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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073261 ID=TCONS_00073261|Name=TCONS_00073261|organism=Clytia hemisphaerica|type=transcript|length=1312bp
ATGGCATGAAAGATCAACGGATCTTAAACCCAACATCAGCTTTCAAGTTT
GGTACCATCAATAATACAGTCCTATCTGACTACTTTAAGACAGCGCCATT
GGCAAGTGCTCTACGTATCCATCACTTTATGAAGCGTTATCACCAAAATG
ATTATAATGTTACATTACCACTCCTCGAAAGAAGCTATTTGCATGCTTTC
TTTGCAGAGCACGTTTTCGTGCTCCCGCACGTCAAGAAGTACGAATGCAA
ATTCAAGGCTCATAAAACACCAATCCCAGAGGCTAGTTATGGTGCTGTAG
TGGCTAAAGGATCACCTCTAAAAGGACTTGTTTCACAGGCTATTCTCAAA
CTTAACGATGCTAAAATTTTGGATGAGTTAAAGGAAAGATGGTTTACAAA
CGCATGTGAGAATACAGAATCGACGAATATAAACCCATTCAACTTAATAT
TCTTTTCATCACTTTTCATGGTTTTATTGTTTGCTGTTGTACTATCTTTC
ATCGTATTAGGAATNAAATACAGAATCGACAAACATAAACCCATTCAACT
TAATATTCTTTTCATCACTTTTTATGGTTTTATTGTTTGCTGTTGTACTA
TCTTTCATCGTATTAGGAATTGAAATTTACGGTCGCTGCATTTACGAGAA
ATCCTTTATTTACGAACAAGTCAGATTGATACGAGtgacaaaaaaacaaa
gtgTGGCTCGTAAAGAAGATGAATGGGATTATTTTGAAAGAGAAATTGTA
GAAAATGTTTTTACACACTGGAGAAATTTTGCTCAGAACAAAGGCTATGG
AAGCAGGCCTGCTTATGTTTGATTTGTCACGTGCATTCGTTATGGTTTCG
TATGTTTTTTTGGAAACGAAATTAAGTGATTTTATTGGCTAAAGATATTT
ATTCCAATGATTAACCAATAACATCCCATTCTCACAGTGGGACCCCCTAc
cactgaaaaaattggtcaaaatattgacccaagtggaaaattatattcca
attttgtccccactgaaaaaagCGGAATAAACAAGTCCTCAGTGCAAAAT
TATATGCTGTTCTTTGCCATCCCCATTGAATTGAAAACAACGTTATTCGA
GTTCCAGCCATTAAGAAcattggaatatcaatcccgCCGACTTTCAGTCC
GTTTTTTATCACCATACCCGCTGACAAAATCCTACCGGATCTAAGAGAAG
GGTCCAATAGTCCAATAGAATAGCTTTATTTCGTTTAACTATATATTATA
GAACCGTCGTAGCGTTTTTTTTGGTATAGTTTCGATTGGAAAGAATACTT
CTCAGAGTCGCG Run BLAST on NCBI transcript from alignment at scaffold_89:158105..166651- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073261 ID=TCONS_00073261|Name=TCONS_00073261|organism=Clytia hemisphaerica|type=transcript|length=8547bp|location=Sequence derived from alignment at scaffold_89:158105..166651- (Clytia hemisphaerica)
ATGGCATGAAAGATCAACGGGTAAGATTTATACTTTTGCTCTAAAGGCCG
GTCTCAACTTTCGCGCGACATGAGCGAAATTACGTTTTTGTAATGTCATT
GGTCGGTTGAAAAATGAAGCAATTCCATTGGTCGAAATTGACGTAACAAA
TGAAAAAAGTAAAACTTCCTTCAACTTTTTTTATTGATGCGAAACTTTTT
TATGACGTAATCTTTTCTTCAGGCAAAAAAAGGTTAAGAAAAAAACTGTC
ACCCATTTCGTGGGAAAGTGGAGACCGGCCTTGAGTAAAAAACTTTTAAG
GTGTTGATTTTTACTTTTACTCTTAATGACGAAATCAATGCTTTCCATTA
TGGGAAGGTAGAGAATACCTGGAACAAAAATCAGCTAGGTGCTTTGCTTA
GGGCTCTGGACATTTTTCGATTTTACACCAACTTTAAATGGCAACCTCTG
CATTTTAAAAAGATTAATGTATAACTTTTTTTATACGTTCTGTTAAACCT
ACCTTTTTAGAATTTAAAAATCGAAAAATTGAAATAAAAAAATGAAATAA
