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TCONS_00073261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073261
Unique NameTCONS_00073261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073261 ID=TCONS_00073261|Name=TCONS_00073261|organism=Clytia hemisphaerica|type=transcript|length=1312bp
ATGGCATGAAAGATCAACGGATCTTAAACCCAACATCAGCTTTCAAGTTT
GGTACCATCAATAATACAGTCCTATCTGACTACTTTAAGACAGCGCCATT
GGCAAGTGCTCTACGTATCCATCACTTTATGAAGCGTTATCACCAAAATG
ATTATAATGTTACATTACCACTCCTCGAAAGAAGCTATTTGCATGCTTTC
TTTGCAGAGCACGTTTTCGTGCTCCCGCACGTCAAGAAGTACGAATGCAA
ATTCAAGGCTCATAAAACACCAATCCCAGAGGCTAGTTATGGTGCTGTAG
TGGCTAAAGGATCACCTCTAAAAGGACTTGTTTCACAGGCTATTCTCAAA
CTTAACGATGCTAAAATTTTGGATGAGTTAAAGGAAAGATGGTTTACAAA
CGCATGTGAGAATACAGAATCGACGAATATAAACCCATTCAACTTAATAT
TCTTTTCATCACTTTTCATGGTTTTATTGTTTGCTGTTGTACTATCTTTC
ATCGTATTAGGAATNAAATACAGAATCGACAAACATAAACCCATTCAACT
TAATATTCTTTTCATCACTTTTTATGGTTTTATTGTTTGCTGTTGTACTA
TCTTTCATCGTATTAGGAATTGAAATTTACGGTCGCTGCATTTACGAGAA
ATCCTTTATTTACGAACAAGTCAGATTGATACGAGtgacaaaaaaacaaa
gtgTGGCTCGTAAAGAAGATGAATGGGATTATTTTGAAAGAGAAATTGTA
GAAAATGTTTTTACACACTGGAGAAATTTTGCTCAGAACAAAGGCTATGG
AAGCAGGCCTGCTTATGTTTGATTTGTCACGTGCATTCGTTATGGTTTCG
TATGTTTTTTTGGAAACGAAATTAAGTGATTTTATTGGCTAAAGATATTT
ATTCCAATGATTAACCAATAACATCCCATTCTCACAGTGGGACCCCCTAc
cactgaaaaaattggtcaaaatattgacccaagtggaaaattatattcca
attttgtccccactgaaaaaagCGGAATAAACAAGTCCTCAGTGCAAAAT
TATATGCTGTTCTTTGCCATCCCCATTGAATTGAAAACAACGTTATTCGA
GTTCCAGCCATTAAGAAcattggaatatcaatcccgCCGACTTTCAGTCC
GTTTTTTATCACCATACCCGCTGACAAAATCCTACCGGATCTAAGAGAAG
GGTCCAATAGTCCAATAGAATAGCTTTATTTCGTTTAACTATATATTATA
GAACCGTCGTAGCGTTTTTTTTGGTATAGTTTCGATTGGAAAGAATACTT
CTCAGAGTCGCG
Run BLAST on NCBI

transcript from alignment at scaffold_89:158105..166651-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073261 ID=TCONS_00073261|Name=TCONS_00073261|organism=Clytia hemisphaerica|type=transcript|length=8547bp|location=Sequence derived from alignment at scaffold_89:158105..166651- (Clytia hemisphaerica)
ATGGCATGAAAGATCAACGGGTAAGATTTATACTTTTGCTCTAAAGGCCG GTCTCAACTTTCGCGCGACATGAGCGAAATTACGTTTTTGTAATGTCATT GGTCGGTTGAAAAATGAAGCAATTCCATTGGTCGAAATTGACGTAACAAA TGAAAAAAGTAAAACTTCCTTCAACTTTTTTTATTGATGCGAAACTTTTT TATGACGTAATCTTTTCTTCAGGCAAAAAAAGGTTAAGAAAAAAACTGTC ACCCATTTCGTGGGAAAGTGGAGACCGGCCTTGAGTAAAAAACTTTTAAG GTGTTGATTTTTACTTTTACTCTTAATGACGAAATCAATGCTTTCCATTA TGGGAAGGTAGAGAATACCTGGAACAAAAATCAGCTAGGTGCTTTGCTTA GGGCTCTGGACATTTTTCGATTTTACACCAACTTTAAATGGCAACCTCTG CATTTTAAAAAGATTAATGTATAACTTTTTTTATACGTTCTGTTAAACCT