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TCONS_00073258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073258
Unique NameTCONS_00073258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073258 ID=TCONS_00073258|Name=TCONS_00073258|organism=Clytia hemisphaerica|type=transcript|length=1295bp
ctcagtTTCTTTATTTGGAGAAGAACTATTTGGATGGATTGAGTGAAGAT
TTCTTCCCTGCTCTACCATTGTTGAAATGGCTTGATGTCCGCCACAATCA
TCTCCGAAGTCTGCCAAACAACATCCACATTGCAAAGAACTTGAGAAACC
TGCTGTTGGAAGGGAACCAGTTATCTCATCTTCCATTTGAATTAGGTTTG
TTGACATCGCTATCCGGTTTGAATTTGATCGGTAATCCATTGGTTGTTCC
GCCCCAAGAAGTGGTCGCTTGTGGTGCAAAGGTAATTTTGAAGTATTTAA
GAGAGCAGCTGGCGATTGAacaaaagtttggaaaaatgGATCTTGGAGAT
GTTGTTGGAGACAGCAGGCATCGTCACAAAACTTCTGAAGATTTCTCTGA
CGAAGAAAGCACTATTCCTTTTGAAGCAGgaGCAGGGTACTCGGCTAACA
CTTTCGCTACTAACGACACAACCCATTTCTCGACTAATAACATTGATCTT
GAAACAAAAACTAATACTGATACGCTTTTGACACAAAAGTTAGAGGTTTC
ACTAACACCTAATGATTCAGAACAAACCTCTTCACTTGATCATGTAGGGA
AGTCTGACCAAGTTCTACCTACTCAGAAGTCAATGTCTAAAAAGTTGTCA
AAGAGTAATCAAAAATGCGACAACATTAGAGCACATGTAGTCAAAACGAG
ATCTGATATTAAACAGAAATCGAAATCTGACTCCAAACTTGAAACTAAAG
AGAACGCTCATCAACGAAGAGTTGCCGataagaaaaagattttgactGAG
AATTTGGCTAACAGACCACAAACCAGTCCAAGTGAATTGAATCTAATACG
CAGGAAAAGTAGACAGCGTAAAAGAGAGGTTAAAAAAGAAGATAATAAAA
GTCGAATCGTTAATTTGACTGCACCAACATCAACCAAGGATATTGGCGAA
TCTACAAATGCCAAGAAGAGAGTTAATCCTTTGGTAACACAAATGCCAAG
GTTCAAAGATCTGAAAATGGACAGTATGGTTGCATTGCGATTGTCTGACC
ATCACTTCATCATCCCTGGTCAACCATCCCTAGGGAAAATTATACTCATC
TCTGACAGTCATGTTACAGTGCACATGTTCACTGGTTCTTTTGGTGGCGC
CTGGTGGCCGATGATGAGTCGCCAGAGCCCTTACACCCGAGAAGTTTCTT
TAGATAACGTAGTTCATCAGTTTGAACTGGACCAACAGAATATGTTATTT
GCTAAAGATGTAGATCTTTTAAAAGCCCTTTGTAAAAGATAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_89:336858..342013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073258 ID=TCONS_00073258|Name=TCONS_00073258|organism=Clytia hemisphaerica|type=transcript|length=5156bp|location=Sequence derived from alignment at scaffold_89:336858..342013+ (Clytia hemisphaerica)
ctcagtTTCTTTATTTGGAGAAGAACTATTTGGATGGATTGAGTGAAGAT TTCTTCCCTGCTCTACCATTGTTGAAATGGCTTGATGTCCGCCACAATCA TCTCCGAAGTCTGCCAAACAACATCCACATTGCAAAGTAAATATATGACT TTTGTTTTGTCCTGACTATCTAAGGTTAAAGTAATTAGAACTGACTGGGA GAGGCTTAAAAGTTTTGATATAGATTgaattatatttatattttatccTC CTGAGTCGTTTGTGTATAAGTACTAAGCACCACCAGAGAGCACGAGTTGG GTAGAGGCAAGTGCAGTGATTTTCATATCTAAGATATTGAATGCTGTCGA CTGGATTGGGTTTGTTCCGTTTTTTGGAAGGATTATCTTTCTCGTAGGCT TCTGCTcctcctctagcgaaaaaagtttctatataggaagtatatctcaG TGCCGCAGGAAGCATTTTGATATGACACCGTGAGGGCCAACCACCGCACG