AGAAGAAAACGAAGAGTTTTTCGAAGAAGAGTGTTTCACCTTTCAAAGCC
CTAATCTCGGTAAAAACTAAACATTTTGGAATTTTTTTTGGTTCAGGTGA
TGTATCTATTTAGTATCTAAAAATGAAATTTCGGAAAATTTTTGTGGAAG
TATCTTCCCTTTAAAATCTCAAAAAACCTCATTTTTGGCAACTTTCTCCA
CAGCTATAACTTTGGATGTAGCCANAAAAAACCTCATTTTTGGCAATTTT
CTCCACTAAATTTCCATAAGAAAACAGCTATAACTTTGGATGTAGCCAAA
TAGAAAATTTTTCCGAAAAAATCATAATAAAGAAATTATTTGTCATTAAC
TTAATAAAATGATTTCCCCAAGGAGATTAGGCTTTTTTTGTGAAAAGTAT
ATGAATAGCGTGGTTTTGACGTTTTATCAAGGTCCATGTCACACTTTTTT
CTTAATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTT
TGTTCTTAAACATGTCAAAGAAGCGAAAACATAAGGTTTTATCTTCAAAT
TCTAAAATAGCGCACCGCGCTGAATCTAAAAATATATTGTGTTTTTGACA
TAATCATTACTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAACCTTT
GTGTTCATCTTTTTTGTACGTTAATTGCATCATTTGACAAAAGATGTATA
ACAACTTGCACCTATCTTTAATTGAGCCGCATTGAATTGTGGGATTGCAA
CTTGTACAAATTTCAAAGAAAGTGAAAAGTAATAATTATGACGTACGTGT
TGCGGAGCGCTATTGATTTTTCACAAAATTGGGTATGTCCAGAGCTCTTA
AGGGTGTGTGGCCTGAAGGGGAACGGTTTTTATTTTCTTGTTTTTAAGGC
CCATACTCTAAGGCCCGGGGGGGGGGGGACTAGGGCAAAATGGGTTACGG
GGGTGCTCCGCTGGTCAGGGTACCTTTTTAAACCTCCACGAGTCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCGCTGGTCAGGGTACCTTTTTTAACC
TCCGCGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGG
CCCTCGTAGGGTAACTATTTTTGGAAAATTTGGGAAAAAAGTAGAAAATT
TGATAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAA
TTTCGAGTCTCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCC
GTCGGTCGACAAGGGTAGTACCCCCCCGGGCCAATGCCGATAAAAATTCG
AAAGTTTTTTGTTGAAGACCCCTAAAGAAATTCTTTATACTTAAAAAAAA
AAGGTTTCTGAATATCTTTTTTCAAAGGTGAGATATTTATCTCCAAACTT
ACCACTCCATGCGCGACCTTTCGGCCTCTCACTTTAAAAAAAGTTCGATT
AAGTTCGATTTCAGTAATTGAACTTACTGTAATCGAATTTTGTATTTTGA
GAAGTTTGTGAGTATTTGACTAAAGTTCAACAACCGAACTTAGTCAAACA
TTAATCGGCCTACAAAATTTGATTCAGTTCGACAAAGTTCGATTAAAAAT
ACGGTGTTGGATTGGTTCGATTGATTATGTCTGGAAGAATAGATTGCTTG
AGGAATTTCAAAGATTGAGGTTTTTGGTTTGGTGGGAAAATGAAAAAAGG
TAATATGAATCATAATATAAAAGGTTCCAATTTTAGGTACCGACCGACCA
ACCTACCCATTTTTCAAATCTTCTCTAGGACATATGAACCAAACAATCAA
TTGGGCCTGGATGGCCCCTAGCTATCATCGATTATCGTTTTTAATTTATA
TTTAATAAATCGATTAATTATCGATTAGCTATCGATTTTAATCAATAATT
GATTTTATCGATTAGTAACGTCTGGATAACATAAATTGAGGCCAATATGT
GGGAGTAAGAAAAGGCCAATATATTTTTCTGATGTAGTGGCGTGGTGAAT
ATAATATATTTTCAAGCAAATTTTGTCTAGACAGACAATAAAAAATAATT
CATTGAAAACAATTTACCTGATATTTGATTATGCCGTCTTCTAAAGCCCA
ATGGGTGAATGCATGGCCAAGTGGATGTGGTAGAAGAAGAAAAATAATAA
ACAAAATTTGGCACCGATCAAAAANTTTTTGATTTTTTAAAGTATTTGCA
CGTTTTTTATTCAGTTCTTTCTATAGATTGTAAAATTTGCAAGATTTGCC
ATAGCCTAGCCCTACAGCAAAAGGTTTCAGTCCTAATGACTGCAGTTTTT
