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TCONS_00073280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073280
Unique NameTCONS_00073280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=transcript|length=1412bp
ttaatttatttaaatttatcctacacgttttttatataagaacaaactat
ataagaacataaggcttcgatggctaaaatgttaagaacattttaagact
tacAAACTCAAGAACActgaatttcataggaaaatgggcaaaattattca
aataatggcgaaaataagaacatgttaagaacatttttaggcttaaagaa
catcccaaggcttcaaaatttttggatgttcttataagacATACATGTAT
CCTAGTTATAATCCCTGTACAATACTTTAGCACATTTTTCACTAGCATCA
TAATTTTGTATaaactttttgtcattttcacaACATAAAAATTTGCAGCG
AAGttttttcgtaaaatttgtTACATTTTGTGCTTGTATTCCATACCCCA
TTGCAGCTGCAGCTACCATTATGTCTTGATTAAGTGATCGAAAATTGCTA
AGATAAGATAAATCATTTATTATGGTTTCCAAGGTGACACGTGACAATAT
GGCAGAACGTCCTTGAATATATTCAACCCATTCTGCTTTCCTATATTTTT
TCTGTGAACGATCTAGACTAGGAAGCTGGATTTCTTTCTTAGCCAAGCTA
CCAGCAAACAGAAATCTCTCATTGTGAGCATCTGATGATACAAAGTTATA
CAGAGCTGGAAGATTGACAAAATTGTGTGCAGTTGTGTACATGATGTATT
TGAAATTACAATTGTTCAGTACCCATCGAAGGGCGGAATATAATTTCAAC
GCCCTCTTTGTGTGATGTTCTTGGATTTCAACTTCTAATATATCTGGTTG
CATTCTAAGTTCAGTTTCGACGAAAGAGGCGCCCGCCCATTCTTCTCCAC
CCCGACTAATCACGAACAGTTTGCGCCACTTGAATTCTTTATATTGATTA
TTCTGTCTGATATATTTAGCAGTTGGGGCGTGTTTATCCGCCCATGTCTT
CCGAATATCCATACGTAACGCGAGTTCTTTGTATTCGCTTAAAACGAGTA
TCAACACTTTCAGAGTCGTTGTTCCACAAAGAAGCTGTCCTTTATCGTTG
TGTAAAAACATTCCCGTATCTTGGCTTTTCCGAACCAAGTGCGTAACCGG
TGTTTCAATAATTTTTGTGTTCTTTTTAAAACTTGTCAATAATGATACTT
TCAAGGAAGATAATAAGTTGTAGGTGAAATCGAATGTCGAGGAGAGCTCT
ATTTTTCCTTTGTTGTCATATTGATATAAATGTCCATTGAAATCAAGGGT
CGACCCAAACTCAGACATCAACTTATAGTGATAAAAATTAAGTGCAATAA
AAATGGCTCcgaaaaagaaaatacaaaagaaaattataaaatttcgtCTT
TTCTTAAAAATCCATAATCGTTTCAAACTTGTCGCTATTtcgtccgccat
ctttgtttacac
Run BLAST on NCBI

protein sequence of TCONS_00073280-protein

>TCONS_00073280-protein ID=TCONS_00073280-protein|Name=TCONS_00073280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MADEIATSLKRLWIFKKRRNFIIFFCIFFFGAIFIALNFYHYKLMSEFGS
TLDFNGHLYQYDNKGKIELSSTFDFTYNLLSSLKVSLLTSFKKNTKIIET
PVTHLVRKSQDTGMFLHNDKGQLLCGTTTLKVLILVLSEYKELALRMDIR
KTWADKHAPTAKYIRQNNQYKEFKWRKLFVISRGGEEWAGASFVETELRM
QPDILEVEIQEHHTKRALKLYSALRWVLNNCNFKYIMYTTAHNFVNLPAL
YNFVSSDAHNERFLFAGSLAKKEIQLPSLDRSQKKYRKAEWVEYIQGRSA
ILSRVTLETIINDLSYLSNFRSLNQDIMVAAAAMGYGIQAQNVTNFTKKL
RCKFLCCENDKKFIQNYDASEKCAKVLYRDYN
Run BLAST on NCBI

