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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073260 ID=TCONS_00073260|Name=TCONS_00073260|organism=Clytia hemisphaerica|type=transcript|length=1807bp
CACGAAACCTTCAATCTAATCGAATTTTCTACATAATAAATTTCGATGTT
ATGTCATTTCATATCAATGaaaaaattgtagaaaaaatACAGAAATAATT
ATTTAGCCGCTGGTGTCACGCACAATGTCAGAAACAACTAACAATAATAC
AAGGTTAGTTTTTAACGTGGGCGGCCAACGCCACGAGGCATTTTTATCAA
CACTAAAAGCTATACCTGGAACTCGTTTATCATggattgctgaaaatttc
atgcTATTGAAACATTCGCCTGCATATGACCCTAtcaaagaagaattttt
ttttgatcgTAGCCCGACGGCATTTGTTCAGATCCTAAACTATTTTCGAA
CCGGCGAATTGCATTATCCTACCAACGTCTGTGGACCCTCATTTGCGACG
GAGCTCCGGTTCTGGGGCCTTGATGAAGAGCAAATGCAAAGCTGTTGCTG
GGAAGGTTTCACTGCAAATAGAGATAAAGACGCAAAGCTGAAAGGTTTTA
AAGGGCCACATTTCGAAATGGATTCATTAGCAGCCGACGAAGACAATTTC
GAAGCACTAGGAAAGCGTTACGAGATTCGCTATAAACTGTGGAAGTTCTT
TGACGATGCATATTCTTCTAAAGCAGCTAAGatttattcTTCAATCCATC
ACGTATTGTTGCTGATTTACATCATACTCCCCATCATAAACTCCATGTCT
TTCATCAAAGACCCTCCAAACGAAAAAGCAAGAAACGCTGGTCTATTCAT
TAATTACAGTGAAATCGTTTTAAACATCTTCTTTACAATGGAGCTTGTCA
TACGATTCATGATATTcccaaacaaaaagaaattcatCCGATCACGATTA
AACATTGCTGATTTCATGTCTATCATTCCGATTTATATTGATATATTATT
TTGCCAATACCCATCGTATAAAAGCTATAAAAACTATATCAATATTCTCG
TCGTGTTCCGCATCTTGAAGATTTTCCGCTCGTTTCGTTACAATTACACA
TTACAAGTACTTTTTAACACACTGAAGTCATCGTTACCTGAACTTCTTCT
GCTGGTTTTCTTGATGATTTTGTTAGCAACCGTTTTTGCGTTCGGTTGTT
ATTTTACCGAACAGGAAGATCCGAATACTGAGTTCCATTCTGTTCTGCAT
AGTCTATGGTGGGCTTTCATTACTATGACAAcgGTTGGATATGGCGACAT
GTATCCAAACAGTTGGTTCGGACGAGTTATCGGTATTATGGCTGCTATAT
GTGGTTTACTCATGGTGGCTCTACCAGTATCAGTTGTCGCTACAAATTTC
TCAATCTATTACAGCTATGCTAAAGCTAGAATATCACTACCTCCAAAAAA
GGAAGTCCGATATGCAAAAGACGCTAACAATTTCTTAGGACAACCTACGA
GTAATGACGAGAAAGAAAGACTTAAACGGAATAAAATTCAACCGGGTACA
CCCTGTGTTACACCAATTAAATTGAGTCCGGTGACTAACAGAAAACCCCG
GTCACAGACATTACCACCAATGAATGATGAACGCTTTTCAAAAATTCACC
GGGCCGTTCAAAAGATGAGACAAGACGGTTTGTTAAGtagtaaaagaaag
aaaatggatTTACCAACTCTTGTTATGGTGCTGTCCAGTAAAGGAGATTG
GACCCAACCAAAgtagtgaagaaaaaaaacagaaaagtgtGGAAAAATCC
ACAGccctatacaccttttcgaccgtagtcgcacgggcatttttttgtcc
actttatcccactaaaaccgtcccaatccttttttgacgcatttttctat
tgtctat Run BLAST on NCBI protein sequence of TCONS_00073260-protein >TCONS_00073260-protein ID=TCONS_00073260-protein|Name=TCONS_00073260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MSETTNNNTRLVFNVGGQRHEAFLSTLKAIPGTRLSWIAENFMLLKHSPA
YDPIKEEFFFDRSPTAFVQILNYFRTGELHYPTNVCGPSFATELRFWGLD