ACCTTTTTAGAATTTAAAAATCGAAAAATTGAAATAAAAAAATGAAATAA AGAAGAAAACGAAGAGTTTTTCGAAGAAGAGTGTTTCACCTTTCAAAGCC CTAATCTCGGTAAAAACTAAACATTTTGGAATTTTTTTTGGTTCAGGTGA TGTATCTATTTAGTATCTAAAAATGAAATTTCGGAAAATTTTTGTGGAAG TATCTTCCCTTTAAAATCTCAAAAAACCTCATTTTTGGCAACTTTCTCCA CAGCTATAACTTTGGATGTAGCCANAAAAAACCTCATTTTTGGCAATTTT CTCCACTAAATTTCCATAAGAAAACAGCTATAACTTTGGATGTAGCCAAA TAGAAAATTTTTCCGAAAAAATCATAATAAAGAAATTATTTGTCATTAAC TTAATAAAATGATTTCCCCAAGGAGATTAGGCTTTTTTTGTGAAAAGTAT ATGAATAGCGTGGTTTTGACGTTTTATCAAGGTCCATGTCACACTTTTTT CTTAATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTT TGTTCTTAAACATGTCAAAGAAGCGAAAACATAAGGTTTTATCTTCAAAT TCTAAAATAGCGCACCGCGCTGAATCTAAAAATATATTGTGTTTTTGACA TAATCATTACTCTCGATGTGTTTGTACGAGTTCCAATCCCATCAACCTTT GTGTTCATCTTTTTTGTACGTTAATTGCATCATTTGACAAAAGATGTATA ACAACTTGCACCTATCTTTAATTGAGCCGCATTGAATTGTGGGATTGCAA CTTGTACAAATTTCAAAGAAAGTGAAAAGTAATAATTATGACGTACGTGT TGCGGAGCGCTATTGATTTTTCACAAAATTGGGTATGTCCAGAGCTCTTA AGGGTGTGTGGCCTGAAGGGGAACGGTTTTTATTTTCTTGTTTTTAAGGC CCATACTCTAAGGCCCGGGGGGGGGGGGACTAGGGCAAAATGGGTTACGG GGGTGCTCCGCTGGTCAGGGTACCTTTTTAAACCTCCACGAGTCCNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNCCGCTGGTCAGGGTACCTTTTTTAACC TCCGCGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGG CCCTCGTAGGGTAACTATTTTTGGAAAATTTGGGAAAAAAGTAGAAAATT TGATAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAA TTTCGAGTCTCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCC GTCGGTCGACAAGGGTAGTACCCCCCCGGGCCAATGCCGATAAAAATTCG AAAGTTTTTTGTTGAAGACCCCTAAAGAAATTCTTTATACTTAAAAAAAA AAGGTTTCTGAATATCTTTTTTCAAAGGTGAGATATTTATCTCCAAACTT ACCACTCCATGCGCGACCTTTCGGCCTCTCACTTTAAAAAAAGTTCGATT AAGTTCGATTTCAGTAATTGAACTTACTGTAATCGAATTTTGTATTTTGA GAAGTTTGTGAGTATTTGACTAAAGTTCAACAACCGAACTTAGTCAAACA TTAATCGGCCTACAAAATTTGATTCAGTTCGACAAAGTTCGATTAAAAAT ACGGTGTTGGATTGGTTCGATTGATTATGTCTGGAAGAATAGATTGCTTG AGGAATTTCAAAGATTGAGGTTTTTGGTTTGGTGGGAAAATGAAAAAAGG TAATATGAATCATAATATAAAAGGTTCCAATTTTAGGTACCGACCGACCA ACCTACCCATTTTTCAAATCTTCTCTAGGACATATGAACCAAACAATCAA TTGGGCCTGGATGGCCCCTAGCTATCATCGATTATCGTTTTTAATTTATA TTTAATAAATCGATTAATTATCGATTAGCTATCGATTTTAATCAATAATT GATTTTATCGATTAGTAACGTCTGGATAACATAAATTGAGGCCAATATGT GGGAGTAAGAAAAGGCCAATATATTTTTCTGATGTAGTGGCGTGGTGAAT ATAATATATTTTCAAGCAAATTTTGTCTAGACAGACAATAAAAAATAATT CATTGAAAACAATTTACCTGATATTTGATTATGCCGTCTTCTAAAGCCCA ATGGGTGAATGCATGGCCAAGTGGATGTGGTAGAAGAAGAAAAATAATAA ACAAAATTTGGCACCGATCAAAAANTTTTTGATTTTTTAAAGTATTTGCA CGTTTTTTATTCAGTTCTTTCTATAGATTGTAAAATTTGCAAGATTTGCC ATAGCCTAGCCCTACAGCAAAAGGTTTCAGTCCTAATGACTGCAGTTTTT