GTTTGGGCcgtgggggggggggaattttgaaatctacagctctaaattgg ctaaaaccaaaataattcgaataacaactaaaataattcgaataaaaact aaaataattcgaataaaaactaaaataattcgaataaaaactaaaataat tcgaataaaaactaaaataattcgaataaaggcaaactttaaaggtaaaa tactccattttatgaagaaaaatcaCTCTTAGAAAAATCCCCTAGCCCCC CTGGTAGCTACGGCACTGtctatagaggtctgcaattcagacATCTGTCT CTCGTGTCTTTATCGAGAAGAATAAGTCAATTCATCATCTCTCATAATTT CATTTTAGGAACTTGAGAAACCTGCTGTTGGAAGGGAACCAGTTATCTCA TCTTCCATTTGAATTAGGTAAGTTTCTTTTCTACTGTGTCTTTACCTCAT TTATGTCAAAAAAAGTACGTTCGCATTTGGGAAAGGGGAGTGAGATAAAA ATGTATACacgttttgagatttttcaatacAAGGAAATTTTGGCCATACT TTAATCATGCTTTCTGATTATTTTATCAACAAAGACAAAGTGCTAAACTT TGTTTCAATTTCTCTAAATGCTTTAATTTCCTGTTTATAGACATTTATAC CTATAGGGGATCTCGAAAGCTTGCGTACGCGGGAGACACCAAAGCGATTG AGCCTTGAATATTTCATTGTGTGACTTTACCGTAAACTTGACTTGACTGA GTTGCCTGAATTTCtccttatttttggacctacctcggaggtcctttaat ttaacctttgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg ttcgttcgttcgttcgttcgttcgttcgttcgtctgtctGTCCGTCcatc cgttcgtccgtccgttcgtctgttcaaacttttctcgggattggcccaTT ATGTTTTTGCttagtgatgcaaaatgataaaaatatggtttttcggactt tttgtgaaattgttttgttcTGATTTTTCGCATAAAGAtaaagggcaagg ttctctaaaaagtggatGAAGCTGTTTTTTCCGGAAAATATTCTTTGGCC GTAAAAATTGgatggggaaattcccttttgtcatttttagagaCTTAAAA TACTTGATTTTTTGCAgactgatgtaaaatggtattgtttaaaatctgat ggagcccgattttcgaaattaaaaatttttgggccaaatttgggccaaat tttgGATTTGTGGAAGTTGTTTCATTTATCTTTATAAAAGAGTTATCTTT ACATGAAAGAAAGAATTGTTTTTCGTTTGTGTCCAAAACATAGCATGACt ccttaaaaaaaattaaaaagccaGTGTGAAGCAAGCTTCATCGTGTATTT CAAGCTTACGTATCTCTATGTTCTGctgttatcttttctttttcgttcga aCATTTTCATCAATTCATTCAGCATGTTTCCGACTATCTatctcaggtag gtccattcggCATGTTGCTTGTCCATTTTTAGATTTGGAAAGATTTGTTG ATTACTTATTATGAAATATCCTTATGAAACAAAACGTTtcattatcaaat tttttcagcTCGGCGCTTTTACTCTCTACTTTATTTTGAGGTTTGTTGAC ATCGCTATCCGGTTTGAATTTGATCGGTAATCCATTGGTTGTTCCGCCCC AAGAAGTGGTCGCTTGTGGTGCAAAGGTATAAAGTTTGCTGgatattttt ttaacttctGTTTCCTTCGTGGAATCATTTCCGTGCACCACTTTATAACA CGTGAAACTTTTGACCAGCGGACAGTACTagaggcccccagcggaccttc aattcacacaatcacgcaaatttcaccgtgaacttttttacgcgcaaagc attgtgggcaatatttgggggtcaaatctgagttttcacgttaagctgat atcgtctattcacgcaatttttgttcacgcaatgcttttcaattcacgca tttacgcaatttttttccaattttcgcgCATTCACGcgagtgaaaaagcc cattcacgcattcaagcAAACCGCTGGGGACCCGTACTAACATACCGGAA TTTAATACAAGGGTGGCTTTGATTTTGCTTTGTGCTCTGGTTTCGTGTAA TAACTAGTAATAACTGGTTATACGCATTATTCGCGTATATATTATTCAAC CAGagattttttcttaactttttcttaacttttttcgtgTTGTTTACACG TAATCAAAACAGAGCTAATTCGAAACCTATGGCCAGGCAAGAGGATAAAT GATGGAGTGGTCGCTAGCACCTGGGACCAGCCAGTGGTAACACTGAACTA CAGAATTGCagaattttcaattcaattgtTTTCTCGTGTTTTTTTCTTAG GTAATTTTGAAGTATTTAAGAGAGCAGCTGGCGATTGAacaaaagtttgg