TCONS_00073258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073258
Unique NameTCONS_00073258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073258 ID=TCONS_00073258|Name=TCONS_00073258|organism=Clytia hemisphaerica|type=transcript|length=1295bp
ctcagtTTCTTTATTTGGAGAAGAACTATTTGGATGGATTGAGTGAAGAT
TTCTTCCCTGCTCTACCATTGTTGAAATGGCTTGATGTCCGCCACAATCA
TCTCCGAAGTCTGCCAAACAACATCCACATTGCAAAGAACTTGAGAAACC
TGCTGTTGGAAGGGAACCAGTTATCTCATCTTCCATTTGAATTAGGTTTG
TTGACATCGCTATCCGGTTTGAATTTGATCGGTAATCCATTGGTTGTTCC
GCCCCAAGAAGTGGTCGCTTGTGGTGCAAAGGTAATTTTGAAGTATTTAA
GAGAGCAGCTGGCGATTGAacaaaagtttggaaaaatgGATCTTGGAGAT
GTTGTTGGAGACAGCAGGCATCGTCACAAAACTTCTGAAGATTTCTCTGA
CGAAGAAAGCACTATTCCTTTTGAAGCAGgaGCAGGGTACTCGGCTAACA
CTTTCGCTACTAACGACACAACCCATTTCTCGACTAATAACATTGATCTT
GAAACAAAAACTAATACTGATACGCTTTTGACACAAAAGTTAGAGGTTTC
ACTAACACCTAATGATTCAGAACAAACCTCTTCACTTGATCATGTAGGGA
AGTCTGACCAAGTTCTACCTACTCAGAAGTCAATGTCTAAAAAGTTGTCA
AAGAGTAATCAAAAATGCGACAACATTAGAGCACATGTAGTCAAAACGAG
ATCTGATATTAAACAGAAATCGAAATCTGACTCCAAACTTGAAACTAAAG
AGAACGCTCATCAACGAAGAGTTGCCGataagaaaaagattttgactGAG
AATTTGGCTAACAGACCACAAACCAGTCCAAGTGAATTGAATCTAATACG
CAGGAAAAGTAGACAGCGTAAAAGAGAGGTTAAAAAAGAAGATAATAAAA
GTCGAATCGTTAATTTGACTGCACCAACATCAACCAAGGATATTGGCGAA
TCTACAAATGCCAAGAAGAGAGTTAATCCTTTGGTAACACAAATGCCAAG
GTTCAAAGATCTGAAAATGGACAGTATGGTTGCATTGCGATTGTCTGACC
ATCACTTCATCATCCCTGGTCAACCATCCCTAGGGAAAATTATACTCATC
TCTGACAGTCATGTTACAGTGCACATGTTCACTGGTTCTTTTGGTGGCGC
CTGGTGGCCGATGATGAGTCGCCAGAGCCCTTACACCCGAGAAGTTTCTT
TAGATAACGTAGTTCATCAGTTTGAACTGGACCAACAGAATATGTTATTT
GCTAAAGATGTAGATCTTTTAAAAGCCCTTTGTAAAAGATAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_89:336858..342013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073258 ID=TCONS_00073258|Name=TCONS_00073258|organism=Clytia hemisphaerica|type=transcript|length=5156bp|location=Sequence derived from alignment at scaffold_89:336858..342013+ (Clytia hemisphaerica)
ctcagtTTCTTTATTTGGAGAAGAACTATTTGGATGGATTGAGTGAAGAT
TTCTTCCCTGCTCTACCATTGTTGAAATGGCTTGATGTCCGCCACAATCA
TCTCCGAAGTCTGCCAAACAACATCCACATTGCAAAGTAAATATATGACT
TTTGTTTTGTCCTGACTATCTAAGGTTAAAGTAATTAGAACTGACTGGGA
GAGGCTTAAAAGTTTTGATATAGATTgaattatatttatattttatccTC
CTGAGTCGTTTGTGTATAAGTACTAAGCACCACCAGAGAGCACGAGTTGG
GTAGAGGCAAGTGCAGTGATTTTCATATCTAAGATATTGAATGCTGTCGA
CTGGATTGGGTTTGTTCCGTTTTTTGGAAGGATTATCTTTCTCGTAGGCT
TCTGCTcctcctctagcgaaaaaagtttctatataggaagtatatctcaG
TGCCGCAGGAAGCATTTTGATATGACACCGTGAGGGCCAACCACCGCACG
GTTTGGGCcgtgggggggggggaattttgaaatctacagctctaaattgg