EEQMQSCCWEGFTANRDKDAKLKGFKGPHFEMDSLAADEDNFEALGKRYE
IRYKLWKFFDDAYSSKAAKIYSSIHHVLLLIYIILPIINSMSFIKDPPNE
KARNAGLFINYSEIVLNIFFTMELVIRFMIFPNKKKFIRSRLNIADFMSI
IPIYIDILFCQYPSYKSYKNYINILVVFRILKIFRSFRYNYTLQVLFNTL
KSSLPELLLLVFLMILLATVFAFGCYFTEQEDPNTEFHSVLHSLWWAFIT
MTTVGYGDMYPNSWFGRVIGIMAAICGLLMVALPVSVVATNFSIYYSYAK
ARISLPPKKEVRYAKDANNFLGQPTSNDEKERLKRNKIQPGTPCVTPIKL
SPVTNRKPRSQTLPPMNDERFSKIHRAVQKMRQDGLLSSKRKKMDLPTLV
MVLSSKGDWTQPK Run BLAST on NCBI transcript from alignment at scaffold_89:120537..123740- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073260 ID=TCONS_00073260|Name=TCONS_00073260|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at scaffold_89:120537..123740- (Clytia hemisphaerica)
CACGAAACCTTCAATCTAATCGAATTTTCTACATAATAAATTTCGATGTT
ATGTCATTTCATATCAATGAAAAAATTGTAGAAAAAATACAGAAATAATT
ATTTAGCCGCTGGTGTCACGCACAATGTCAGAAACAACTAACAATAATAC
AAGGTTAGTTTTTAACGTGGGCGGCCAACGCCACGAGGCATTTTTATCAA
CACTAAAAGCTATACCTGGAACTCGTTTATCATGGATTGCTGAAAATTTC
ATGCTATTGAAACATTCGCCTGCATATGACCCTATCAAAGAAGAATTTTT
TTTTGATCGTAGCCCGACGGCATTTGTTCAGATCCTAAACTATTTTCGAA
CCGGCGAATTGCATTATCCTACCAACGTCTGTGGACCCTCATTTGCGACG
GAGCTCCGGTTCTGGGGCCTTGATGAAGAGCAAATGCAAAGCTGTTGCTG
GGAAGGTTTCACTGCAAATAGAGATAAAGACGCAAAGCTGAAAGGTTTTA
AAGGGCCACATTTCGAAATGGATTCATTAGCAGCCGACGAAGACAATTTC
GAAGCACTAGGAAAGCGTTACGAGATTCGCTATAAACTGTGGAAGTTCTT
TGACGATGCATATTCTTCTAAAGCAGCTAAGGTAAATATATTATAACGGG
TTTATGTTTGATACCAAGCATTTTGAGTTGCAGGGTTTCAAATCCTTAGA
TTTTGTTCCACGAATGAAAAATGTCTTGCGACGGAGCCCCCCCCCACACT
ATTCACTTTGAAAATTGTCTTAAAATCCATTCCTATTTTAATGGGTTAAA
AGTAACGTAAAACTACGACATATCGGGAAAATAGGTCGAACTCTCAAACA
ATTCAACTTTTTACTATATTACTTGTCACTGACACATGAGATTTAATCAT
TGAAAACTTTGAAACCATAAGTGGCTAAAGAAAAGTTCAAGGAGAAAATT
GATATTGTTGAGTAAACAGCAATGGTATTTATAAGTGGTACCTCCCAAGT
GGTACCTCTCATCAAGTAATAGCTCCAACTTATTTTGCTTTCTTCACGAC
CATGAAATTTGCCACAAACTTATTCTACGAGCAAAAAAAGCTCGAACTAG
CCCACATGCAAACTACTGAGTCGACCTCATTTCCACAACATAACTATAAA
TAACTGGAATGGCTACTCTAAGGTCCCAAATGATAAGGAGGGTTCCGAAT
AATTGTACCTCCATAAAACCTTTTTTATTCATATACTAAAACCAGACTAT
TTAGAGCAATTCAGCTTGTGATAGTTGAAAATATGACATTAAAGAATACT
AACATATAATACTAAAGCGACCGTAGTGCAGTGATAGAGCATCCGGAAAC
GGCTTGCAAGCTTGCAAGATTCCCAAAATGGTACTTGATGCCTCTCTGCT
TGATGCTCAACAATTAAGAGGGGCCCTAAGAGCAGGATCAAGGGTAAGTG
GAGCAATCCAGGGAGAAAGAGTGGCACCCTCCCCTACCTGCGTATATAGC
TATCGAAAGAGGAGCCTTCGGGTTGCCTCCGACAACTTACTTACTTAACA
