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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073265 ID=TCONS_00073265|Name=TCONS_00073265|organism=Clytia hemisphaerica|type=transcript|length=1304bp
AGAAGCTCATCAAAATCACATTAATAGAAGAATTCGTCGCGCTAAATAGA
AAATCGTTAAAAATTTTACTTCAATGACAAGACAGTGCTCGTAAACAGGG
TGAAACATGCTGATAGAAAGGGTACCGTATTTCAATCTCatcttcatttt
gattttattggaaatttatAGAACTGACACCAGAGCTTTTAGAAGTCGAT
TCCAATTAAGAGACAATGGTGTTGAAAAGAACTCTGTTGCATTGGAAACC
GATATGAATTTTACGCCGGGTAGATGCGTTCCAATTACGTTTAACCAAAC
GGTAACGAAACGTGGCTGTATTCCCGTTAAAATACAGAACAATTTATGTT
ATGGGACATGTGGCTCAATGTATATACCGTACGGGAATCCATTAAAAAAT
GATACTCGGAAAGAAACATTTTTCGATTGCAGACATTGTATACCAAGTAG
ATATCAATTGATCCGGCTACCTATGTATTGTCCGGGTAGGCGCCGAAAAC
ACCGGACAAAACGAGTTTTGCTTATTCATGATTGTAGTTGTAGTAGTAGA
ACTTGTTATTTGCATTCTTGGAACAAGCGATGAATGGCGGACAAAAAGGG
AAAGAGATTTCGAGATGTCAACATATCATTCAAAGAAATATCGCTATTTA
ACAGACTTTGAAACCGTGAAAATACGTCAATACTGCAACCGTTTCTTTCT
GATACACATATTTATCGCAGGAATGTTTTATCAGCTTCAAATTCGAATAT
TATTTGTGATGAAAGTTTAGAAGATCATCTCTAAGCTAACTACAGAAAAC
TATAAATGGGAAATCTTTTGACACCGATATCACCTTAACTATTGATAAAA
GTTCGACTGGTGATGGTAACCCTGGTCAATTTACATATACACATGTGTGA
TGTCTTTAATACAGACTGAATGAATGTTTTCAAGTGATATGGTAGACATA
CTGTATGTAGAACAAAGTGTTTCTTTAAGAATTAAGACGAAAAGAAGACT
TTTTAGCGTGCTAAACGACACTCGTCATTATAATACCAACGCAACAATAT
ACAGATTTTTGTCTGCGGAAAAACTTTGGAATATAAATTTGAGTCAACCT
AGACGAGTCAACTTATCAAGAGTAAGAATAAATCATGATGGGGTAGGCTT
TGCGCGATTATGAtactaatttcatttttttttatatattgcttttaaaa
ataatatcaaaatagCTGgctattttgtcaaattttatgttttgtaaaTA
TAAAGATTATCTTAATTATTTTCGTAAATTGAATAACGAACACCGAGAAC
AGCT Run BLAST on NCBI protein sequence of TCONS_00073265-protein >TCONS_00073265-protein ID=TCONS_00073265-protein|Name=TCONS_00073265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MLIERVPYFNLIFILILLEIYRTDTRAFRSRFQLRDNGVEKNSVALETDM
NFTPGRCVPITFNQTVTKRGCIPVKIQNNLCYGTCGSMYIPYGNPLKNDT
RKETFFDCRHCIPSRYQLIRLPMYCPGRRRKHRTKRVLLIHDCSCSSRTC
YLHSWNKR Run BLAST on NCBI transcript from alignment at scaffold_89:179095..180450- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073265 ID=TCONS_00073265|Name=TCONS_00073265|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at scaffold_89:179095..180450- (Clytia hemisphaerica)
AGAAGCTCATCAAAATCACATTAATAGAAGAATTCGTCGCGCTAAATAGA
AAATCGTTAAAAATTTTACTTCAATGACAAGACAGTGCTCGTAAACAGGG
TGAAACATGCNAAAATTTTACTTCAATGAAAAAAAAGTGCTGGTAAACAG
GGTGAAACATGCTGATAGAAAGGGTACCGTATTTCAATCTCATCTTCATT
TTGATTTTATTGGAAATTTATAGAACTGACACCAGAGCTTTTAGAAGTCG
ATTCCAATTAAGAGACAATGGTGTTGAAAAGAACTCTGTTGCATTGGAAA
CCGATATGAATTTTACGCCGGGTAGATGCGTTCCAATTACGTTTAACCAA
ACGGTAACGAAACGTGGCTGTATTCCCGTTAAAATACAGAACAATTTATG
TTATGGGACATGTGGCTCAATGTATATACCGTACGGGAATCCATTAAAAA
ATGATACTCGGAAAGAAACATTTTTCGATTGCAGACATTGTATACCAAGT