GAGAAATTCCATGTTTTTCATTGTTTGATCTGTCAAAGTTGAACTTGAGG GAATCACCTTTTCAGTAATGACTCTAAAAAGACGATTGCNTTGCAAGATT TGCCATAGCCTAGCCCTACGGCAAAAAGACTGACTGCAGTTTTTGAGAAA TTCCATGTTTTTCATTGTTTGATCTGTCAAAGTTGAACTTGAGGGAATCA CCTTTTCAGTAATGACTCTAAAAAGACGATTGCTTAAATGCCATGACAGA AAATACAATGGAAAAGCTATTAAAATCGAATCCCTCATGAGCAAATGCCA AATTACAAATGCCAGTTGGTCTAAACGCACCCACAGATTGGAAATTTCGA AATAAGCTCATTAATATTGCCAATCCTCAAAGGATTGTCGGGGATTGTCA TTTTCATTAATCTTTATATAAACGTTTCCATTGAACGACCAAAACTTATN ACTATTAAAATCGAATCCCTCATGAGCAAATGCCAAATTACAAATGCCAG TTGGTCTAAACGCACCCGGAAATTTCGAAATAAGGTCATTAATATTGCCA ATCCTCAAAGGATAAAAAATCTTTATATAAACGTTTCCATTGAACGACCA AAACTTATGAATTTGATTATCCTTCAACAATGCTTCACCGCGATCTGTAG CTGCAAGTATGAAAAATCGGGGAAATTTCAATATACTTAGGCTTAAAAAA CAACTTTTGGTTGTCAAAAGTCCACAAGAATTTGATAGAAAGTTGAAAAT AACGTATAAAGCCCATTAAAAGAATTTGTTCTCAAATATTTGTTTTCACC CTTCCAAACGAGAGAGCTTTCGTTTTCTCCAGATCCCTCAATCCCCTAAA ATCCCCTCTCGGATCCCTCAAATCGGAATCCTTATAATTCCTATATTGTA GTTGGTTTCTGTAAATAAAATTTTGGGCTAAACTAAACTCGACATCCTAT ATGTAAAGAGAATACAACAAAAAGTTTTTATCGTGTATTAAAAATTTTAA AGAAATCTTAAATATCTTGAACTTGTGAATCCGATACAGATCGCTGTGCT TTTGATTTCCCCCATAGTAAACGATTNGTTCTGTAAATAAAATTTTGGGC TAAACTAAACTCGACATCCTATATGTAAAGAGGATACAACAAAAAGTTTT TATCGCGTATTAAAAATTTTAAAGAAATCTTAAATATCTTGAACTTGTGA ATCCGATACAGATCGCTATGCTTTTGATTTCCCCCATAGTAAACGATTAT AGTTACTCAAGTTGCTGTTTATGAAAATTTTGTCTGGTAAGATAGCTTTT TCCTGTATTGCTGTTTTATGAAATTCTTTACTGGAGCGTAAAAGAGCTCC ACAGATTTTTCGATTTTTAAAACGAACAATAGTTCTCCTTGGGAAGGGAT GGTACTAGGTTGGATTGTTTATCAGTGGACTAGGTCAAATTGTNAATTCT TTACTGGAGCGTAAAAGAGCTCCACAGATTTTTCGATTTTTAAAACGAAC AATAGTTCTCCTTGGGAAGGGATGGTACTAGGTTGGATTGTTTATCAGTG GACTAGGTCAAATTGTTTAACAGTGGACCGGACATGGATAGATTGGATTG TTTATCAGTGGACTAGGNATAAACACTTTCGCTTCCTGAAAACCTAAAAA CAAAAATCAAAACATCCCAAATGAGTGACCTGAGTGATTCTAGATTTTAG TAGTGTTCTAGCTACTAATATCAGAAATCTCATCTGGCCACTCCACATGC ATCCTTTAGGTAAAATCTCGTAGCAGACTCGAATAAGAGTACACCCCCTT CTCACTGGGAACGCTTCTCACTAGGAAAATTGGTCAAAATGATCGTACCC GTTGGAAAATTATACTTTTGTCCCCGCTGAAAATAATCAGATAAGCCAAT CCTCAATGCAAATTATAATATCTTTTTTCCTTACTCACTGAATTTTCTAG ACCGAAAACAATGGAATTAAAATCCCCAGTTATAAGTAAACATGGGAATA TCAATTCCCATCGAGTTTAGGTCCGCTATTTTACCCCTACTGGCTGATAA TATCCCACCGGGTCTGAGAGAAGGGGGTGTAAAAGTGACCCACTTCACTG AAGTCGTTTGTGAAAAATGTTAAATACAGTTATATAGGTGATATACAGGG TGTCCGGAAAAAAAGTATCGAGTTCGAACATGATTCTGAGTAGAAGGTTG TTGCGTGTGTTTAAAAAAATGTAAGAAATTATATACCAACACAATAATTG TTTTTACAACAGTCATTATGATTAAAAATAATTAACTTTCTTTACAATTT TCAATAGCCCTTTTTACTATTCCCCTACCGCTGCCTAGTTTTACTTTTTT ATTGTTCCATACATTCCATTTTTATTATTTTCATAGTTTTACATACGATT CTTTACAAACATGTTTTAATTGTTGCGTTTTNGAGTAGAAGGTTGTTGCG