TACAATATACTTTAAATTTTTAGATTTATTCTTCAATCCATCACGTATTG
TTGCTGATTTACATCATACTCCCCATCATAAACTCCATGTCTTTCATCAA
AGACCCTCCAAACGAAAAAGCAAGAAACGCTGGTCTATTCATTAATTACA
GTGAAATCGTTTTAAACATCTTCTTTACAATGGAGCTTGTCATACGATTC
ATGATATTCCCAAACAAAAAGAAATTCATCCGATCACGATTAAACATTGC
TGATTTCATGTCTATCATTCCGATTTATATTGATATATTATTTTGCCAAT
ACCCATCGTATAAAAGCTATAAAAACTATATCAATATTCTCGTCGTGTTC
CGCATCTTGAAGATTTTCCGCTCGTTTCGTTACAATTACACATTACAAGT
ACTTTTTAACACACTGAAGTCATCGTTACCTGAACTTCTTCTGCTGGTTT
TCTTGATGATTTTGTTAGCAACCGTTTTTGCGTTCGGTTGTTATTTTACC
GAACAGGAAGATCCGAATACTGAGTTCCATTCTGTTCTGCATAGTCTATG
GTGGGCTTTCATTACTATGACAACGGTAAAAAAAATTACTTTTTCAAACT
TTAACTGGGGAATATAGGCAATATACTTATTGGGGGGCACTTAGGCAAAA
TCGGGTAAGGGAACGTGCCACTCGCCAGGGTCCCCTTTTTAGGGGATATC
AGATATCTGACATGGTCTAAAATTTACTAATTTTCAAGATGTGTTCTGAC
AGGATCGACTTTTGGTAATTTTGGACCATTCTCAGGGTGGAAATTAGAAA
AAAGTTCAATTTTTCGTCTACTTTTATTCATTTCGGCCACCTGAAAATAG
GAAAACTTTTCGATTTTTCTTTCTGACAGGGTCCAACTCCAGCGGCACGT
CCCCATCAGCCGCCAAGCCCCCCCCGGTGTATATTCCCTATATAATTTTC
TGGAATCTAAGACCAAGATTTTTCTTTATTTACGTTCTCAACGTTTACGT
CAGCCTCATGATCATCTTTTCTACCGCTAGGTTGGATATGGCGACATGTA
TCCAAACAGTTGGTTCGGACGAGTTATCGGTATTATGGCTGCTATATGTG
GTTTACTCATGGTGGCTCTACCAGTATCAGTTGTCGCTACAAATTTCTCA
ATCTATTACAGCTATGCTAAAGCTAGAATATCACTACCTCCAAAAAAGGA
AGTCCGATATGCAAAAGACGCTAACAATTTCTTAGGACAACCTACGAGTA
ATGACGAGAAAGAAAGACTTAAACGGAATAAAATTCAACCGGGTACACCC
TGTGTTACACCAATTAAATTGAGTCCGGTGACTAACAGAAAACCCCGGTC
ACAGACATTACCACCAATGAATGATGAACGCTTTTCAAAAATTCACCGGG
CCGTTCAAAAGATGAGACAAGACGGTTTGTTAAGTAGTAAAAGAAAGAAA
ATGGATTTACCAACTCTTGTTATGGTGCTGTCCAGTAAAGGAGATTGGAC
CCAACCAAAGTAGTGAAGAAAAAAAACAGAAAAGTGTGGAAAAATCCACA
GCCCTATACACCTTTTCGACCGTAGTCGCACGGGCATTTTTTTGTCCACT
TTATCCCACTAAAACCGTCCCAATCCTTTTTTGACGCATTTTTCTATTGT
CTAT Coding sequence (CDS) from alignment at scaffold_89:120537..123740- >TCONS_00073260 ID=TCONS_00073260|Name=TCONS_00073260|organism=Clytia hemisphaerica|type=CDS|length=4626bp|location=Sequence derived from alignment at scaffold_89:120537..123740- (Clytia hemisphaerica)
GTTGGATATGGCGACATGTATCCAAACAGTTGGTTCGGACGAGTTATCGG
TATTATGGCTGCTATATGTGGTTTACTCATGGTGGCTCTACCAGTATCAG
TTGTCGCTACAAATTTCTCAATCTATTACAGCTATGCTAAAGCTAGAATA
TCACTACCTCCAAAAAAGGAAGTCCGATATGCAAAAGACGCTAACAATTT
CTTAGGACAACCTACGAGTAATGACGAGAAAGAAAGACTTAAACGGAATA
AAATTCAACCGGGTACACCCTGTGTTACACCAATTAAATTGAGTCCGGTG
ACTAACAGAAAACCCCGGTCACAGACATTACCACCAATGAATGATGAACG