GAGAAATTCCATGTTTTTCATTGTTTGATCTGTCAAAGTTGAACTTGAGG
GAATCACCTTTTCAGTAATGACTCTAAAAAGACGATTGCNTTGCAAGATT
TGCCATAGCCTAGCCCTACGGCAAAAAGACTGACTGCAGTTTTTGAGAAA
TTCCATGTTTTTCATTGTTTGATCTGTCAAAGTTGAACTTGAGGGAATCA
CCTTTTCAGTAATGACTCTAAAAAGACGATTGCTTAAATGCCATGACAGA
AAATACAATGGAAAAGCTATTAAAATCGAATCCCTCATGAGCAAATGCCA
AATTACAAATGCCAGTTGGTCTAAACGCACCCACAGATTGGAAATTTCGA
AATAAGCTCATTAATATTGCCAATCCTCAAAGGATTGTCGGGGATTGTCA
TTTTCATTAATCTTTATATAAACGTTTCCATTGAACGACCAAAACTTATN
ACTATTAAAATCGAATCCCTCATGAGCAAATGCCAAATTACAAATGCCAG
TTGGTCTAAACGCACCCGGAAATTTCGAAATAAGGTCATTAATATTGCCA
ATCCTCAAAGGATAAAAAATCTTTATATAAACGTTTCCATTGAACGACCA
AAACTTATGAATTTGATTATCCTTCAACAATGCTTCACCGCGATCTGTAG
CTGCAAGTATGAAAAATCGGGGAAATTTCAATATACTTAGGCTTAAAAAA
CAACTTTTGGTTGTCAAAAGTCCACAAGAATTTGATAGAAAGTTGAAAAT
AACGTATAAAGCCCATTAAAAGAATTTGTTCTCAAATATTTGTTTTCACC
CTTCCAAACGAGAGAGCTTTCGTTTTCTCCAGATCCCTCAATCCCCTAAA
ATCCCCTCTCGGATCCCTCAAATCGGAATCCTTATAATTCCTATATTGTA
GTTGGTTTCTGTAAATAAAATTTTGGGCTAAACTAAACTCGACATCCTAT
ATGTAAAGAGAATACAACAAAAAGTTTTTATCGTGTATTAAAAATTTTAA
AGAAATCTTAAATATCTTGAACTTGTGAATCCGATACAGATCGCTGTGCT
TTTGATTTCCCCCATAGTAAACGATTNGTTCTGTAAATAAAATTTTGGGC
TAAACTAAACTCGACATCCTATATGTAAAGAGGATACAACAAAAAGTTTT
TATCGCGTATTAAAAATTTTAAAGAAATCTTAAATATCTTGAACTTGTGA
ATCCGATACAGATCGCTATGCTTTTGATTTCCCCCATAGTAAACGATTAT
AGTTACTCAAGTTGCTGTTTATGAAAATTTTGTCTGGTAAGATAGCTTTT
TCCTGTATTGCTGTTTTATGAAATTCTTTACTGGAGCGTAAAAGAGCTCC
ACAGATTTTTCGATTTTTAAAACGAACAATAGTTCTCCTTGGGAAGGGAT
GGTACTAGGTTGGATTGTTTATCAGTGGACTAGGTCAAATTGTNAATTCT
TTACTGGAGCGTAAAAGAGCTCCACAGATTTTTCGATTTTTAAAACGAAC
AATAGTTCTCCTTGGGAAGGGATGGTACTAGGTTGGATTGTTTATCAGTG
GACTAGGTCAAATTGTTTAACAGTGGACCGGACATGGATAGATTGGATTG
TTTATCAGTGGACTAGGNATAAACACTTTCGCTTCCTGAAAACCTAAAAA
CAAAAATCAAAACATCCCAAATGAGTGACCTGAGTGATTCTAGATTTTAG
TAGTGTTCTAGCTACTAATATCAGAAATCTCATCTGGCCACTCCACATGC
ATCCTTTAGGTAAAATCTCGTAGCAGACTCGAATAAGAGTACACCCCCTT
CTCACTGGGAACGCTTCTCACTAGGAAAATTGGTCAAAATGATCGTACCC
GTTGGAAAATTATACTTTTGTCCCCGCTGAAAATAATCAGATAAGCCAAT
CCTCAATGCAAATTATAATATCTTTTTTCCTTACTCACTGAATTTTCTAG
ACCGAAAACAATGGAATTAAAATCCCCAGTTATAAGTAAACATGGGAATA
TCAATTCCCATCGAGTTTAGGTCCGCTATTTTACCCCTACTGGCTGATAA
TATCCCACCGGGTCTGAGAGAAGGGGGTGTAAAAGTGACCCACTTCACTG
AAGTCGTTTGTGAAAAATGTTAAATACAGTTATATAGGTGATATACAGGG
TGTCCGGAAAAAAAGTATCGAGTTCGAACATGATTCTGAGTAGAAGGTTG
TTGCGTGTGTTTAAAAAAATGTAAGAAATTATATACCAACACAATAATTG
TTTTTACAACAGTCATTATGATTAAAAATAATTAACTTTCTTTACAATTT
TCAATAGCCCTTTTTACTATTCCCCTACCGCTGCCTAGTTTTACTTTTTT