TTGTTTAAAAAAATGTAAGAAATTATATACCAACACAATAATTGTTTTTA CAACAGTCATTATGATTAAAAATAATTAACTTTCTTTACAATTTTCATGT AGTTAAAGTTATTGAGAATTGTTTTTTGTAAAAGTTATTCATAAAAGATG TCTCATGACAATAAACATGACACAGAAAAACTTTGATAAACAATTTAGTG AAACACACACGAAAACTTTCTTTCCATACACCATAGACTTTTTTTCGGGA CACCCTGTACGATAATACAATAACTGTTATGTGATAATGTCCTTCAGCTT TCCTTATTACCATACCAATACAGGGTGTCCCTAATTAAAGTATCGAGTTT GAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAA GAACGTTCTCCATCACACAGGTTTATTACAAAAGGTAGTTACAACGTATA AATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTT TGTGAACACACGCACATAAAACTTTATACTCATAGTTGTGTTTCGACTCG ATACTTTAATTAGGGACACCCTGTATTACCAATAATCTAAGTAAAGCATC TTTGTAATTCGCAGAAAATTAGCAAGACTCAGCAACTTTGGTTTTCATAA AATTGGGGAAGCCGAAAACGACCAAACCAACAATTTAAGAAAATGAGGAT GAAATCTTGGGGGTACTGTGAGGGACGAATCTAGCATGGGACAATCAAAA GCACATCATTGTCTCAACCACCCGAAAACAGAGTAAAACACCCCATTTTC CTTCTTGTTTCCAGATCTTAAACCCAACATCAGCTTTCAAGTTTGGTNAC TGTGAGGGACGAATTTAGCATGGGACAATCAAAAGCACATCATTGTCTCA ACCACCCGAAAACAGAGTAAAACACCCCATTTTCCTTCTTGTTTCCAGAT CTTAAACCCAACATCAGCTTTCAAGTTTGGTACCATCAATAATACAGTCC TATCTGACTACTTTAAGACAGCGCCATTGGCAAGTGCTCTACGTATCCAT CACTTTATGAAGCGTTATCACCAAAATGATTATAATGTTACATTACCACT CCTCGAAAGAAGGTAAGCCTTAGACTACACGCATCCGCTCTGATATGTTA TGATATAGGGGCTACGCAACATGTATGAAATTCACGTCCAACAGTTTCCC TTGTCTTTCTGTTTCAAAAACTTAATTAATAGTAAGTTGTATTTGAGAGA TTTTTGAACTTCATTAAATTTAAGTTATAAATTTGAATGACTAAAGGCTG ATGCAATCATTGGATTTCAATTCCTTTTTATGAAAGTTGAAACAGGTTAC CCCAATTTGGGTAACCCTCGGACGGGACCTTTACACAATTAGCATACCCA ATATCAATACATATCACAGGGGATACGTGCAGCCTAGTTAATATTTGGCT TTATAGAATTGACCACTATTCAATATTTTATCCACTCTGTTTACAATTAG AATTGAGCTCATTCAATATTCACCCAAATCAGGATGAACAAGATCAAAGC AGTTCAACGAGGGCAGATTTTCATACTTTCATACGGAGCCACTACCTTTA GAAATTATGATTATGCGTGCCCGAGTTGAGTAATCAGAATCTACTGAAAA ATTTGATTAGTAGATTTAGGCTAAGAGTGATTGACTTTCATTGCCTAAAA TTGAAAGCTCCGTTTTATGAATCCTGTATGAACTTTAGAATTTTTTTGCC GATAGTAACTACACCCCCTTCTCACAGACCGACTTATCCTCCAATTTTGT CCCCATTGAAAAAAATCAAATAAACCAATCCTCACTGCAAAATATTACGC TACTTTCCCCATCCCCACAGACTTTTCAGACAACAAAAGAATTGAAATCC CCAGCCATAAAAAATATGGGAATATCAATCCCCATCGAGTTTCAGTACAT TAATTTCATCCCCACTGGCTGAAAAAATCATACTGGGTCTGAGAAGGGGG TATATAACTACAGCCTTACAAGCCTTACAAGATATCACCCATTTTTCTCT ATTTCTCTTCTTTTTCCAGCTATTTGCATGCTTTCTTTGCAGAGCACGTT TTCGTGCTCCCGCACGTCAAGAAGTACGAATGCAAATTCAAGGCTCATAA AACACCAATCCCAGAGGCTAGTTATGGTGCTGTAGTGGCTAAAGGATCAC CTCTAAAAGGACTTGTTTCACAGGCTATTCTCAAACTTAACGATGCTAAA ATTTTGGATGAGTTAAAGGAAAGATGGTTTACAAACGCATGTGAGAATAC AGAATCGACGAATATAAACCCATTCAACTTAATATTCTTTTCATCACTTT TCATGGTTTTATTGTTTGCTGTTGTACTATCTTTCATCGTATTAGGAATN