CTTTTCAAAAATTCACCGGGCCGTTCAAAAGATGAGACAAGACGGTTTGT
TAAGTAGTAAAAGAAAGAAAATGGATTTACCAACTCTTGTTATGGTGCTG
TCCAGTAAAGGAGATTGGACCCAACCAAAGTAGATTTATTCTTCAATCCA
TCACGTATTGTTGCTGATTTACATCATACTCCCCATCATAAACTCCATGT
CTTTCATCAAAGACCCTCCAAACGAAAAAGCAAGAAACGCTGGTCTATTC
ATTAATTACAGTGAAATCGTTTTAAACATCTTCTTTACAATGGAGCTTGT
CATACGATTCATGATATTCCCAAACAAAAAGAAATTCATCCGATCACGAT
TAAACATTGCTGATTTCATGTCTATCATTCCGATTTATATTGATATATTA
TTTTGCCAATACCCATCGTATAAAAGCTATAAAAACTATATCAATATTCT
CGTCGTGTTCCGCATCTTGAAGATTTTCCGCTCGTTTCGTTACAATTACA
CATTACAAGTACTTTTTAACACACTGAAGTCATCGTTACCTGAACTTCTT
CTGCTGGTTTTCTTGATGATTTTGTTAGCAACCGTTTTTGCGTTCGGTTG
TTATTTTACCGAACAGGAAGATCCGAATACTGAGTTCCATTCTGTTCTGC
ATAGTCTATGGTGGGCTTTCATTACTATGACAACGATGTCAGAAACAACT
AACAATAATACAAGGTTAGTTTTTAACGTGGGCGGCCAACGCCACGAGGC
ATTTTTATCAACACTAAAAGCTATACCTGGAACTCGTTTATCATGGATTG
CTGAAAATTTCATGCTATTGAAACATTCGCCTGCATATGACCCTATCAAA
GAAGAATTTTTTTTTGATCGTAGCCCGACGGCATTTGTTCAGATCCTAAA
CTATTTTCGAACCGGCGAATTGCATTATCCTACCAACGTCTGTGGACCCT
CATTTGCGACGGAGCTCCGGTTCTGGGGCCTTGATGAAGAGCAAATGCAA
AGCTGTTGCTGGGAAGGTTTCACTGCAAATAGAGATAAAGACGCAAAGCT
GAAAGGTTTTAAAGGGCCACATTTCGAAATGGATTCATTAGCAGCCGACG
AAGACAATTTCGAAGCACTAGGAAAGCGTTACGAGATTCGCTATAAACTG
TGGAAGTTCTTTGACGATGCATATTCTTCTAAAGCAGCTAAGGTTGGATA
TGGCGACATGTATCCAAACAGTTGGTTCGGACGAGTTATCGGTATTATGG
CTGCTATATGTGGTTTACTCATGGTGGCTCTACCAGTATCAGTTGTCGCT
ACAAATTTCTCAATCTATTACAGCTATGCTAAAGCTAGAATATCACTACC
TCCAAAAAAGGAAGTCCGATATGCAAAAGACGCTAACAATTTCTTAGGAC
AACCTACGAGTAATGACGAGAAAGAAAGACTTAAACGGAATAAAATTCAA
CCGGGTACACCCTGTGTTACACCAATTAAATTGAGTCCGGTGACTAACAG
AAAACCCCGGTCACAGACATTACCACCAATGAATGATGAACGCTTTTCAA
AAATTCACCGGGCCGTTCAAAAGATGAGACAAGACGGTTTGTTAAGTAGT
AAAAGAAAGAAAATGGATTTACCAACTCTTGTTATGGTGCTGTCCAGTAA
AGGAGATTGGACCCAACCAAAGTAGATTTATTCTTCAATCCATCACGTAT
TGTTGCTGATTTACATCATACTCCCCATCATAAACTCCATGTCTTTCATC
AAAGACCCTCCAAACGAAAAAGCAAGAAACGCTGGTCTATTCATTAATTA
CAGTGAAATCGTTTTAAACATCTTCTTTACAATGGAGCTTGTCATACGAT
TCATGATATTCCCAAACAAAAAGAAATTCATCCGATCACGATTAAACATT
GCTGATTTCATGTCTATCATTCCGATTTATATTGATATATTATTTTGCCA
ATACCCATCGTATAAAAGCTATAAAAACTATATCAATATTCTCGTCGTGT
TCCGCATCTTGAAGATTTTCCGCTCGTTTCGTTACAATTACACATTACAA
GTACTTTTTAACACACTGAAGTCATCGTTACCTGAACTTCTTCTGCTGGT
TTTCTTGATGATTTTGTTAGCAACCGTTTTTGCGTTCGGTTGTTATTTTA
CCGAACAGGAAGATCCGAATACTGAGTTCCATTCTGTTCTGCATAGTCTA
TGGTGGGCTTTCATTACTATGACAACGATGTCAGAAACAACTAACAATAA
TACAAGGTTAGTTTTTAACGTGGGCGGCCAACGCCACGAGGCATTTTTAT