ATTGTTCCATACATTCCATTTTTATTATTTTCATAGTTTTACATACGATT
CTTTACAAACATGTTTTAATTGTTGCGTTTTNGAGTAGAAGGTTGTTGCG
TTGTTTAAAAAAATGTAAGAAATTATATACCAACACAATAATTGTTTTTA
CAACAGTCATTATGATTAAAAATAATTAACTTTCTTTACAATTTTCATGT
AGTTAAAGTTATTGAGAATTGTTTTTTGTAAAAGTTATTCATAAAAGATG
TCTCATGACAATAAACATGACACAGAAAAACTTTGATAAACAATTTAGTG
AAACACACACGAAAACTTTCTTTCCATACACCATAGACTTTTTTTCGGGA
CACCCTGTACGATAATACAATAACTGTTATGTGATAATGTCCTTCAGCTT
TCCTTATTACCATACCAATACAGGGTGTCCCTAATTAAAGTATCGAGTTT
GAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAA
GAACGTTCTCCATCACACAGGTTTATTACAAAAGGTAGTTACAACGTATA
AATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTT
TGTGAACACACGCACATAAAACTTTATACTCATAGTTGTGTTTCGACTCG
ATACTTTAATTAGGGACACCCTGTATTACCAATAATCTAAGTAAAGCATC
TTTGTAATTCGCAGAAAATTAGCAAGACTCAGCAACTTTGGTTTTCATAA
AATTGGGGAAGCCGAAAACGACCAAACCAACAATTTAAGAAAATGAGGAT
GAAATCTTGGGGGTACTGTGAGGGACGAATCTAGCATGGGACAATCAAAA
GCACATCATTGTCTCAACCACCCGAAAACAGAGTAAAACACCCCATTTTC
CTTCTTGTTTCCAGATCTTAAACCCAACATCAGCTTTCAAGTTTGGTNAC
TGTGAGGGACGAATTTAGCATGGGACAATCAAAAGCACATCATTGTCTCA
ACCACCCGAAAACAGAGTAAAACACCCCATTTTCCTTCTTGTTTCCAGAT
CTTAAACCCAACATCAGCTTTCAAGTTTGGTACCATCAATAATACAGTCC
TATCTGACTACTTTAAGACAGCGCCATTGGCAAGTGCTCTACGTATCCAT
CACTTTATGAAGCGTTATCACCAAAATGATTATAATGTTACATTACCACT
CCTCGAAAGAAGGTAAGCCTTAGACTACACGCATCCGCTCTGATATGTTA
TGATATAGGGGCTACGCAACATGTATGAAATTCACGTCCAACAGTTTCCC
TTGTCTTTCTGTTTCAAAAACTTAATTAATAGTAAGTTGTATTTGAGAGA
TTTTTGAACTTCATTAAATTTAAGTTATAAATTTGAATGACTAAAGGCTG
ATGCAATCATTGGATTTCAATTCCTTTTTATGAAAGTTGAAACAGGTTAC
CCCAATTTGGGTAACCCTCGGACGGGACCTTTACACAATTAGCATACCCA
ATATCAATACATATCACAGGGGATACGTGCAGCCTAGTTAATATTTGGCT
TTATAGAATTGACCACTATTCAATATTTTATCCACTCTGTTTACAATTAG
AATTGAGCTCATTCAATATTCACCCAAATCAGGATGAACAAGATCAAAGC
AGTTCAACGAGGGCAGATTTTCATACTTTCATACGGAGCCACTACCTTTA
GAAATTATGATTATGCGTGCCCGAGTTGAGTAATCAGAATCTACTGAAAA
ATTTGATTAGTAGATTTAGGCTAAGAGTGATTGACTTTCATTGCCTAAAA
TTGAAAGCTCCGTTTTATGAATCCTGTATGAACTTTAGAATTTTTTTGCC
GATAGTAACTACACCCCCTTCTCACAGACCGACTTATCCTCCAATTTTGT
CCCCATTGAAAAAAATCAAATAAACCAATCCTCACTGCAAAATATTACGC
TACTTTCCCCATCCCCACAGACTTTTCAGACAACAAAAGAATTGAAATCC
CCAGCCATAAAAAATATGGGAATATCAATCCCCATCGAGTTTCAGTACAT
TAATTTCATCCCCACTGGCTGAAAAAATCATACTGGGTCTGAGAAGGGGG
TATATAACTACAGCCTTACAAGCCTTACAAGATATCACCCATTTTTCTCT
ATTTCTCTTCTTTTTCCAGCTATTTGCATGCTTTCTTTGCAGAGCACGTT
TTCGTGCTCCCGCACGTCAAGAAGTACGAATGCAAATTCAAGGCTCATAA
AACACCAATCCCAGAGGCTAGTTATGGTGCTGTAGTGGCTAAAGGATCAC
CTCTAAAAGGACTTGTTTCACAGGCTATTCTCAAACTTAACGATGCTAAA
