCTAAAGTATTGTACAGGGATTATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073280-exon-scaffold_89-1491911889:150677..152088 | TCONS_00073280-exon-scaffold_89-1491911889:150677..152088 | Clytia hemisphaerica | exon |
| TCONS_00073280-exon-scaffold_89-1510915933:150677..152088 | TCONS_00073280-exon-scaffold_89-1510915933:150677..152088 | Clytia hemisphaerica | exon |
| TCONS_00073280-exon-scaffold_89-1575043694:150677..152088 | TCONS_00073280-exon-scaffold_89-1575043694:150677..152088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:150677..152088 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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