TCONS_00073248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073248
Unique NameTCONS_00073248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073248 ID=TCONS_00073248|Name=TCONS_00073248|organism=Clytia hemisphaerica|type=transcript|length=526bp
CAGGATATCATTGGAATGGTAGATCAAATGACGGTGAAATACGATGGTTG
ATCAATTGACGgtgaaatctgattggttgatcaAGTGACGgtgaaatctg
attggttgatcaAGTGACGgtgaaatctgattggttgatcaAGTGACGgt
gaaatctgattggttgatcgAGTGACAGTGAAACCTGATTGGTTGATCAA
GTGACGgtgaaatctgattggttgatcaAGTGATGGTGAGATCTGATTGG
TTGATCAAGTGACGGTGAAACCTGATTGGTTGATCGAGTGACGgtgaaat
ctgattggttgatcaAGTGACGGTGAAATCTCATTGGTTTGAAATGATTA
TCTGACCACAAACAGTATGCATCGCCACCAATTGTACAAAACCCGCTCCG
CATCCTGTACATGGCAATCAATGACAAACAATGATAGAAAGCCTGATGTA
ACCCACTTTCAAATATTAACGAGATAACATTATCAATATGTTGGTAAGTC
TGcaatttttatgtattttactCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_89:56808..57656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073248 ID=TCONS_00073248|Name=TCONS_00073248|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at scaffold_89:56808..57656+ (Clytia hemisphaerica)
CAGGATATCATTGGAATGGTAGATCAAATGACGGTGAAATACGATGGTTG ATCAATTGACGgtgaaatctgattggttgatcaAGTGACGgtgaaatctg attggttgatcaAGTGACGgtgaaatctgattggttgatcaAGTGACGgt gaaatctgattggttgatcgAGTGACAGTGAAACCTGATTGGTTGATCAA GTGACGgtgaaatctgattggttgatcaAGTGATGGTGAGATCTGATTGG TTGATCAAGTGACGGTGAAACCTGATTGGTTGATCGAGTGACGgtgaaat ctgattggttgatcaAGTGACGGTGAAATCTCATTGGTTTGAAATGATTA TCTGACCACAAACAGTATGCATCGCCACCAATTGTACAAAACCCGCTCCG CATCCTGTACATGGCAATCAATGTAATCGATATTTAATTTACCTGGTATT GTAGACCAACCTTTAGCCATAATTTTGTGTGAACTATcgtcccctggata tccgatatcctcgaagggggcacggactatttctggaaaagcccatatTT ATACATTACCCTCAATGTGCGAATGAAGGCTATATGAAACCCATTTGTCG TCACGTAATATTTACTGATATGTTAACTCGCTAGCGACTTTCCTACAATA CAGTTGACTTAGAATAGTGTCTTTCGTTTCTAACGCCCTCTTGTTTCTTG AATTGTCGTTATGATACCTATAattctttattattttgttcTAAGGACAA ACAATGATAGAAAGCCTGATGTAACCCACTTTCAAATATTAACGAGATAA CATTATCAATATGTTGGTAAGTCTGcaatttttatgtattttactCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045442XLOC_045442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073248-exon-scaffold_89-1491911889:56808..57229TCONS_00073248-exon-scaffold_89-1491911889:56808..57229Clytia hemisphaericaexon
TCONS_00073248-exon-scaffold_89-1510915933:56808..57229TCONS_00073248-exon-scaffold_89-1510915933:56808..57229Clytia hemisphaericaexon
TCONS_00073248-exon-scaffold_89-1575043694:56808..57229TCONS_00073248-exon-scaffold_89-1575043694:56808..57229Clytia hemisphaericaexon
TCONS_00073248-exon-scaffold_89-1491911889:57553..57656TCONS_00073248-exon-scaffold_89-1491911889:57553..57656Clytia hemisphaericaexon
TCONS_00073248-exon-scaffold_89-1510915933:57553..57656TCONS_00073248-exon-scaffold_89-1510915933:57553..57656Clytia hemisphaericaexon
TCONS_00073248-exon-scaffold_89-1575043694:57553..57656TCONS_00073248-exon-scaffold_89-1575043694:57553..57656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:56808..57656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.559586 0.218274 0.126718 0.123974 0.905559 0.477057 1.29498 1.48176 0.848794 0.817731 1.02048 0.968971 0.223298 0.618392 0.190651 0.409195 0.252047 0.775021 0.11897 0.248988 0.649247 0.15834 0.64161 0.466653 0.480642 1.0724 0 0.163777 0.124219 0.37968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top