TCONS_00073241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073241
Unique NameTCONS_00073241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073241 ID=TCONS_00073241|Name=TCONS_00073241|organism=Clytia hemisphaerica|type=transcript|length=456bp
ATATTCTTCATTTGTATTGATAGCTTTCATATATATTCTGAACCTTGCTG
ATACAAATATATAATTTCCAATACTTTTCTTTGATTAGTTACAGACCGTC
TTATGTATAAATCAATATCAATTGACAGAAAATGCCTAATAATGTTCAGG
TTTAAAGTTGAAACTAATTTGAATTCTGTCGACGGCAGTTGCATGAAAGA
CAATTTTTGTTAGAATATTCAAATTTCtagattttatttataatattttg
ttactgaaaagatttttatttttaattcttgaaatatgaaaactttcaaa
taacCGCAGTGAATTGGAATATCTTATGGTATTTTCACATTTAGGTATCA
GTGTcacccacagatatctgtaaagcccgaagggctagatttgcggcttt
tatcaaaaagtgaagctcatctttggaaggatttcctaccagagtcacgt
gactaa
Run BLAST on NCBI

transcript from alignment at scaffold_88:365968..366423

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073241 ID=TCONS_00073241|Name=TCONS_00073241|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_88:365968..366423 (Clytia hemisphaerica)
ttagtcacgtgactctggtaggaaatccttccaaagatgagcttcacttt
ttgataaaagccgcaaatctagcccttcgggctttacagatatctgtggg
tgACACTGATACCTAAATGTGAAAATACCATAAGATATTCCAATTCACTG
CGgttatttgaaagttttcatatttcaagaattaaaaataaaaatctttt
cagtaacaaaatattataaataaaatctaGAAATTTGAATATTCTAACAA
AAATTGTCTTTCATGCAACTGCCGTCGACAGAATTCAAATTAGTTTCAAC
TTTAAACCTGAACATTATTAGGCATTTTCTGTCAATTGATATTGATTTAT
ACATAAGACGGTCTGTAACTAATCAAAGAAAAGTATTGGAAATTATATAT
TTGTATCAGCAAGGTTCAGAATATATATGAAAGCTATCAATACAAATGAA
GAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045436XLOC_045436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073241-exon-scaffold_88-1491911889:365968..366423TCONS_00073241-exon-scaffold_88-1491911889:365968..366423Clytia hemisphaericaexon
TCONS_00073241-exon-scaffold_88-1510915933:365968..366423TCONS_00073241-exon-scaffold_88-1510915933:365968..366423Clytia hemisphaericaexon
TCONS_00073241-exon-scaffold_88-1575043694:365968..366423TCONS_00073241-exon-scaffold_88-1575043694:365968..366423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:365968..366423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.73524	1.06456	0.766614	1.07267	0.456455	0.348569	0.460848	1.01257	1.29637	0.528816	0.328299	0.505001	0.327411	0.220172	0.192421	0.15089	0.754599	0.695692	0.184253	0.18214	0.810789	1.29799	3.05361	2.464	0.578573	0	1.64457	3.06441	1.54539	1.9532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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