ctaaaaccaaaataattcgaataacaactaaaataattcgaataaaaact
aaaataattcgaataaaaactaaaataattcgaataaaaactaaaataat
tcgaataaaaactaaaataattcgaataaaggcaaactttaaaggtaaaa
tactccattttatgaagaaaaatcaCTCTTAGAAAAATCCCCTAGCCCCC
CTGGTAGCTACGGCACTGtctatagaggtctgcaattcagacATCTGTCT
CTCGTGTCTTTATCGAGAAGAATAAGTCAATTCATCATCTCTCATAATTT
CATTTTAGGAACTTGAGAAACCTGCTGTTGGAAGGGAACCAGTTATCTCA
TCTTCCATTTGAATTAGGTAAGTTTCTTTTCTACTGTGTCTTTACCTCAT
TTATGTCAAAAAAAGTACGTTCGCATTTGGGAAAGGGGAGTGAGATAAAA
ATGTATACacgttttgagatttttcaatacAAGGAAATTTTGGCCATACT
TTAATCATGCTTTCTGATTATTTTATCAACAAAGACAAAGTGCTAAACTT
TGTTTCAATTTCTCTAAATGCTTTAATTTCCTGTTTATAGACATTTATAC
CTATAGGGGATCTCGAAAGCTTGCGTACGCGGGAGACACCAAAGCGATTG
AGCCTTGAATATTTCATTGTGTGACTTTACCGTAAACTTGACTTGACTGA
GTTGCCTGAATTTCtccttatttttggacctacctcggaggtcctttaat
ttaacctttgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgtctgtctGTCCGTCcatc
cgttcgtccgtccgttcgtctgttcaaacttttctcgggattggcccaTT
ATGTTTTTGCttagtgatgcaaaatgataaaaatatggtttttcggactt
tttgtgaaattgttttgttcTGATTTTTCGCATAAAGAtaaagggcaagg
ttctctaaaaagtggatGAAGCTGTTTTTTCCGGAAAATATTCTTTGGCC
GTAAAAATTGgatggggaaattcccttttgtcatttttagagaCTTAAAA
TACTTGATTTTTTGCAgactgatgtaaaatggtattgtttaaaatctgat
ggagcccgattttcgaaattaaaaatttttgggccaaatttgggccaaat
tttgGATTTGTGGAAGTTGTTTCATTTATCTTTATAAAAGAGTTATCTTT
ACATGAAAGAAAGAATTGTTTTTCGTTTGTGTCCAAAACATAGCATGACt
ccttaaaaaaaattaaaaagccaGTGTGAAGCAAGCTTCATCGTGTATTT
CAAGCTTACGTATCTCTATGTTCTGctgttatcttttctttttcgttcga
aCATTTTCATCAATTCATTCAGCATGTTTCCGACTATCTatctcaggtag
gtccattcggCATGTTGCTTGTCCATTTTTAGATTTGGAAAGATTTGTTG
ATTACTTATTATGAAATATCCTTATGAAACAAAACGTTtcattatcaaat
tttttcagcTCGGCGCTTTTACTCTCTACTTTATTTTGAGGTTTGTTGAC
ATCGCTATCCGGTTTGAATTTGATCGGTAATCCATTGGTTGTTCCGCCCC
AAGAAGTGGTCGCTTGTGGTGCAAAGGTATAAAGTTTGCTGgatattttt
ttaacttctGTTTCCTTCGTGGAATCATTTCCGTGCACCACTTTATAACA
CGTGAAACTTTTGACCAGCGGACAGTACTagaggcccccagcggaccttc
aattcacacaatcacgcaaatttcaccgtgaacttttttacgcgcaaagc
attgtgggcaatatttgggggtcaaatctgagttttcacgttaagctgat
atcgtctattcacgcaatttttgttcacgcaatgcttttcaattcacgca
tttacgcaatttttttccaattttcgcgCATTCACGcgagtgaaaaagcc
cattcacgcattcaagcAAACCGCTGGGGACCCGTACTAACATACCGGAA
TTTAATACAAGGGTGGCTTTGATTTTGCTTTGTGCTCTGGTTTCGTGTAA
TAACTAGTAATAACTGGTTATACGCATTATTCGCGTATATATTATTCAAC
CAGagattttttcttaactttttcttaacttttttcgtgTTGTTTACACG
TAATCAAAACAGAGCTAATTCGAAACCTATGGCCAGGCAAGAGGATAAAT
GATGGAGTGGTCGCTAGCACCTGGGACCAGCCAGTGGTAACACTGAACTA
CAGAATTGCagaattttcaattcaattgtTTTCTCGTGTTTTTTTCTTAG
GTAATTTTGAAGTATTTAAGAGAGCAGCTGGCGATTGAacaaaagtttgg