AGATATCAATTGATCCGGCTACCTATGTATTGTCCGGGTAGGCGCCGAAA
ACACCGGACAAAACGAGTTTTGCTTATTCATGATTGTAGTTGTAGTAGTA
GAACTTGTTATTTGCATTCTTGGAACAAGCGATGAATGGCGGACAAAAAG
GGAAAGAGATTTCGAGATGTCAACATATCATTCAAAGAAATATCGCTATT
TAACAGACTTTGAAACCGTGAAAATACGTCAATACTGCAACCGTTTCTTT
CTGATACACATATTTATCGCAGGAATGTTTTATCAGCTTCAAATTCGAAT
ATTATTTGTGATGAAAGTTTAGAAGATCATCTCTAAGCTAACTACAGAAA
ACTATAAATGGGAAATCTTTTGACACCGATATCACCTTAACTATTGATAA
AAGTTCGACTGGTGATGGTAACCCTGGTCAATTTACATATACACATGTGT
GATGTCTTTAATACAGACTGAATGAATGTTTTCAAGTGATATGGTAGACA
TACTGTATGTAGAACAAAGTGTTTCTTTAAGAATTAAGACGAAAAGAAGA
CTTTTTAGCGTGCTAAACGACACTCGTCATTATAATACCAACGCAACAAT
ATACAGATTTTTGTCTGCGGAAAAACTTTGGAATATAAATTTGAGTCAAC
CTAGACGAGTCAACTTATCAAGAGTAAGAATAAATCATGATGGGGTAGGC
TTTGCGCGATTATGATACTAATTTCATTTTTTTTTATATATTGCTTTTAA
AAATAATATCAAAATAGCTGGCTATTTTGTCAAATTTTATGTTTTGTAAA
TATAAAGATTATCTTAATTATTTTCGTAAATTGAATAACGAACACCGAGA
ACAGCT Coding sequence (CDS) from alignment at scaffold_89:179095..180450- >TCONS_00073265 ID=TCONS_00073265|Name=TCONS_00073265|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_89:179095..180450- (Clytia hemisphaerica)
ATGCTGATAGAAAGGGTACCGTATTTCAATCTCATCTTCATTTTGATTTT
ATTGGAAATTTATAGAACTGACACCAGAGCTTTTAGAAGTCGATTCCAAT
TAAGAGACAATGGTGTTGAAAAGAACTCTGTTGCATTGGAAACCGATATG
AATTTTACGCCGGGTAGATGCGTTCCAATTACGTTTAACCAAACGGTAAC
GAAACGTGGCTGTATTCCCGTTAAAATACAGAACAATTTATGTTATGGGA
CATGTGGCTCAATGTATATACCGTACGGGAATCCATTAAAAAATGATACT
CGGAAAGAAACATTTTTCGATTGCAGACATTGTATACCAAGTAGATATCA
ATTGATCCGGCTACCTATGTATTGTCCGGGTAGGCGCCGAAAACACCGGA
CAAAACGAGTTTTGCTTATTCATGATTGTAGTTGTAGTAGTAGAACTTGT
TATTTGCATTCTTGGAACAAGCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073265-exon-scaffold_89-1575043694:180345..180450 | TCONS_00073265-exon-scaffold_89-1575043694:180345..180450 | Clytia hemisphaerica | exon |
| TCONS_00073265-exon-scaffold_89-1575043694:179095..180292 | TCONS_00073265-exon-scaffold_89-1575043694:179095..180292 | Clytia hemisphaerica | exon |
| TCONS_00073265-exon-scaffold_89-1510915933:180345..180450 | TCONS_00073265-exon-scaffold_89-1510915933:180345..180450 | Clytia hemisphaerica | exon |
| TCONS_00073265-exon-scaffold_89-1510915933:179095..180292 | TCONS_00073265-exon-scaffold_89-1510915933:179095..180292 | Clytia hemisphaerica | exon |
| TCONS_00073265-exon-scaffold_89-1491911889:180345..180450 | TCONS_00073265-exon-scaffold_89-1491911889:180345..180450 | Clytia hemisphaerica | exon |
| TCONS_00073265-exon-scaffold_89-1491911889:179095..180292 | TCONS_00073265-exon-scaffold_89-1491911889:179095..180292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:179095..180450 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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