aaaaatgGATCTTGGAGGTACgataagacattttttttacttttagatAT GAAAAGTTATTCCCATTACCATGTCAGTTTACCACATGAACTGAAAAGAT TCGTAAGCAAAAACAACAATATTGGCAAAAATCTGGTCACTTtgtaaaaa tgtcatcaattttCGCCAACAATTTTTTACGAATACGTAGATATTCCATA ATAAAATAAATCGAACATGTGTGTTGTGATGTTATAGACAAAAGAATAAG ACCGGAAGTGCGAGTGCCTCTTTAACGTCCGAGTTGGATTCATTAAGATA TGTGGGCGATTGCCCTACATAAGCTGACCCCAAAGGGGATTGAGAATCTT ACGTCGTATATGTTTTGGTGTTGTTTTGCATTTATTTCTGTTCAAAAAGT TCCTTATTTATATGATGTTGTTTCCTTGTGTGTTCTTCTAGGATATATAG ACATAAACATTTTCATACGGACACGTTCACACTGAAGGGTTGTGCAAACA TGAAGCACAATGTATAGCATTCTCAAGATTTCTTTGAGCTGCACTAGGTA GCTCATTTATAAACCTGGTATGGAGCTGAGAGTAGATTTGACAATTCATC CTTACATTCGATTTATCCTTACATTCAGCACAGAAGAGTCTTCAAAATGA CGGATAGATTTCCTAATAGTTGTTTAAGAGAACGCGACGGCCTAtggaat aacaaattactccacatacattactttccctcagccagtaAAAACGTGgc aaattatcttgtctctaggtaactgctgtggattaattagttattcaaaa gaccgtcGCGTTCTGTCAAACGACTATTCTATATATGTTTATCTGACATT CATGTTTATTTTATGCCATATATATGACTTATATTTCTCTAGATGTTGTT GGAGACAGCAGGCATCGTCACAAAACTTCTGAAGATTTCTCTGACGAAGA AAGCACTATTCCTTTTGAAGCAGGTTAGACATTATCTCTCTTTTTTTGTT TGCGTGTAAAGAACGAGTACCTTGCTCCTTTtagttgaaattcaaaaaat ataaaactgaTCACATTTAATACTACAGTTGACTCTCAAAAATTCGGATT ACGGAAAGTATTTAATGTGATTTTCCACTTGAGGGGATCAACGTTTcagt ttgaattacagaaagatttgaataataatGGTTCGATTTAGAGAGGCTTG ACAGTTTTCAGTGGCCATGCAAACGACACAGCctaaattttccttaaaat tgaaatttatgtTGATCTAGAAAGTCCTGTTTCTAATAACTAAGATTTTA AATCAACAAACGAAAcatctgttttcttttttttttgtaggaGCAGGGTA CTCGGCTAACACTTTCGCTACTAACGACACAACCCATTTCTCGACTAATA ACATTGATCTTGAAACAAAAACTAATACTGATACGCTTTTGACACAAAAG TTAGAGGTTTCACTAACACCTAATGATTCAGAACAAACCTCTTCACTTGA TCATGTAGGGAAGTCTGACCAAGTTCTACCTACTCAGAAGTCAATGTCTA AAAAGTTGTCAAAGAGTAATCAAAAATGCGACAACATTAGAGCACATGTA GTCAAAACGAGATCTGATATTAAACAGAAATCGAAATCTGACTCCAAACT TGAAACTAAAGAGAACGCTCATCAACGAAGAGTTGCCGataagaaaaaga ttttgactGAGAATTTGGCTAACAGACCACAAACCAGTCCAAGTGAATTG AATCTAATACGCAGGAAAAGTAGACAGCGTAAAAGAGAGGTTAAAAAAGA AGATAATAAAAGTCGAATCGTTAATTTGACTGCACCAACATCAACCAAGG ATATTGGCGAATCTACAAATGCCAAGAAGAGAGTTAATCCTTTGGTAACA CAAATGCCAAGGTTCAAAGATCTGAAAATGGACAGTATGGTTGCATTGCG ATTGTCTGACCATCACTTCATCATCCCTGGTCAACCATCCCTAGGGAAAA TTATACTCATCTCTGACAGTCATGTTACAGTGCACATGTTCACTGGTTCT TTTGGTGGCGCCTGGTGGCCGATGATGAGTCGCCAGAGCCCTTACACCCG AGAAGTTTCTTTAGATAACGTAGTTCATCAGTTTGAACTGGACCAACAGA ATATGTTATTTGCTAAAGATGTAGATCTTTTAAAAGCCCTTTGTAAAAGA TAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045448XLOC_045448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073258-exon-scaffold_89-1491911889:336858..336993TCONS_00073258-exon-scaffold_89-1491911889:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:336858..336993TCONS_00073258-exon-scaffold_89-1510915933:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:336858..336993TCONS_00073258-exon-scaffold_89-1575043694:336858..336993Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:337716..337774TCONS_00073258-exon-scaffold_89-1491911889:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:337716..337774TCONS_00073258-exon-scaffold_89-1510915933:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:337716..337774TCONS_00073258-exon-scaffold_89-1575043694:337716..337774Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:338998..339083TCONS_00073258-exon-scaffold_89-1491911889:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:338998..339083TCONS_00073258-exon-scaffold_89-1510915933:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:338998..339083TCONS_00073258-exon-scaffold_89-1575043694:338998..339083Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:339758..339824TCONS_00073258-exon-scaffold_89-1491911889:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:339758..339824TCONS_00073258-exon-scaffold_89-1510915933:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:339758..339824TCONS_00073258-exon-scaffold_89-1575043694:339758..339824Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:340700..340780TCONS_00073258-exon-scaffold_89-1491911889:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:340700..340780TCONS_00073258-exon-scaffold_89-1510915933:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:340700..340780TCONS_00073258-exon-scaffold_89-1575043694:340700..340780Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1491911889:341148..342013TCONS_00073258-exon-scaffold_89-1491911889:341148..342013Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1510915933:341148..342013TCONS_00073258-exon-scaffold_89-1510915933:341148..342013Clytia hemisphaericaexon
TCONS_00073258-exon-scaffold_89-1575043694:341148..342013TCONS_00073258-exon-scaffold_89-1575043694:341148..342013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:336858..342013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44753 5.61112 4.6057 4.5876 11.5053 7.97722 9.81931 9.53876 7.80703 7.19309 9.70875 8.23927 1.02306 1.48898 1.20676 0.543991 2.32523 2.13857 0.52514 1.13141 0.996098 1.14821 3.26904 3.08102 9.63954 9.05024 3.52407 3.38449 1.68654 1.39131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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