CAACACTAAAAGCTATACCTGGAACTCGTTTATCATGGATTGCTGAAAAT
TTCATGCTATTGAAACATTCGCCTGCATATGACCCTATCAAAGAAGAATT
TTTTTTTGATCGTAGCCCGACGGCATTTGTTCAGATCCTAAACTATTTTC
GAACCGGCGAATTGCATTATCCTACCAACGTCTGTGGACCCTCATTTGCG
ACGGAGCTCCGGTTCTGGGGCCTTGATGAAGAGCAAATGCAAAGCTGTTG
CTGGGAAGGTTTCACTGCAAATAGAGATAAAGACGCAAAGCTGAAAGGTT
TTAAAGGGCCACATTTCGAAATGGATTCATTAGCAGCCGACGAAGACAAT
TTCGAAGCACTAGGAAAGCGTTACGAGATTCGCTATAAACTGTGGAAGTT
CTTTGACGATGCATATTCTTCTAAAGCAGCTAAGGTTGGATATGGCGACA
TGTATCCAAACAGTTGGTTCGGACGAGTTATCGGTATTATGGCTGCTATA
TGTGGTTTACTCATGGTGGCTCTACCAGTATCAGTTGTCGCTACAAATTT
CTCAATCTATTACAGCTATGCTAAAGCTAGAATATCACTACCTCCAAAAA
AGGAAGTCCGATATGCAAAAGACGCTAACAATTTCTTAGGACAACCTACG
AGTAATGACGAGAAAGAAAGACTTAAACGGAATAAAATTCAACCGGGTAC
ACCCTGTGTTACACCAATTAAATTGAGTCCGGTGACTAACAGAAAACCCC
GGTCACAGACATTACCACCAATGAATGATGAACGCTTTTCAAAAATTCAC
CGGGCCGTTCAAAAGATGAGACAAGACGGTTTGTTAAGTAGTAAAAGAAA
GAAAATGGATTTACCAACTCTTGTTATGGTGCTGTCCAGTAAAGGAGATT
GGACCCAACCAAAGTAGATTTATTCTTCAATCCATCACGTATTGTTGCTG
ATTTACATCATACTCCCCATCATAAACTCCATGTCTTTCATCAAAGACCC
TCCAAACGAAAAAGCAAGAAACGCTGGTCTATTCATTAATTACAGTGAAA
TCGTTTTAAACATCTTCTTTACAATGGAGCTTGTCATACGATTCATGATA
TTCCCAAACAAAAAGAAATTCATCCGATCACGATTAAACATTGCTGATTT
CATGTCTATCATTCCGATTTATATTGATATATTATTTTGCCAATACCCAT
CGTATAAAAGCTATAAAAACTATATCAATATTCTCGTCGTGTTCCGCATC
TTGAAGATTTTCCGCTCGTTTCGTTACAATTACACATTACAAGTACTTTT
TAACACACTGAAGTCATCGTTACCTGAACTTCTTCTGCTGGTTTTCTTGA
TGATTTTGTTAGCAACCGTTTTTGCGTTCGGTTGTTATTTTACCGAACAG
GAAGATCCGAATACTGAGTTCCATTCTGTTCTGCATAGTCTATGGTGGGC
TTTCATTACTATGACAACGATGTCAGAAACAACTAACAATAATACAAGGT
TAGTTTTTAACGTGGGCGGCCAACGCCACGAGGCATTTTTATCAACACTA
AAAGCTATACCTGGAACTCGTTTATCATGGATTGCTGAAAATTTCATGCT
ATTGAAACATTCGCCTGCATATGACCCTATCAAAGAAGAATTTTTTTTTG
ATCGTAGCCCGACGGCATTTGTTCAGATCCTAAACTATTTTCGAACCGGC
GAATTGCATTATCCTACCAACGTCTGTGGACCCTCATTTGCGACGGAGCT
CCGGTTCTGGGGCCTTGATGAAGAGCAAATGCAAAGCTGTTGCTGGGAAG
GTTTCACTGCAAATAGAGATAAAGACGCAAAGCTGAAAGGTTTTAAAGGG
CCACATTTCGAAATGGATTCATTAGCAGCCGACGAAGACAATTTCGAAGC
ACTAGGAAAGCGTTACGAGATTCGCTATAAACTGTGGAAGTTCTTTGACG
ATGCATATTCTTCTAAAGCAGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073260-exon-scaffold_89-1575043694:123110..123740 | TCONS_00073260-exon-scaffold_89-1575043694:123110..123740 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1575043694:121616..122167 | TCONS_00073260-exon-scaffold_89-1575043694:121616..122167 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1575043694:120537..121160 | TCONS_00073260-exon-scaffold_89-1575043694:120537..121160 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1510915933:123110..123740 | TCONS_00073260-exon-scaffold_89-1510915933:123110..123740 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1510915933:121616..122167 | TCONS_00073260-exon-scaffold_89-1510915933:121616..122167 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1510915933:120537..121160 | TCONS_00073260-exon-scaffold_89-1510915933:120537..121160 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1491911889:123110..123740 | TCONS_00073260-exon-scaffold_89-1491911889:123110..123740 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1491911889:121616..122167 | TCONS_00073260-exon-scaffold_89-1491911889:121616..122167 | Clytia hemisphaerica | exon |
| TCONS_00073260-exon-scaffold_89-1491911889:120537..121160 | TCONS_00073260-exon-scaffold_89-1491911889:120537..121160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_89 | supercontig | scaffold_89:120537..123740 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00073260 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.782e-71 Identity = 161/448 (35.94%), Postives = 241/448 (53.79%), Query Frame = 2
Query: 140 NNNTRLVFNVGGQRHEAFLSTLKAIPGTRLSWIAENFMLLKHSP-AYDPIKEEFFFDRSPTAFVQILNYFRTGELHYPTNVCGPSFATELRFWGLDEEQMQSCCWEGFTANRDKDAKLKGFK--------------GP--------HFEMDSLAADEDNFEALGKRYEIRY--KLWKFFDDXXXXXXXXXXXXXHHVXXXXXXXXXXXNSMS----FIKDPPNEKARNAG-----------LFINYSEIVLNIFFTMELVIRFMIFPNKKKFIRSRLNIADFMSIIPIYIDILFCQYPSYKSYKNYINILVVFR---ILKIFRSFRYNYTLQVLFNTXXXXXXXXXXXXXXXXXXATVFAFGCYFTEQ-----EDP----NTEFHSVLHSLWWAFITMTTVGYGDMYPNSWFGRVIGIMAAICGLLMVALPVSVVATNFSIYYSYAKA 1327
+ + R+V NVGG RH+ + STL+ +PGTRL+W+AE HS YDP +EFFFDR P F ILNY+RTG+LH P +VCGP + EL FWG+DE ++ CCW + +RD + L F GP EM A D+ + + R+ ++W F+D YSS+ A+ + +L+ I + + + E RN F+ Y E V ++FT E ++R + PNK +FI++ LNI DF++I+P Y+++ S K+ K+ + L V R IL+IF+ R+ L+VL +TL++S E LLL+ + L +FA Y+ E+ DP +T F ++ WWA +TMTT+GYGDMYP +W G ++G + A+ G+L +A+PV V+ NF +YYS A A
Sbjct: 5 DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEP---DAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSS-KAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
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