TCONS_00073260-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073260-protein
Unique NameTCONS_00073260-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073260-protein ID=TCONS_00073260-protein|Name=TCONS_00073260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MSETTNNNTRLVFNVGGQRHEAFLSTLKAIPGTRLSWIAENFMLLKHSPA
YDPIKEEFFFDRSPTAFVQILNYFRTGELHYPTNVCGPSFATELRFWGLD
EEQMQSCCWEGFTANRDKDAKLKGFKGPHFEMDSLAADEDNFEALGKRYE
IRYKLWKFFDDAYSSKAAKIYSSIHHVLLLIYIILPIINSMSFIKDPPNE
KARNAGLFINYSEIVLNIFFTMELVIRFMIFPNKKKFIRSRLNIADFMSI
IPIYIDILFCQYPSYKSYKNYINILVVFRILKIFRSFRYNYTLQVLFNTL
KSSLPELLLLVFLMILLATVFAFGCYFTEQEDPNTEFHSVLHSLWWAFIT
MTTVGYGDMYPNSWFGRVIGIMAAICGLLMVALPVSVVATNFSIYYSYAK
ARISLPPKKEVRYAKDANNFLGQPTSNDEKERLKRNKIQPGTPCVTPIKL
SPVTNRKPRSQTLPPMNDERFSKIHRAVQKMRQDGLLSSKRKKMDLPTLV
MVLSSKGDWTQPK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045450XLOC_045450Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073260TCONS_00073260Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 91..112
score: 45.96
coord: 73..88
score: 73.26
coord: 159..171
score: 52.99
coord: 58..71
score: 59.92
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 211..234
score: 35.52
coord: 277..303
score: 38.64
coord: 162..190
score: 21.58
coord: 366..392
score: 42.57
coord: 237..257
score: 39.22
coord: 306..329
score: 33.76
coord: 57..76
score: 52.47
coord: 337..359
score: 61.45
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 57..67
score: 63.03
coord: 377..388
score: 53.47
coord: 306..320
score: 30.06
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 9..114
e-value: 5.4E-8
score: 42.6
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 178..397
e-value: 2.1E-35
score: 122.0
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 12..107
e-value: 1.0E-23
score: 83.4
NoneNo IPR availableGENE3D1.20.120.350coord: 167..305
e-value: 1.1E-22
score: 79.7
NoneNo IPR availableGENE3D3.30.710.10coord: 5..124
e-value: 2.5E-25
score: 88.3
NoneNo IPR availableGENE3D1.10.287.70coord: 306..356
e-value: 6.1E-17
score: 61.0
NoneNo IPR availableGENE3D1.20.5.110coord: 358..393
e-value: 4.9E-11
score: 41.6
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 171..393
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 9..112

Blast
[Close]
BLAST of TCONS_00073260-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.468e-84
Identity = 162/448 (36.16%), Postives = 243/448 (54.24%), Query Frame = 0 
Query:    6 NNNTRLVFNVGGQRHEAFLSTLKAIPGTRLSWIAENFMLLKHSP-AYDPIKEEFFFDRSPTAFVQILNYFRTGELHYPTNVCGPSFATELRFWGLDEEQMQSCCWEGFTANRDKDAKLKGFKGP----------------------HFEMDSLAADEDNFEALGKRYEIRY--KLWKFFDDAYSSKAAK--IYSSIHHVLLLIYIIL--------PIINSMSFIKDPPNEKAR-----NAGLFINYSEIVLNIFFTMELVIRFMIFPNKKKFIRSRLNIADFMSIIPIYIDILFCQYPSYKSYKNYINILVV---FRILKIFRSFRYNYTLQVLFNTLKSSLPELLLLVFLMILLATVFAFGCYFTEQ-----EDP----NTEFHSVLHSLWWAFITMTTVGYGDMYPNSWFGRVIGIMAAICGLLMVALPVSVVATNFSIYYSYAKA 401
            + + R+V NVGG RH+ + STL+ +PGTRL+W+AE      HS   YDP  +EFFFDR P  F  ILNY+RTG+LH P +VCGP +  EL FWG+DE  ++ CCW  +  +RD +  L  F G                         EM    A  D+ +     +  R+  ++W  F+D YSS+ A+   ++S+  +L+ I            PI+N           + R         F+ Y E V  ++FT E ++R +  PNK +FI++ LNI DF++I+P Y+++      S K+ K+ +  L V    RIL+IF+  R+   L+VL +TL++S  E LLL+  + L   +FA   Y+ E+      DP    +T F ++    WWA +TMTT+GYGDMYP +W G ++G + A+ G+L +A+PV V+  NF +YYS A A
Sbjct:    5 DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEP---DAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSS-KAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00073260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC11.468e-8436.16Potassium voltage-gated channel subfamily C member... [more]
back to top