TCONS_00073275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073275
Unique NameTCONS_00073275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073275 ID=TCONS_00073275|Name=TCONS_00073275|organism=Clytia hemisphaerica|type=transcript|length=262bp
CTTAAGTTAGGACCTTTTTACTTTTGTGACTTAGATATTATTCAACTCAG
ACATATTATTTATTTCCTACATAATTATAGATTCACTCATATACTTAGGC
TTATTTTCTTTCATTGTCAAACTTTATACTTACGCTATTTTCGTTTTACA
TTATTTAGTTTGACGGTTTATTgtaccgtgaatagcacaggtcaaaattt
tatattgacgctgtgccgacgaatcgagattctgttcagcgcgcaatcaa
cgaagacaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_89:88688..88949

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073275 ID=TCONS_00073275|Name=TCONS_00073275|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at scaffold_89:88688..88949 (Clytia hemisphaerica)
cttttgtcttcgttgattgcgcgctgaacagaatctcgattcgtcggcac
agcgtcaatataaaattttgacctgtgctattcacggtacAATAAACCGT
CAAACTAAATAATGTAAAACGAAAATAGCGTAAGTATAAAGTTTGACAAT
GAAAGAAAATAAGCCTAAGTATATGAGTGAATCTATAATTATGTAGGAAA
TAAATAATATGTCTGAGTTGAATAATATCTAAGTCACAAAAGTAAAAAGG
TCCTAACTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045458XLOC_045458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073275-exon-scaffold_89-1491911889:88688..88949TCONS_00073275-exon-scaffold_89-1491911889:88688..88949Clytia hemisphaericaexon
TCONS_00073275-exon-scaffold_89-1510915933:88688..88949TCONS_00073275-exon-scaffold_89-1510915933:88688..88949Clytia hemisphaericaexon
TCONS_00073275-exon-scaffold_89-1575043694:88688..88949TCONS_00073275-exon-scaffold_89-1575043694:88688..88949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:88688..88949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.24233	0	0.705612	0.859015	0.678805	0	0	1.61033	0.664886	0	0.424231	4.23641	1.31987	58.9576	20.1845	0	2.45062	0	0.708571	1.23175	1.80242	1.46072	0.664002	0.683906	0	0.873438	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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