AAATACAGAATCGACAAACATAAACCCATTCAACTTAATATTCTTTTCAT CACTTTTTATGGTTTTATTGTTTGCTGTTGTACTATCTTTCATCGTATTA GGAATTGAAATTTACGGTCGCTGCATTTACGAGAAATCCTTTATTTACGA ACAAGTCAGATTGATACGAGTGACAAAAAAACAAAGTGTGGCTCGTAAAG AAGATGAATGGGATTATTTTGAAAGAGAAATTGTAGAAAATGTTTTTACA CACTGGAGAAATTTTGCTCAGAACAAAGGCTATGGAAGCAGGCCTGCTTA TGTTTGATTTGTCACGTGCATTCGTTATGGTTTCGTATGTTTTTTTGGAA ACGAAATTAAGTGATTTTATTGGCTAAAGATATTTATTCCAATGATTAAC CAATAACATCCCATTCTCACAGTGGGACCCCCTACCACTGAAAAAATTGG TCAAAATATTGACCCAAGTGGAAAATTATATTCCAATTTTGTCCCCACTG AAAAAAGCGGAATAAACAAGTCCTCAGTGCAAAATTATATGCTGTTCTTT GCCATCCCCATTGAATTGAAAACAACGTTATTCGAGTTCCAGCCATTAAG AACATTGGAATATCAATCCCGCCGACTTTCAGTCCGTTTTTTATCACCAT ACCCGCTGACAAAATCCTACCGGATCTAAGAGAAGGGTCCAATAGTCCAA TAGAATAGCTTTATTTCGTTTAACTATATATTATAGAACCGTCGTAGCGT TTTTTTTGGTATAGTTTCGATTGGAAAGAATACTTCTCAGAGTCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045451XLOC_045451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073261-exon-scaffold_89-1575043694:166632..166651TCONS_00073261-exon-scaffold_89-1575043694:166632..166651Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1575043694:160190..160353TCONS_00073261-exon-scaffold_89-1575043694:160190..160353Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1575043694:158105..159232TCONS_00073261-exon-scaffold_89-1575043694:158105..159232Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1510915933:166632..166651TCONS_00073261-exon-scaffold_89-1510915933:166632..166651Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1510915933:160190..160353TCONS_00073261-exon-scaffold_89-1510915933:160190..160353Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1510915933:158105..159232TCONS_00073261-exon-scaffold_89-1510915933:158105..159232Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1491911889:166632..166651TCONS_00073261-exon-scaffold_89-1491911889:166632..166651Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1491911889:160190..160353TCONS_00073261-exon-scaffold_89-1491911889:160190..160353Clytia hemisphaericaexon
TCONS_00073261-exon-scaffold_89-1491911889:158105..159232TCONS_00073261-exon-scaffold_89-1491911889:158105..159232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:158105..166651 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.0405349 0.518628 0 7.60384e-06 0.433877 0.0166995 0 0.146453 0.0787068 0.207752 0.760031 0.571716 0.704723 0.396517 0 0.0105688 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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