ATTTTGGATGAGTTAAAGGAAAGATGGTTTACAAACGCATGTGAGAATAC
AGAATCGACGAATATAAACCCATTCAACTTAATATTCTTTTCATCACTTT
TCATGGTTTTATTGTTTGCTGTTGTACTATCTTTCATCGTATTAGGAATN
AAATACAGAATCGACAAACATAAACCCATTCAACTTAATATTCTTTTCAT
CACTTTTTATGGTTTTATTGTTTGCTGTTGTACTATCTTTCATCGTATTA
GGAATTGAAATTTACGGTCGCTGCATTTACGAGAAATCCTTTATTTACGA
ACAAGTCAGATTGATACGAGTGACAAAAAAACAAAGTGTGGCTCGTAAAG
AAGATGAATGGGATTATTTTGAAAGAGAAATTGTAGAAAATGTTTTTACA
CACTGGAGAAATTTTGCTCAGAACAAAGGCTATGGAAGCAGGCCTGCTTA
TGTTTGATTTGTCACGTGCATTCGTTATGGTTTCGTATGTTTTTTTGGAA
ACGAAATTAAGTGATTTTATTGGCTAAAGATATTTATTCCAATGATTAAC
CAATAACATCCCATTCTCACAGTGGGACCCCCTACCACTGAAAAAATTGG
TCAAAATATTGACCCAAGTGGAAAATTATATTCCAATTTTGTCCCCACTG
AAAAAAGCGGAATAAACAAGTCCTCAGTGCAAAATTATATGCTGTTCTTT
GCCATCCCCATTGAATTGAAAACAACGTTATTCGAGTTCCAGCCATTAAG
AACATTGGAATATCAATCCCGCCGACTTTCAGTCCGTTTTTTATCACCAT
ACCCGCTGACAAAATCCTACCGGATCTAAGAGAAGGGTCCAATAGTCCAA
TAGAATAGCTTTATTTCGTTTAACTATATATTATAGAACCGTCGTAGCGT
TTTTTTTGGTATAGTTTCGATTGGAAAGAATACTTCTCAGAGTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073261-exon-scaffold_89-1575043694:166632..166651 | TCONS_00073261-exon-scaffold_89-1575043694:166632..166651 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1575043694:160190..160353 | TCONS_00073261-exon-scaffold_89-1575043694:160190..160353 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1575043694:158105..159232 | TCONS_00073261-exon-scaffold_89-1575043694:158105..159232 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1510915933:166632..166651 | TCONS_00073261-exon-scaffold_89-1510915933:166632..166651 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1510915933:160190..160353 | TCONS_00073261-exon-scaffold_89-1510915933:160190..160353 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1510915933:158105..159232 | TCONS_00073261-exon-scaffold_89-1510915933:158105..159232 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1491911889:166632..166651 | TCONS_00073261-exon-scaffold_89-1491911889:166632..166651 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1491911889:160190..160353 | TCONS_00073261-exon-scaffold_89-1491911889:160190..160353 | Clytia hemisphaerica | exon |
| TCONS_00073261-exon-scaffold_89-1491911889:158105..159232 | TCONS_00073261-exon-scaffold_89-1491911889:158105..159232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:158105..166651 - |
Blast
The following BLAST results are available for this feature:
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