aaaaatgGATCTTGGAGGTACgataagacattttttttacttttagatAT
GAAAAGTTATTCCCATTACCATGTCAGTTTACCACATGAACTGAAAAGAT
TCGTAAGCAAAAACAACAATATTGGCAAAAATCTGGTCACTTtgtaaaaa
tgtcatcaattttCGCCAACAATTTTTTACGAATACGTAGATATTCCATA
ATAAAATAAATCGAACATGTGTGTTGTGATGTTATAGACAAAAGAATAAG
ACCGGAAGTGCGAGTGCCTCTTTAACGTCCGAGTTGGATTCATTAAGATA
TGTGGGCGATTGCCCTACATAAGCTGACCCCAAAGGGGATTGAGAATCTT
ACGTCGTATATGTTTTGGTGTTGTTTTGCATTTATTTCTGTTCAAAAAGT
TCCTTATTTATATGATGTTGTTTCCTTGTGTGTTCTTCTAGGATATATAG
ACATAAACATTTTCATACGGACACGTTCACACTGAAGGGTTGTGCAAACA
TGAAGCACAATGTATAGCATTCTCAAGATTTCTTTGAGCTGCACTAGGTA
GCTCATTTATAAACCTGGTATGGAGCTGAGAGTAGATTTGACAATTCATC
CTTACATTCGATTTATCCTTACATTCAGCACAGAAGAGTCTTCAAAATGA
CGGATAGATTTCCTAATAGTTGTTTAAGAGAACGCGACGGCCTAtggaat
aacaaattactccacatacattactttccctcagccagtaAAAACGTGgc
aaattatcttgtctctaggtaactgctgtggattaattagttattcaaaa
gaccgtcGCGTTCTGTCAAACGACTATTCTATATATGTTTATCTGACATT
CATGTTTATTTTATGCCATATATATGACTTATATTTCTCTAGATGTTGTT
GGAGACAGCAGGCATCGTCACAAAACTTCTGAAGATTTCTCTGACGAAGA
AAGCACTATTCCTTTTGAAGCAGGTTAGACATTATCTCTCTTTTTTTGTT
TGCGTGTAAAGAACGAGTACCTTGCTCCTTTtagttgaaattcaaaaaat
ataaaactgaTCACATTTAATACTACAGTTGACTCTCAAAAATTCGGATT
ACGGAAAGTATTTAATGTGATTTTCCACTTGAGGGGATCAACGTTTcagt
ttgaattacagaaagatttgaataataatGGTTCGATTTAGAGAGGCTTG
ACAGTTTTCAGTGGCCATGCAAACGACACAGCctaaattttccttaaaat
tgaaatttatgtTGATCTAGAAAGTCCTGTTTCTAATAACTAAGATTTTA
AATCAACAAACGAAAcatctgttttcttttttttttgtaggaGCAGGGTA
CTCGGCTAACACTTTCGCTACTAACGACACAACCCATTTCTCGACTAATA
ACATTGATCTTGAAACAAAAACTAATACTGATACGCTTTTGACACAAAAG
TTAGAGGTTTCACTAACACCTAATGATTCAGAACAAACCTCTTCACTTGA
TCATGTAGGGAAGTCTGACCAAGTTCTACCTACTCAGAAGTCAATGTCTA
AAAAGTTGTCAAAGAGTAATCAAAAATGCGACAACATTAGAGCACATGTA
GTCAAAACGAGATCTGATATTAAACAGAAATCGAAATCTGACTCCAAACT
TGAAACTAAAGAGAACGCTCATCAACGAAGAGTTGCCGataagaaaaaga
ttttgactGAGAATTTGGCTAACAGACCACAAACCAGTCCAAGTGAATTG
AATCTAATACGCAGGAAAAGTAGACAGCGTAAAAGAGAGGTTAAAAAAGA
AGATAATAAAAGTCGAATCGTTAATTTGACTGCACCAACATCAACCAAGG
ATATTGGCGAATCTACAAATGCCAAGAAGAGAGTTAATCCTTTGGTAACA
CAAATGCCAAGGTTCAAAGATCTGAAAATGGACAGTATGGTTGCATTGCG
ATTGTCTGACCATCACTTCATCATCCCTGGTCAACCATCCCTAGGGAAAA
TTATACTCATCTCTGACAGTCATGTTACAGTGCACATGTTCACTGGTTCT
TTTGGTGGCGCCTGGTGGCCGATGATGAGTCGCCAGAGCCCTTACACCCG
AGAAGTTTCTTTAGATAACGTAGTTCATCAGTTTGAACTGGACCAACAGA
ATATGTTATTTGCTAAAGATGTAGATCTTTTAAAAGCCCTTTGTAAAAGA
TAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045448XLOC_045448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073258-exon-scaffold_89-1491911889:336858..336993TCONS_00073258-exon-scaffold_89-1491911889:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:336858..336993TCONS_00073258-exon-scaffold_89-1510915933:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:336858..336993TCONS_00073258-exon-scaffold_89-1575043694:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:337716..337774TCONS_00073258-exon-scaffold_89-1491911889:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:337716..337774TCONS_00073258-exon-scaffold_89-1510915933:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:337716..337774TCONS_00073258-exon-scaffold_89-1575043694:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:338998..339083TCONS_00073258-exon-scaffold_89-1491911889:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:338998..339083TCONS_00073258-exon-scaffold_89-1510915933:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:338998..339083TCONS_00073258-exon-scaffold_89-1575043694:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:339758..339824TCONS_00073258-exon-scaffold_89-1491911889:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:339758..339824TCONS_00073258-exon-scaffold_89-1510915933:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:339758..339824TCONS_00073258-exon-scaffold_89-1575043694:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:340700..340780TCONS_00073258-exon-scaffold_89-1491911889:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:340700..340780TCONS_00073258-exon-scaffold_89-1510915933:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:340700..340780TCONS_00073258-exon-scaffold_89-1575043694:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:341148..342013TCONS_00073258-exon-scaffold_89-1491911889:341148..342013Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:341148..342013TCONS_00073258-exon-scaffold_89-1510915933:341148..342013Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:341148..342013TCONS_00073258-exon-scaffold_89-1575043694:341148..342013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:336858..342013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44753	5.61112	4.6057	4.5876	11.5053	7.97722	9.81931	9.53876	7.80703	7.19309	9.70875	8.23927	1.02306	1.48898	1.20676	0.543991	2.32523	2.13857	0.52514	1.13141	0.996098	1.14821	3.26904	3.08102	9.63954	9.05024	3.52407	3.38449	1.68654	1.39131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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