transcript from alignment at scaffold_89:150677..152088

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=transcript|length=1412bp|location=Sequence derived from alignment at scaffold_89:150677..152088 (Clytia hemisphaerica)
gtgtaaacaaagatggcggacgaAATAGCGACAAGTTTGAAACGATTATG GATTTTTAAGAAAAGacgaaattttataattttcttttgtattttctttt tcgGAGCCATTTTTATTGCACTTAATTTTTATCACTATAAGTTGATGTCT GAGTTTGGGTCGACCCTTGATTTCAATGGACATTTATATCAATATGACAA CAAAGGAAAAATAGAGCTCTCCTCGACATTCGATTTCACCTACAACTTAT TATCTTCCTTGAAAGTATCATTATTGACAAGTTTTAAAAAGAACACAAAA ATTATTGAAACACCGGTTACGCACTTGGTTCGGAAAAGCCAAGATACGGG AATGTTTTTACACAACGATAAAGGACAGCTTCTTTGTGGAACAACGACTC TGAAAGTGTTGATACTCGTTTTAAGCGAATACAAAGAACTCGCGTTACGT ATGGATATTCGGAAGACATGGGCGGATAAACACGCCCCAACTGCTAAATA TATCAGACAGAATAATCAATATAAAGAATTCAAGTGGCGCAAACTGTTCG TGATTAGTCGGGGTGGAGAAGAATGGGCGGGCGCCTCTTTCGTCGAAACT GAACTTAGAATGCAACCAGATATATTAGAAGTTGAAATCCAAGAACATCA CACAAAGAGGGCGTTGAAATTATATTCCGCCCTTCGATGGGTACTGAACA ATTGTAATTTCAAATACATCATGTACACAACTGCACACAATTTTGTCAAT CTTCCAGCTCTGTATAACTTTGTATCATCAGATGCTCACAATGAGAGATT TCTGTTTGCTGGTAGCTTGGCTAAGAAAGAAATCCAGCTTCCTAGTCTAG ATCGTTCACAGAAAAAATATAGGAAAGCAGAATGGGTTGAATATATTCAA GGACGTTCTGCCATATTGTCACGTGTCACCTTGGAAACCATAATAAATGA TTTATCTTATCTTAGCAATTTTCGATCACTTAATCAAGACATAATGGTAG CTGCAGCTGCAATGGGGTATGGAATACAAGCACAAAATGTAacaaatttt acgaaaaaaCTTCGCTGCAAATTTTTATGTtgtgaaaatgacaaaaagtt tATACAAAATTATGATGCTAGTGAAAAATGTGCTAAAGTATTGTACAGGG ATTATAACTAGGATACATGTATgtcttataagaacatccaaaaattttga agccttgggatgttctttaagcctaaaaatgttcttaacatgttcttatt ttcgccattatttgaataattttgcccattttcctatgaaattcagTGTT CTTGAGTTTgtaagtcttaaaatgttcttaacattttagccatcgaagcc ttatgttcttatatagtttgttcttatataaaaaacgtgtaggataaatt taaataaattaa

Coding sequence (CDS) from alignment at scaffold_89:150677..152088

>TCONS_00073280 ID=TCONS_00073280|Name=TCONS_00073280|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_89:150677..152088 (Clytia hemisphaerica)
atggcggacgaAATAGCGACAAGTTTGAAACGATTATGGATTTTTAAGAA
AAGacgaaattttataattttcttttgtattttctttttcgGAGCCATTT
TTATTGCACTTAATTTTTATCACTATAAGTTGATGTCTGAGTTTGGGTCG
ACCCTTGATTTCAATGGACATTTATATCAATATGACAACAAAGGAAAAAT
AGAGCTCTCCTCGACATTCGATTTCACCTACAACTTATTATCTTCCTTGA
AAGTATCATTATTGACAAGTTTTAAAAAGAACACAAAAATTATTGAAACA
CCGGTTACGCACTTGGTTCGGAAAAGCCAAGATACGGGAATGTTTTTACA
CAACGATAAAGGACAGCTTCTTTGTGGAACAACGACTCTGAAAGTGTTGA
TACTCGTTTTAAGCGAATACAAAGAACTCGCGTTACGTATGGATATTCGG
AAGACATGGGCGGATAAACACGCCCCAACTGCTAAATATATCAGACAGAA
TAATCAATATAAAGAATTCAAGTGGCGCAAACTGTTCGTGATTAGTCGGG
GTGGAGAAGAATGGGCGGGCGCCTCTTTCGTCGAAACTGAACTTAGAATG
CAACCAGATATATTAGAAGTTGAAATCCAAGAACATCACACAAAGAGGGC
GTTGAAATTATATTCCGCCCTTCGATGGGTACTGAACAATTGTAATTTCA
AATACATCATGTACACAACTGCACACAATTTTGTCAATCTTCCAGCTCTG
TATAACTTTGTATCATCAGATGCTCACAATGAGAGATTTCTGTTTGCTGG
TAGCTTGGCTAAGAAAGAAATCCAGCTTCCTAGTCTAGATCGTTCACAGA
AAAAATATAGGAAAGCAGAATGGGTTGAATATATTCAAGGACGTTCTGCC
ATATTGTCACGTGTCACCTTGGAAACCATAATAAATGATTTATCTTATCT
TAGCAATTTTCGATCACTTAATCAAGACATAATGGTAGCTGCAGCTGCAA
TGGGGTATGGAATACAAGCACAAAATGTAacaaattttacgaaaaaaCTT
CGCTGCAAATTTTTATGTtgtgaaaatgacaaaaagtttATACAAAATTA
TGATGCTAGTGAAAAATGTGCTAAAGTATTGTACAGGGATTATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045463XLOC_045463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073280-proteinTCONS_00073280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073280-exon-scaffold_89-1491911889:150677..152088TCONS_00073280-exon-scaffold_89-1491911889:150677..152088Clytia hemisphaericaexon
TCONS_00073280-exon-scaffold_89-1510915933:150677..152088TCONS_00073280-exon-scaffold_89-1510915933:150677..152088Clytia hemisphaericaexon
TCONS_00073280-exon-scaffold_89-1575043694:150677..152088TCONS_00073280-exon-scaffold_89-1575043694:150677..152088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:150677..152088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12637 0.154216 0.134283 0.250115 0.984541 0.53426 6.60586 7.1427 3.62022 4.15985 2.27185 4.90071 1.8523 2.3835 4.40325 3.9027 0.68644 0.817354 0.433731 0.168569 0.20962 0.0894988 0.369212 0.184492 0.158316 0.22607 0.452436 0.30831 0.296838 0.234161
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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